BAC Information

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BAC

Clone NameB6Ng01-178A12
Chromosome2 (Build37)
Map Location 70,274,023 - 70,390,424
singlet/doubletdoublet
Overlap geneLOC100040021, Sp5, 4933404M02Rik
Upstream geneLrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b
Downstream geneLOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1, Mettl8, 4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178A12.bB6Ng01-178A12.g
ACCGA005137GA005138
length1,1431,033
definitionB6Ng01-178A12.b B6Ng01-178A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,389,278 - 70,390,424)(70,274,023 - 70,275,062)
sequence
gaattcagacgcatgtgggaggagaacggagcccctaggatgagccgaca
ctgtacagttcctcctctcctcctctctgtgaggtcatctagtcacgtga
ctttaaatgccgttcctatttatgaatattcacatctttcccccaacatt
acaggttcatatgtttcgtggagcctttccacttacatttttaataacag
gtactctaaactatcccaaattaaactctcgattctttccccaaatgtat
tatgaccttttccacctcagtaaatgagagcgagacatctctgtctttct
agctggcataagcaaacatcttggagtcatccctgtctctgccctttcaa
ttgtggtaaatcattggatctactttcaaatttcatccacatctcaggtt
ctgcgcctacagccctcattctcctccccacggccggcaacactaggatc
catgatggatttcctctatgtgatgttctctgaggcccttgtctagagtt
aggcccaggtctttacctgccactgctacattcaaagtacttctagggcc
ccagtcttagtgaagcccaggtaattgcagtgttcctaactgttgtgatg
tatctaccagagagcaccactcagacatgggttcaagccaacagaaggtc
tttattaggccaccagcgactgcactgggtgtttgggaccagtgtgtagt
cctgagcctttctcagggtgagcttttaagcacaaaaaccacatcctggg
ttgacatggctcagttaacaagaatagctagccagaaatagaactacaca
gaagtcaaaaaagcaagtagtacatttaaagactttcccagaactatgga
ctttgatggattaggttttccttttcatttttggcaggcggtgctgcctg
cttgcttggctcccatgcctggatgagagggcagttatggcgtaagtcat
gctaaggcctgggccctgttaccttaccagtgctcaagcccccaggatgc
tggacttcaatctggaaatgctgttccgtgctgctcttctgctgttttcc
tgactgtgtaagcatcttcaatttctgggcttgcaatcatcaactgaatt
gtagaagttccccccatcccctgctatgcataagctttattcc
gaattctcttttcacattctgatttgattttcttattgtgttcagctgtt
tgtgttttcttggaattcattcaggagattattcatatcccctttgaatt
ccttcatgtgtttgttaatgtcctttttggaatccttgaacatatttata
atcattcttttgaattctttgcctagaatgtcatctttgtcacggtcatt
ggaagccattacaatgggattggtcattttccaccttggctttttacatt
ccttgtgtgtttacactgggattttcccatctggcatgagattgttgaga
cttcctggcactcctaggttatgtttgtttggtgcttggtagctctgcct
catgagtcttgagtagatttggttgcttgaggttcagctgtgaagagact
cagtgttgattcatgaaaggtattgatgaaaaaaaaaaaagaagaagaag
aagaaaggtattgatgaaggtgaccaaggttttgtggaataagccttgac
cttttaaactggaatcagtgcagtagggtactggagttttccagaagtga
ttccatgtgttctctgataattagaaccatgttttatacatgtaagctgg
agactccacaacctctaactccatgagctagatgtgtaaggagcattgtt
ggtgtacgccaggtatgggtggctcatttccccagtcaaagagcatgccc
aatggcagaggtatgtaaaggggattagagagggtattgtcttatgggtt
gtcttatgaggtgccctgaagggatctgggagttccagagccctctgctt
gcctggtagttgagtgggcagagtgatgaaagtgtgtcctgaaggcagga
gggccagggaccttggacagatgaggatgagaccctcttacctttcctag
ttcagtgatggctgggggcaggaggaatattcccagagacagaggtctgg
aaacctttctttgtcacgtgttaggaatgtggttgtgagctcttccatta
gtttatggcactgaacagagtaagacagcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_70389278_70390424
seq2: B6Ng01-178A12.b_48_1190 (reverse)

seq1  GGAATAAACCTTATGCATAGCAGGGGATGGGGGGAAACTCTACAA-TCAG  49
      |||||||| |||||||||||||||||||||||||||  ||||||| ||||
seq2  GGAATAAAGCTTATGCATAGCAGGGGATGGGGGGAACTTCTACAATTCAG  50

seq1  GTGATGATTGCAAAGCCCCAGAAATGGAAGGATGCCTACAACAGTCAGGA  99
       ||||||||||||   ||||||||| ||| ||||| ||| ||||||||||
seq2  TTGATGATTGCAA--GCCCAGAAATTGAA-GATGCTTAC-ACAGTCAGGA  96

seq1  AAACAGCAAGAAGAGCAGCACGGAACAGCATTTCCAGATTGAAGTCCAGC  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGC-AGAAGAGCAGCACGGAACAGCATTTCCAGATTGAAGTCCAGC  145

seq1  ATCCTGGGGGCCTGAGCACTGGTAAGGTAACAGGGCCCAGGCCTTAGCAT  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGGGCTTGAGCACTGGTAAGGTAACAGGGCCCAGGCCTTAGCAT  195

seq1  GACTTACGCCATAACTGCCCTCTCATCCAGGCATGGGAGCCAAGCAAGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACGCCATAACTGCCCTCTCATCCAGGCATGGGAGCCAAGCAAGCA  245

seq1  GGCAGCACCGCCTGCCAAAAATGAAAAGGAAAACCTAATCCATCAAAGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCACCGCCTGCCAAAAATGAAAAGGAAAACCTAATCCATCAAAGTC  295

seq1  CATAGTTCTGGGAAAGTCTTTAAATGTACTACTTGCTTTTTTGACTTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCTGGGAAAGTCTTTAAATGTACTACTTGCTTTTTTGACTTCTG  345

seq1  TGTAGTTCTATTTCTGGCTAGCTATTCTTGTTAACTGAGCCATGTCAACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCTATTTCTGGCTAGCTATTCTTGTTAACTGAGCCATGTCAACC  395

seq1  CAGGATGTGGTTTTTGTGCTTAAAAGCTCACCCTGAGAAAGGCTCAGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTGGTTTTTGTGCTTAAAAGCTCACCCTGAGAAAGGCTCAGGAC  445

seq1  TACACACTGGTCCCAAACACCCAGTGCAGTCGCTGGTGGCCTAATAAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACTGGTCCCAAACACCCAGTGCAGTCGCTGGTGGCCTAATAAAGA  495

seq1  CCTTCTGTTGGCTTGAACCCATGTCTGAGTGGTGCTCTCTGGTAGATACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTTGGCTTGAACCCATGTCTGAGTGGTGCTCTCTGGTAGATACA  545

seq1  TCACAACAGTTAGGAACACTGCAATTACCTGGGCTTCACTAAGACTGGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAGTTAGGAACACTGCAATTACCTGGGCTTCACTAAGACTGGGG  595

seq1  CCCTAGAAGTACTTTGAATGTAGCAGTGGCAGGTAAAGACCTGGGCCTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGAAGTACTTTGAATGTAGCAGTGGCAGGTAAAGACCTGGGCCTAA  645

seq1  CTCTAGACAAGGGCCTCAGAGAACATCACATAGAGGAAATCCATCATGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGACAAGGGCCTCAGAGAACATCACATAGAGGAAATCCATCATGGA  695

seq1  TCCTAGTGTTGCCGGCCGTGGGGAGGAGAATGAGGGCTGTAGGCGCAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTGTTGCCGGCCGTGGGGAGGAGAATGAGGGCTGTAGGCGCAGAA  745

seq1  CCTGAGATGTGGATGAAATTTGAAAGTAGATCCAATGATTTACCACAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATGTGGATGAAATTTGAAAGTAGATCCAATGATTTACCACAATT  795

seq1  GAAAGGGCAGAGACAGGGATGACTCCAAGATGTTTGCTTATGCCAGCTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCAGAGACAGGGATGACTCCAAGATGTTTGCTTATGCCAGCTAG  845

seq1  AAAGACAGAGATGTCTCGCTCTCATTTACTGAGGTGGAAAAGGTCATAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGAGATGTCTCGCTCTCATTTACTGAGGTGGAAAAGGTCATAAT  895

seq1  ACATTTGGGGAAAGAATCGAGAGTTTAATTTGGGATAGTTTAGAGTACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGGGAAAGAATCGAGAGTTTAATTTGGGATAGTTTAGAGTACCT  945

seq1  GTTATTAAAAATGTAAGTGGAAAGGCTCCACGAAACATATGAACCTGTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAAAAATGTAAGTGGAAAGGCTCCACGAAACATATGAACCTGTAA  995

seq1  TGTTGGGGGAAAGATGTGAATATTCATAAATAGGAACGGCATTTAAAGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGGGAAAGATGTGAATATTCATAAATAGGAACGGCATTTAAAGTC  1045

seq1  ACGTGACTAGATGACCTCACAGAGAGGAGGAGAGGAGGAACTGTACAGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGACTAGATGACCTCACAGAGAGGAGGAGAGGAGGAACTGTACAGTG  1095

seq1  TCGGCTCATCCTAGGGGCTCCGTTCTCCTCCCACATGCGTCTGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTCATCCTAGGGGCTCCGTTCTCCTCCCACATGCGTCTGAATTC  1143

seq1: chr2_70274023_70275062
seq2: B6Ng01-178A12.g_64_1096

seq1  GAATTCTCTTTTCACATTCTGATTTGATTTTCTTATTGTGTTCAGCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTCACATTCTGATTTGATTTTCTTATTGTGTTCAGCTGTT  50

seq1  TGTGTTTTCTTGGAATTCATTCAGGAGATTATTCATATCCCCTTTGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCTTGGAATTCATTCAGGAGATTATTCATATCCCCTTTGAATT  100

seq1  CCTTCATGTGTTTGTTAATGTCCTTTTTGGAATCCTTGAACATATTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGTGTTTGTTAATGTCCTTTTTGGAATCCTTGAACATATTTATA  150

seq1  ATCATTCTTTTGAATTCTTTGCCTAGAATGTCATCTTTGTCACGGTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTTTTGAATTCTTTGCCTAGAATGTCATCTTTGTCACGGTCATT  200

seq1  GGAAGCCATTACAATGGGATTGGTCATTTTCCACCTTGGCTTTTTACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCATTACAATGGGATTGGTCATTTTCCACCTTGGCTTTTTACATT  250

seq1  CCTTGTGTGTTTACACTGGGATTTTCCCATCTGGCATGAGATTGTTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTGTTTACACTGGGATTTTCCCATCTGGCATGAGATTGTTGAGA  300

seq1  CTTCCTGGCACTCCTAGGTTATGTTTGTTTGGTGCTTGGTAGCTCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGCACTCCTAGGTTATGTTTGTTTGGTGCTTGGTAGCTCTGCCT  350

seq1  CATGAGTCTTGAGTAGATTTGGTTGCTTGAGGTTCAGCTGTGAAGAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTCTTGAGTAGATTTGGTTGCTTGAGGTTCAGCTGTGAAGAGACT  400

seq1  CAGTGTTGATTCATGAAAGGTATTGATGAAAAAAAAAAAAGAAGAAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGATTCATGAAAGGTATTGATGAAAAAAAAAAAAGAAGAAGAAG  450

seq1  AAGAAAGGTATTGATGAAGGTGACCAAGGTTTTGTGGAATAAGCCTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGTATTGATGAAGGTGACCAAGGTTTTGTGGAATAAGCCTTGAC  500

seq1  CTTTTAAACTGGAATCAGTGCAGTAGGGTACTGGAGTTTTCCAGAAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAACTGGAATCAGTGCAGTAGGGTACTGGAGTTTTCCAGAAGTGA  550

seq1  TTCCATGTGTTCTCTGATAATTAGAACCATGTTTTATACATGTAAGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTGTTCTCTGATAATTAGAACCATGTTTTATACATGTAAGCTGG  600

seq1  AGACTCCACAACCTCTAACTCCATGAGCTAGATGTGTAAGGAGCATTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCACAACCTCTAACTCCATGAGCTAGATGTGTAAGGAGCATTGTT  650

seq1  GGTGTACGCCAGGTATGGGTGGCTCATTTCCCCAGTCAAAGAGCATGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACGCCAGGTATGGGTGGCTCATTTCCCCAGTCAAAGAGCATGCCC  700

seq1  AATGGCAGAGGTATGTAAAGGGGATTAGAGAGGGTATTGTCTTATGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGAGGTATGTAAAGGGGATTAGAGAGGGTATTGTCTTATGGGTT  750

seq1  GTCTTATGAGGTGCCCTGAAGGGATCTGGGAGTTCCAGAGCCCTCTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATGAGGTGCCCTGAAGGGATCTGGGAGTTCCAGAGCCCTCTGCTT  800

seq1  GCCTGGTAGTTGAGTGGGCAGAGTGATGAAAGTGTGTCCTGAAGGCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTAGTTGAGTGGGCAGAGTGATGAAAGTGTGTCCTGAAGGCAGGA  850

seq1  -GGCCAGGGACCTTGGACAGATGAGGATGAGAACCTCTTACCTTTCCTAG  899
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGCCAGGGACCTTGGACAGATGAGGATGAGACCCTCTTACCTTTCCTAG  900

seq1  -TCAGTGATGGCTGGGGGCAGGAGGAATATTCCCCAGAGACAGAGGGTCT  948
       |||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TTCAGTGATGGCTGGGGGCAGGAGGAATATT-CCCAGAGACAGA-GGTCT  948

seq1  GGAAACCCTTTCTTTGTCCACAGTGTTTAGGAATGTGGTTGTTGAGCTCT  998
      ||||| ||||||||||| ||| ||| ||||||||||||||| ||||||||
seq2  GGAAA-CCTTTCTTTGT-CAC-GTG-TTAGGAATGTGGTTG-TGAGCTCT  993

seq1  TCCAATAGTTTATGGCACTGACAAGAAGTAAGACAAGCACAG  1040
      |||| ||||||||||||||||  || |||||||| |||||||
seq2  TCCATTAGTTTATGGCACTGAACAG-AGTAAGAC-AGCACAG  1033