BAC Information

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BAC

Clone NameB6Ng01-177C14
Chromosome2 (Build37)
Map Location 99,915,938 - 100,040,677
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC621386, LOC668702
Downstream geneLOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177C14.bB6Ng01-177C14.g
ACCGA004510GA004511
length8801,064
definitionB6Ng01-177C14.b B6Ng01-177C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,915,938 - 99,916,817)(100,039,608 - 100,040,677)
sequence
gaattctttatactgacagagcttccagtgaggttgctagacttgttatg
cctaatattctttttatatttataattgctagctatatttataatctata
atcacttattctccataattattgtacctattatctcatttaaaagtggc
tacactatagttggtgacaatacttttctcttagagggttatcaagtcaa
tagaaaagtttaacttctgttaaaatcacaggcaaggcacactccttaga
atttctatagccaaaatggcacatacccttttcaattacaccatgacaaa
tgatgtctctagtttcattaaaagcttttatgtctttatagatcaaaaat
gacaatgctgtaattatgccaaaataatgagaaatgagttattattcata
ctttccaaacatatggactacacttgtacgacagtggagagttatatcct
catggccaaataatattggtttcagtaggggagagcacttgaataaagag
aattaaatcactgttgactaaccattgtggtctcagtacaacatatatat
atatatatgtatgtatatatatgtatttacatatatacatatatatgtag
aattcaaaatgtataatatataggtgtggagaaatagcaaatagaaataa
gagtacttgctgtataagcataaaaatctagcacccttatgaagagccat
tcaaagccaagcatattttgcaccctaaacaatgaggtgaaaagtaacaa
taaaataagttttattgcttaaatattattgctttaatttttaattgtat
aattaatcatgtatatatctgagtgtgtagtttgtgtgtgtgcctgcatt
catgtgtgtgtgtgtgtgtgtgtgtgtttg

gaattccacataaaactgaatgcactgaaactaacagaaaagaaagtggg
gaagatccttgaacacatgggcacaaagaaaacactacctaagacaatga
ttttgaaagtgagctttgcaaggcattttattacaaaaatatgtaatcct
tttcaaggaatgaataagatatgacaaacttatatttaacatttcttatt
catttataatttgcatatgtaaattacctacttaaaaaactcatttgaat
ttttaataaaaaattgagtgcctggtcagaatacatctctaataggaaaa
aaaaaaaactaagtgaattgactgattattatcataaaatcccaatagag
tgataattttttccctgtttaagtgtgggtaaataccttattgtacttta
ttcttgtggtctctaagtaaagggcattttccctagtctcttgaggctat
cttgcatgagtaagtttattcacagactagatgcttgtctgctagtaact
aaaatctgtgtgtaaaaaggatgaacaatatttccatttgccagtaggaa
acaagcctaatgatgctcacagctgtgttactcatagggtcattcttacc
atgatttggcttttactggacctttttttccagctttctacagtgaagat
gaagctctgtagtctcttatacttcatctcatgctgacttgactcattaa
ctgattccagctgttcttccatggcaacagacaatttcacatctgcagag
ccatttggatcgcacatgtgtatagcaaagagctgcttgactgttttgca
atttcaggttgtagtcagaattagagccaattaaaatgaaacattttgat
tactttatattctgacacatatttaatccgcaacaactttatgctagatg
atccacttaacctctaccgtttgatagcatattaaaataagtggaagact
tccacacagagaaggtacaaaaaaagggctaacatcaaaataagttgaga
aagttcatgtttactttgaatgaaattaagatgatgaattacataatgag
ccagatgacctagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_99915938_99916817
seq2: B6Ng01-177C14.b_48_927

seq1  GAATTCTTTATACTGACAGAGCTTCCAGTGAGGTTGCTAGACTTGTTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATACTGACAGAGCTTCCAGTGAGGTTGCTAGACTTGTTATG  50

seq1  CCTAATATTCTTTTTATATTTATAATTGCTAGCTATATTTATAATCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATTCTTTTTATATTTATAATTGCTAGCTATATTTATAATCTATA  100

seq1  ATCACTTATTCTCCATAATTATTGTACCTATTATCTCATTTAAAAGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTATTCTCCATAATTATTGTACCTATTATCTCATTTAAAAGTGGC  150

seq1  TACACTATAGTTGGTGACAATACTTTTCTCTTAGAGGGTTATCAAGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTATAGTTGGTGACAATACTTTTCTCTTAGAGGGTTATCAAGTCAA  200

seq1  TAGAAAAGTTTAACTTCTGTTAAAATCACAGGCAAGGCACACTCCTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGTTTAACTTCTGTTAAAATCACAGGCAAGGCACACTCCTTAGA  250

seq1  ATTTCTATAGCCAAAATGGCACATACCCTTTTCAATTACACCATGACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATAGCCAAAATGGCACATACCCTTTTCAATTACACCATGACAAA  300

seq1  TGATGTCTCTAGTTTCATTAAAAGCTTTTATGTCTTTATAGATCAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTCTAGTTTCATTAAAAGCTTTTATGTCTTTATAGATCAAAAAT  350

seq1  GACAATGCTGTAATTATGCCAAAATAATGAGAAATGAGTTATTATTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGCTGTAATTATGCCAAAATAATGAGAAATGAGTTATTATTCATA  400

seq1  CTTTCCAAACATATGGACTACACTTGTACGACAGTGGAGAGTTATATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAACATATGGACTACACTTGTACGACAGTGGAGAGTTATATCCT  450

seq1  CATGGCCAAATAATATTGGTTTCAGTAGGGGAGAGCACTTGAATAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCAAATAATATTGGTTTCAGTAGGGGAGAGCACTTGAATAAAGAG  500

seq1  AATTAAATCACTGTTGACTAACCATTGTGGTCTCAGTACAACATATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATCACTGTTGACTAACCATTGTGGTCTCAGTACAACATATATAT  550

seq1  ATATATATGTATGTATATATATGTATTTACATATATACATATATATGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGTATGTATATATATGTATTTACATATATACATATATATGTAG  600

seq1  AATTCAAAATGTATAATATATAGGTGTGGAGAAATAGCAAATAGAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAATGTATAATATATAGGTGTGGAGAAATAGCAAATAGAAATAA  650

seq1  GAGTACTTGCTGTATAAGCATAAAAATCTAGCACCCTTATGAAGAGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTGCTGTATAAGCATAAAAATCTAGCACCCTTATGAAGAGCCAT  700

seq1  TCAAAGCCAAGCATATTTTGCACCCTAAACAATGAGGTGAAAAGTAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCAAGCATATTTTGCACCCTAAACAATGAGGTGAAAAGTAACAA  750

seq1  TAAAATAAGTTTTATTGCTTAAATATTATTGCTTTAATTTTTAATTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAGTTTTATTGCTTAAATATTATTGCTTTAATTTTTAATTGTAT  800

seq1  AATTAATCATGTATATATCTGAGTGTGTAGTTTGTGTGTGTGCCTGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCATGTATATATCTGAGTGTGTAGTTTGTGTGTGTGCCTGCATT  850

seq1  CATGTGTGTGTGTGTGTGTGTGTGTGTTTG  880
      ||||||||||||||||||||||||||||||
seq2  CATGTGTGTGTGTGTGTGTGTGTGTGTTTG  880


seq1: chr2_100039608_100040677
seq2: B6Ng01-177C14.g_62_1125 (reverse)

seq1  GCTAGTGTCATCTTGCTCATTAATGTAAATCCATCATTCTTATTTTTCAT  50
      ||||| ||||||| ||||||| |||| ||| ||||| |||||  ||||||
seq2  GCTAG-GTCATCTGGCTCATT-ATGT-AATTCATCA-TCTTA-ATTTCAT  45

seq1  TCAAAGTTAACATG-ACTTTCTCCACTTATTTTTGGATGTTAGCCCTTTT  99
      ||||||| |||||| |||||||| |||||||||  |||||||||||||||
seq2  TCAAAGTAAACATGAACTTTCTCAACTTATTTT--GATGTTAGCCCTTTT  93

seq1  TTTTGTTTACTTTCTCTGTGT-GAAGTCTT-CACTTATTTTAATATGCTT  147
      ||   | ||| |||||||||| |||||||| ||||||||||||||||| |
seq2  TT---TGTACCTTCTCTGTGTGGAAGTCTTCCACTTATTTTAATATGC-T  139

seq1  ATCAAACGGTAGA-GTTTAGT-GATCATCTAGCATAAAGTTGTTGC-GAT  194
      ||||||||||||| ||| ||| |||||||||||||||||||||||| |||
seq2  ATCAAACGGTAGAGGTTAAGTGGATCATCTAGCATAAAGTTGTTGCGGAT  189

seq1  TAAATATGTTGTCAGAATATAAGTTAATCAAAATGTTTCATTTTAATTGG  244
      |||||||| |||||||||||||  ||||||||||||||||||||||||||
seq2  TAAATATG-TGTCAGAATATAAAGTAATCAAAATGTTTCATTTTAATTGG  238

seq1  CTCTAATTCTGACTACAACCTGAAATTGCAAAACAGTCAAGCAGCTCTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTCTGACTACAACCTGAAATTGCAAAACAGTCAAGCAGCTCTTT  288

seq1  GCTATACACATGTGCGATCCAAATGGCTCTGCAGATGTGAAATTGTCTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACACATGTGCGATCCAAATGGCTCTGCAGATGTGAAATTGTCTGT  338

seq1  TGCCATGGAAGAACAGCTGGAATCAGTTAATGAGTCAAGTCAGCATGAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGGAAGAACAGCTGGAATCAGTTAATGAGTCAAGTCAGCATGAGA  388

seq1  TGAAGTATAAGAGACTACAGAGCTTCATCTTCACTGTAGAAAGCTGGAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTATAAGAGACTACAGAGCTTCATCTTCACTGTAGAAAGCTGGAAA  438

seq1  AAAAGGTCCAGTAAAAGCCAAATCATGGTAAGAATGACCCTATGAGTAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCCAGTAAAAGCCAAATCATGGTAAGAATGACCCTATGAGTAAC  488

seq1  ACAGCTGTGAGCATCATTAGGCTTGTTTCCTACTGGCAAATGGAAATATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTGAGCATCATTAGGCTTGTTTCCTACTGGCAAATGGAAATATT  538

seq1  GTTCATCCTTTTTACACACAGATTTTAGTTACTAGCAGACAAGCATCTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCCTTTTTACACACAGATTTTAGTTACTAGCAGACAAGCATCTAG  588

seq1  TCTGTGAATAAACTTACTCATGCAAGATAGCCTCAAGAGACTAGGGAAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAATAAACTTACTCATGCAAGATAGCCTCAAGAGACTAGGGAAAA  638

seq1  TGCCCTTTACTTAGAGACCACAAGAATAAAGTACAATAAGGTATTTACCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTACTTAGAGACCACAAGAATAAAGTACAATAAGGTATTTACCC  688

seq1  ACACTTAAACAGGGAAAAAATTATCACTCTATTGGGATTTTATGATAATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAAACAGGGAAAAAATTATCACTCTATTGGGATTTTATGATAATA  738

seq1  ATCAGTCAATTCACTTAGTTTTTTTTTTTTCCTATTAGAGATGTATTCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAATTCACTTAGTTTTTTTTTTTTCCTATTAGAGATGTATTCTG  788

seq1  ACCAGGCACTCAATTTTTTATTAAAAATTCAAATGAGTTTTTTAAGTAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCACTCAATTTTTTATTAAAAATTCAAATGAGTTTTTTAAGTAGG  838

seq1  TAATTTACATATGCAAATTATAAATGAATAAGAAATGTTAAATATAAGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACATATGCAAATTATAAATGAATAAGAAATGTTAAATATAAGTT  888

seq1  TGTCATATCTTATTCATTCCTTGAAAAGGATTACATATTTTTGTAATAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATCTTATTCATTCCTTGAAAAGGATTACATATTTTTGTAATAAA  938

seq1  ATGCCTTGCAAAGCTCACTTTCAAAATCATTGTCTTAGGTAGTGTTTTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTGCAAAGCTCACTTTCAAAATCATTGTCTTAGGTAGTGTTTTCT  988

seq1  TTGTGCCCATGTGTTCAAGGATCTTCCCCACTTTCTTTTCTGTTAGTTTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCCATGTGTTCAAGGATCTTCCCCACTTTCTTTTCTGTTAGTTTC  1038

seq1  AGTGCATTCAGTTTTATGTGGAATTC  1070
      ||||||||||||||||||||||||||
seq2  AGTGCATTCAGTTTTATGTGGAATTC  1064


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