BAC Information

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BAC

Clone NameB6Ng01-177N18
Chromosome2 (Build37)
Map Location 169,863,358 - 170,033,725
singlet/doubletdoublet
Overlap geneLOC100043910, Zfp217
Upstream geneEG668954, Tshz2, LOC100043737
Downstream geneSilg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177N18.bB6Ng01-177N18.g
ACCGA005015GA005016
length1,062521
definitionB6Ng01-177N18.b B6Ng01-177N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,863,358 - 169,864,417)(170,033,199 - 170,033,725)
sequence
gaattctcaaacctggatctgtaaaagtcacagggcgagcttttaaagag
taaggactgggacttgggctcagtcagcgcccgcctgtcattccagcgct
gaagacagacacctgaactccccggggcctgccaaccagctagtccagcc
tagtcagggaatcaaagagagattaataattaattaattaaaagcaaata
aggtcagagccaggcttggtggccacgtgcctttcatcccagcgctcggg
aggcagagacagatagatctttgtgagtttcaggccagcctggtttatgg
agtgaggactgcagagtaagaccctttcttgaaagaaagaaaggaaggaa
ggaaaagaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
aggaaggaagattgggaagcaagtgagagacaacctagatgttgacctct
ggcctccatgtgcatacacacctgaacacacattatacacacacaacact
cacacacacacacacacacacacactcacacacacacacactcaccacac
acacacatacttacacacacactcaccacacacactcaccacacacacac
tcacacacacacacactcaccacacacacagaagcaatataggcaagctt
ggcagcgcatgtttgtaatcttgggaggctgaggcaggaagatggcaagt
aagcccaggttatccaaagaatgcaaggccagcctgatctacatagttaa
cagccctgtttccaaaaaaaatcagaaaggagaagaaaaggaaaagagaa
gctggtgctgtaagtgagtgacagagcttagcagcatgctcaagggcctg
ggttcttagccccaacattgctgctagtacaacagaataataaccatagt
tatatacatgagagagtgttttaagttccaacccagacctgactgaagtc
agaacttctctggtcaggcctgagcataggtttggttttggtttttggga
atttctttggtt

caggactacacagagaaacaccatctcgaaataaaagaaaagagagagag
agagagagagagagagagagagagagagagagagagagagagagaatgtc
tgtgtctgtacatataagtgcagtgcccaaggaggccagaagagggcgtc
agaacccctagtagagtttactggcgatccgtgcgctacctgacatggga
tctggaaattaagctggggtcctcagaaaagcaggccaatgttttaaagc
accaagtcgtctctccagccccttcccagtccactgcgccttcctctctt
gttgattggtttgagacatggtctcatacttaggccaggttcacctcgaa
ctcatggcactctttgggtctccagaagagcagccagtgcacttaaccgc
tgagtctccaccccagccattacttttaaagaggctccacacagagggtg
aaatctgggaaatgttatcaatggtattaattccggttgttgcttcattg
tttttatttgggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_169863358_169864417
seq2: B6Ng01-177N18.b_49_1110

seq1  GAATTCTCAAACCTGGATCTGTAAAAGTCACAGGGCGAGCTTTTAAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAACCTGGATCTGTAAAAGTCACAGGGCGAGCTTTTAAAGAG  50

seq1  TAAGGACTGGGACTTGGGCTCAGTCAGCGCCCGCCTGTCATTCCAGCGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACTGGGACTTGGGCTCAGTCAGCGCCCGCCTGTCATTCCAGCGCT  100

seq1  GAAGACAGACACCTGAACTCCCCGGGGCCTGCCAACCAGCTAGTCCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGACACCTGAACTCCCCGGGGCCTGCCAACCAGCTAGTCCAGCC  150

seq1  TAGTCAGGGAATCAAAGAGAGATTAATAATTAATTAATTAAAAGCAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGGAATCAAAGAGAGATTAATAATTAATTAATTAAAAGCAAATA  200

seq1  AGGTCAGAGCCAGGCTTGGTGGCCACGTGCCTTTCATCCCAGCGCTCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGAGCCAGGCTTGGTGGCCACGTGCCTTTCATCCCAGCGCTCGGG  250

seq1  AGGCAGAGACAGATAGATCTTTGTGAGTTTCAGGCCAGCCTGGTTTATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGACAGATAGATCTTTGTGAGTTTCAGGCCAGCCTGGTTTATGG  300

seq1  AGTGAGGACTGCAGAGTAAGACCCTTTCTTGAAAGAAAGAAAGGAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGACTGCAGAGTAAGACCCTTTCTTGAAAGAAAGAAAGGAAGGAA  350

seq1  GGAAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  400
      |||||||    |||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAG----AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  396

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  446

seq1  AGAAAGGAAGGAAGATTGGGAAGCAAGTGAGAGACAACCTAGATGTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAGGAAGATTGGGAAGCAAGTGAGAGACAACCTAGATGTTGAC  496

seq1  CTCTGGCCTCCATGTGCATACACACCTGAACACACATTATACACACACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCTCCATGTGCATACACACCTGAACACACATTATACACACACAA  546

seq1  CACTCACACACACACACACACACACACACTCACACACACACACACTCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACACACACACACACACACACACACTCACACACACACACACTCACC  596

seq1  ACACACACACATACTTACACACACACTCACCACACACACTCACCACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACATACTTACACACACACTCACCACACACACTCACCACACAC  646

seq1  ACACTCACACACACACACACTCACCACACACACAGAAGCAATATAGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACACACACACACTCACCACACACACAGAAGCAATATAGGCAA  696

seq1  GCTTGGCAGCGCATGTTTGTAATCTTGGGAGGCTGAGGCAGGAAGATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCAGCGCATGTTTGTAATCTTGGGAGGCTGAGGCAGGAAGATGGC  746

seq1  AAGTAAGCCCAGGTTATCCAAAGAATGCAAGGCCAGCCTGATCTACATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGCCCAGGTTATCCAAAGAATGCAAGGCCAGCCTGATCTACATAG  796

seq1  TTAACAG-CCTGTTTCCAAAAAAAATCAGAAAGGAGAAGAAAAGGAAAAG  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCCCTGTTTCCAAAAAAAATCAGAAAGGAGAAGAAAAGGAAAAG  846

seq1  AGAAGCTGGTGCTGTAAGTGAGTGACAGAGC-TAGCAGGCATGCTCAAGG  898
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  AGAAGCTGGTGCTGTAAGTGAGTGACAGAGCTTAGCA-GCATGCTCAAGG  895

seq1  GCCTGGGTTC-TAGCCCCAACATTGCTGCTAGACCAACAGAATAATAA-C  946
      |||||||||| |||||||||||||||||||||  |||||||||||||| |
seq2  GCCTGGGTTCTTAGCCCCAACATTGCTGCTAGTACAACAGAATAATAACC  945

seq1  ATAGTTATATACATGAGAGAGTG-TTTAAGTTCCAACCCAGA-CTGACTG  994
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  ATAGTTATATACATGAGAGAGTGTTTTAAGTTCCAACCCAGACCTGACTG  995

seq1  AAGTCAGA--CTCTCTGGTCAGGCCTGAGCATCCGGGTTTTGGGTTTTGG  1042
      ||||||||   |||||||||||||||||||||   |||||  ||||||||
seq2  AAGTCAGAACTTCTCTGGTCAGGCCTGAGCAT--AGGTTT--GGTTTTGG  1041

seq1  TTTTTGG--ATTT-TTTGGTT  1060
      |||||||  |||| |||||||
seq2  TTTTTGGGAATTTCTTTGGTT  1062


seq1: chr2_170033199_170033725
seq2: B6Ng01-177N18.g_68_594 (reverse)

seq1  CCCCCCCCCCCCAAATAAAAACAATGAAGCAACAACCGGAATTAATACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCAAATAAAAACAATGAAGCAACAACCGGAATTAATACCA  50

seq1  TTGATAACATTTCCCAGATTTCACCCTCTGTGTGGAGCCTCTTTAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAACATTTCCCAGATTTCACCCTCTGTGTGGAGCCTCTTTAAAAGT  100

seq1  AATGGCTGGGGTGGAGACTCAGCGGTTAAGTGCACTGGCTGCTCTTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGGGGTGGAGACTCAGCGGTTAAGTGCACTGGCTGCTCTTCTGG  150

seq1  AGACCCAAAGAGTGCCATGAGTTCGAGGTGAACCTGGCCTAAGTATGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAAAGAGTGCCATGAGTTCGAGGTGAACCTGGCCTAAGTATGAGA  200

seq1  CCATGTCTCAAACCAATCAACAAGAGAGGAAGGCGCAGTGGACTGGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTCAAACCAATCAACAAGAGAGGAAGGCGCAGTGGACTGGGAAG  250

seq1  GGGCTGGAGAGACGACTTGGTGCTTTAAAACATTGGCCTGCTTTTCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGAGAGACGACTTGGTGCTTTAAAACATTGGCCTGCTTTTCTGAG  300

seq1  GACCCCAGCTTAATTTCCAGATCCCATGTCAGGTAGCGCACGGATCGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGCTTAATTTCCAGATCCCATGTCAGGTAGCGCACGGATCGCCA  350

seq1  GTAAACTCTACTAGGGGTTCTGACGCCCTCTTCTGGCCTCCTTGGGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTCTACTAGGGGTTCTGACGCCCTCTTCTGGCCTCCTTGGGCACT  400

seq1  GCACTTATATGTACAGACACAGACATTCTCTCTCTCTCTCTCTCTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTATATGTACAGACACAGACATTCTCTCTCTCTCTCTCTCTCTCTC  450

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTTTTATTTCGAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTTTTATTTCGAGATG  500

seq1  GTGTTTCTCTGTGTAGTCCTGGAATTC  527
      |||||||||||||||||||||||||||
seq2  GTGTTTCTCTGTGTAGTCCTGGAATTC  527


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