BAC Information

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BAC

Clone NameB6Ng01-176F05
Chromosome2 (Build37)
Map Location 172,161,155 - 172,304,458
singlet/doubletdoublet
Overlap gene2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik
Upstream geneLOC100043744, Cbln4, Mc3r
Downstream geneLOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176F05.bB6Ng01-176F05.g
ACCGA003887GA003888
length535151
definitionB6Ng01-176F05.b B6Ng01-176F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,161,155 - 172,161,694)(172,304,308 - 172,304,458)
sequence
caggtgtgcttgatgtcctacctgctactccagcctcaaggagcagaggc
aggagatctccagagcagtctggctagccagagtaaccacatcagtgagc
tctgggttccattgagagcccctgtctcactgaattaggtgaaagggtaa
agagagatgactcttgggcttttagaccctcatcctagctgcctggaagt
cagtattctgctagcagccctcagatgaagatggagaactctcagctcct
catgtaccatgcctgcctggacgctgccatgttcctacttggtgataatg
gactgaacctctgaacctgtaagccagccccaattcaatgttgtctttat
aagacttgccttggtcatggttgtctattcacagctgtaaaaccctaaga
caatgcccatgcatggaaaggttgcttcccagaagtcacagagatgtgtg
tttccttattcccacattgcaacaagagagctggggttcaagagtttttt
tttaatattattgatttagttattggggggtgtcc
atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtactgagcccaga
gtctgaggactgccaggcaagttctatacactcagcttcttgcaggtttt
ctctctctctttctctctctctctcttggtttttttttttgggggggggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172161155_172161694
seq2: B6Ng01-176F05.b_43_582

seq1  GAATTCCAGGTGTGCTTGATGTCCTACCTGCTACTCCAGCCTCAAGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGTGCTTGATGTCCTACCTGCTACTCCAGCCTCAAGGAGC  50

seq1  AGAGGCAGGAGATCTCCAGAGCAGTCTGGCTAGCCAGAGTAACCACATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGAGATCTCCAGAGCAGTCTGGCTAGCCAGAGTAACCACATCA  100

seq1  GTGAGCTCTGGGTTCCATTGAGAGCCCCTGTCTCACTGAATTAGGTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCTGGGTTCCATTGAGAGCCCCTGTCTCACTGAATTAGGTGAAA  150

seq1  GGGTAAAGAGAGATGACTCTTGGGCTTTTAGACCCTCATCCTAGCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAGAGAGATGACTCTTGGGCTTTTAGACCCTCATCCTAGCTGCCT  200

seq1  GGAAGTCAGTATTCTGCTAGCAGCCCTCAGATGAAGATGGAGAACTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCAGTATTCTGCTAGCAGCCCTCAGATGAAGATGGAGAACTCTCA  250

seq1  GCTCCTCATGTACCATGCCTGCCTGGACGCTGCCATGTTCCTACTTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCATGTACCATGCCTGCCTGGACGCTGCCATGTTCCTACTTGGTG  300

seq1  ATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTCAATGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTCAATGTTGT  350

seq1  CTTTATAAGACTTGCCTTGGTCATGGTTGTCTATTCACAGCTGTAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAGACTTGCCTTGGTCATGGTTGTCTATTCACAGCTGTAAAACC  400

seq1  CTAAGACAATGCCCATGCATGGAAAGGTTGCTTCCCAGAAGTCACAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACAATGCCCATGCATGGAAAGGTTGCTTCCCAGAAGTCACAGAGA  450

seq1  TGTGTGTTTCCTTATTCCCACATTGCAACAAGAGAGCTGGGGTTCAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTCCTTATTCCCACATTGCAACAAGAGAGCTGGGGTTCAAGAG  500

seq1  TTTTTTTTTAATATTATTGATTTAGTTATTGGGGGGTGTC  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAATATTATTGATTTAGTTATTGGGGGGTGTC  540

seq1: chr2_172304308_172304458
seq2: B6Ng01-176F05.g_70_220 (reverse)

seq1  CCCCCCCCCCCAAAAAAAAAAACCAAGAGAGAGAGAGAGAAAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCAAAAAAAAAAACCAAGAGAGAGAGAGAGAAAGAGAGAGA  50

seq1  GAAAACCTGCAAGAAGCTGAGTGTATAGAACTTGCCTGGCAGTCCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTGCAAGAAGCTGAGTGTATAGAACTTGCCTGGCAGTCCTCAGA  100

seq1  CTCTGGGCTCAGTACACATACACACACACACACACACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGCTCAGTACACATACACACACACACACACACACACACACACACA  150

seq1  T  151
      |
seq2  T  151