BAC Information

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BAC

Clone NameB6Ng01-178H23
Chromosome2 (Build37)
Map Location 162,818,087 - 162,948,845
singlet/doubletdoublet
Overlap geneSgk2, Ift52, Mybl2, 2410116G06Rik
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765
Downstream geneLOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178H23.bB6Ng01-178H23.g
ACCGA005468GA005469
length1,1271,023
definitionB6Ng01-178H23.b B6Ng01-178H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,947,706 - 162,948,845)(162,818,087 - 162,819,113)
sequence
gaattccagaggatgtgggtacctctgccgctggcctcctttgtgtgtgt
gtgtctttgtttataattgtgcatgtgccaccaatagcaacagcctcacc
ccattcccgcccccagcaatgctctgcatcatctctgctcccctgctcag
tgggttcttgctcttctctttgtgcctgttcttacgatgggagggggcat
cagtgaaggacggcctgccccaggagattgcacttacctgagagaacatg
tatttcctaaagtcagagaactgtttgctaacaacacagggaactgtgat
taaccccctctctcctccggggagatcttacctgcccctccacaaattat
aaaggaagaactattagaagtatattccagatcaaattgtgtcctcagag
aagagctgtcacagcgttcactgtgggaactgagaatctcatctcagctg
gaaacagggtcactgggctgtgcttagtctggctgggcgccgagtggagt
cacgtgggtgcctgacgccacctggactggtccttacaagagcagaccca
taggcagggaggtgtaccatgtgacaacagagacagactggactggctga
ggaacacaagccagggcaacattcctctccgttacttgatttacacattt
gttctcttcagcccccagctggtggctggaaacatcagccatagagcgct
gcacgggcagagccacctcattctccaccggaagacagtgcatttcctct
tggggttctcctgctgggaaagggaaaaccttcagcctggtgccagtcag
agagagagcttgacttcaagagagatttcacacagttctggcagcttgtt
aagatgtacagacttaagccgggcggtgtcgcgcacgcctttaatcccag
cacttgggaggcagaggagttcgaggccaggctggtctacaaagtgagtt
ccaggacagccagggctatacagagaaacctgtctcgaaaaccaaaaaaa
acagaacaaaaagattacagacttgtaagactgcagactgcagactgcag
aactggcagagccttgacaggacactaagctagacacggcacttgttctt
tattcaactgacctcatgttaggaccc
gaattcagggttgccaatatgcttaggtgggagtctggaaagcccatcta
cccataaaaggtgagaccctagaaagtccttttctaaatcaagcgtggta
gcccgttttcaaattctcaccacgtgggaggctaaggcagttctaggcca
acctaggacatgtagcaagctcaaggccagcatgggctccagaacaagat
cctgtctaaaacaatagagaaacaaaaccacataaggccttttaaaagat
tttgggtgcctccctgagaactacaggggagtattcagctttaggcctgc
aagggtccttcctgctctggaactttctgtgaaccacagggttttcctgt
cctgggtgtccccaacctttgcagagaccccaccaggcaggggtcaccct
atctgtccccgtccaccccactgaattgtttggtgagaaaggctgggctg
gcaaatgtcatttgtctcgcccatacatggactgctggcctttggggtgg
gagttactaaggctgtatttgaaaggccaagggggcagccctgcctggag
gccaagctccatcattcctgttcttccctgtgccccccagagcctacctg
atcacagctccagaatggcctccagcccagttggagttcctagcccacag
gtaaacggttcttgatcctcctcccaatacccagcatcctgcaccaggga
cttcctttctcccaaggctgaggaaatctatggagatcctggccagcccc
acgggctttcaaccagaacttggatcttccaggttactgtgggttcactg
agacggccatttgcaaggaaaagtgaagagagatttagctggggggttat
aagaagtagatttgggttagaaaaaatatgagactggttttgaaaataca
taggttcaagtcccaccctggctacctgtaagaccttgaacaactacttc
tggcttccttttttttttttttaagatgattgatgattgattgatgattg
attaatgatatggagacactgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_162947706_162948845
seq2: B6Ng01-178H23.b_44_1170 (reverse)

seq1  GGGTCCTAACATGAGGTTCAGGTTTAAATAAAAGACAAGTGCGGTGTCTA  50
      |||||||||||||||| ||||  || ||||||  |||||||| |||||||
seq2  GGGTCCTAACATGAGG-TCAG--TTGAATAAAGAACAAGTGCCGTGTCTA  47

seq1  GCTAAGTGGTCCTGGTCAAAGCTCCTGCCTG-TCTGCAGTCTGCAGTCTG  99
      ||| ||| ||||| ||||| ||| ||||| | ||||||||||||||||||
seq2  GCTTAGT-GTCCT-GTCAAGGCT-CTGCCAGTTCTGCAGTCTGCAGTCTG  94

seq1  CAGTCTTACAAGTCTGTAAATCTTTTTTTTTTTTTTTTTTTTTTTTGGTT  149
      ||||||||||||||||| ||||||||| || | ||||||||      | |
seq2  CAGTCTTACAAGTCTGT-AATCTTTTTGTTCTGTTTTTTTT------GGT  137

seq1  TTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGACA-GGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT  186

seq1  TGTAGACCAGCCTGGCCTCGAACTCCTCTGCCTCCCAAGTGCTGGGATTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGCCTGGCCTCGAACTCCTCTGCCTCCCAAGTGCTGGGATTA  236

seq1  AAGGCGTGCGCGACACCGCCCGGCTTAAGTCTGTACATCTTAACAAGCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTGCGCGACACCGCCCGGCTTAAGTCTGTACATCTTAACAAGCTG  286

seq1  CCAGAACTGTGTGAAATCTCTCTTGAAGTCAAGCTCTCTCTCTGACTGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACTGTGTGAAATCTCTCTTGAAGTCAAGCTCTCTCTCTGACTGGC  336

seq1  ACCAGGCTGAAGGTTTTCCCTTTCCCAGCAGGAGAACCCCAAGAGGAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGAAGGTTTTCCCTTTCCCAGCAGGAGAACCCCAAGAGGAAAT  386

seq1  GCACTGTCTTCCGGTGGAGAATGAGGTGGCTCTGCCCGTGCAGCGCTCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTCTTCCGGTGGAGAATGAGGTGGCTCTGCCCGTGCAGCGCTCTA  436

seq1  TGGCTGATGTTTCCAGCCACCAGCTGGGGGCTGAAGAGAACAAATGTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATGTTTCCAGCCACCAGCTGGGGGCTGAAGAGAACAAATGTGTA  486

seq1  AATCAAGTAACGGAGAGGAATGTTGCCCTGGCTTGTGTTCCTCAGCCAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTAACGGAGAGGAATGTTGCCCTGGCTTGTGTTCCTCAGCCAGT  536

seq1  CCAGTCTGTCTCTGTTGTCACATGGTACACCTCCCTGCCTATGGGTCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGTCTCTGTTGTCACATGGTACACCTCCCTGCCTATGGGTCTGC  586

seq1  TCTTGTAAGGACCAGTCCAGGTGGCGTCAGGCACCCACGTGACTCCACTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAAGGACCAGTCCAGGTGGCGTCAGGCACCCACGTGACTCCACTC  636

seq1  GGCGCCCAGCCAGACTAAGCACAGCCCAGTGACCCTGTTTCCAGCTGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCCAGCCAGACTAAGCACAGCCCAGTGACCCTGTTTCCAGCTGAGA  686

seq1  TGAGATTCTCAGTTCCCACAGTGAACGCTGTGACAGCTCTTCTCTGAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCTCAGTTCCCACAGTGAACGCTGTGACAGCTCTTCTCTGAGGA  736

seq1  CACAATTTGATCTGGAATATACTTCTAATAGTTCTTCCTTTATAATTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTGATCTGGAATATACTTCTAATAGTTCTTCCTTTATAATTTGT  786

seq1  GGAGGGGCAGGTAAGATCTCCCCGGAGGAGAGAGGGGGTTAATCACAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCAGGTAAGATCTCCCCGGAGGAGAGAGGGGGTTAATCACAGTT  836

seq1  CCCTGTGTTGTTAGCAAACAGTTCTCTGACTTTAGGAAATACATGTTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTTGTTAGCAAACAGTTCTCTGACTTTAGGAAATACATGTTCTC  886

seq1  TCAGGTAAGTGCAATCTCCTGGGGCAGGCCGTCCTTCACTGATGCCCCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAAGTGCAATCTCCTGGGGCAGGCCGTCCTTCACTGATGCCCCCT  936

seq1  CCCATCGTAAGAACAGGCACAAAGAGAAGAGCAAGAACCCACTGAGCAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCGTAAGAACAGGCACAAAGAGAAGAGCAAGAACCCACTGAGCAGG  986

seq1  GGAGCAGAGATGATGCAGAGCATTGCTGGGGGCGGGAATGGGGTGAGGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAGATGATGCAGAGCATTGCTGGGGGCGGGAATGGGGTGAGGCT  1036

seq1  GTTGCTATTGGTGGCACATGCACAATTATAAACAAAGACACACACACACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTATTGGTGGCACATGCACAATTATAAACAAAGACACACACACACA  1086

seq1  AAGGAGGCCAGCGGCAGAGGTACCCACATCCTCTGGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGCCAGCGGCAGAGGTACCCACATCCTCTGGAATTC  1127

seq1: chr2_162818087_162819113
seq2: B6Ng01-178H23.g_67_1089

seq1  GAATTCAGGGTTGCCAATATGCTTAGGTGGGAGTCTGGAAAGCCCATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTTGCCAATATGCTTAGGTGGGAGTCTGGAAAGCCCATCTA  50

seq1  CCCATAAAAGGTGAGACCCTAGAAAGTCCTTTTCTAAATCAAGCGTGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAAAGGTGAGACCCTAGAAAGTCCTTTTCTAAATCAAGCGTGGTA  100

seq1  GCCCGTTTTCAAATTCTCACCACGTGGGAGGCTAAGGCAGTTCTAGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTTTTCAAATTCTCACCACGTGGGAGGCTAAGGCAGTTCTAGGCCA  150

seq1  ACCTAGGACATGTAGCAAGCTCAAGGCCAGCATGGGCTCCAGAACAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGACATGTAGCAAGCTCAAGGCCAGCATGGGCTCCAGAACAAGAT  200

seq1  CCTGTCTAAAACAATAGAGAAACAAAACCACATAAGGCCTTTTAAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTAAAACAATAGAGAAACAAAACCACATAAGGCCTTTTAAAAGAT  250

seq1  TTTGGGTGCCTCCCTGAGAACTACAGGGGAGTATTCAGCTTTAGGCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTGCCTCCCTGAGAACTACAGGGGAGTATTCAGCTTTAGGCCTGC  300

seq1  AAGGGTCCTTCCTGCTCTGGAACTTTCTGTGAACCACAGGGTTTTCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCCTTCCTGCTCTGGAACTTTCTGTGAACCACAGGGTTTTCCTGT  350

seq1  CCTGGGTGTCCCCAACCTTTGCAGAGACCCCACCAGGCAGGGGTCACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGTCCCCAACCTTTGCAGAGACCCCACCAGGCAGGGGTCACCCT  400

seq1  ATCTGTCCCCGTCCACCCCACTGAATTGTTTGGTGAGAAAGGCTGGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCCCCGTCCACCCCACTGAATTGTTTGGTGAGAAAGGCTGGGCTG  450

seq1  GCAAATGTCATTTGTCTCGCCCATACATGGACTGCTGGCCTTTGGGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGTCATTTGTCTCGCCCATACATGGACTGCTGGCCTTTGGGGTGG  500

seq1  GAGTTACTAAGGCTGTATTTGAAAGGCCAAGGGGGCAGCCCTGCCTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTAAGGCTGTATTTGAAAGGCCAAGGGGGCAGCCCTGCCTGGAG  550

seq1  GCCAAGCTCCATCATTCCTGTTCTTCCCTGTGCCCCCCAGAGCCTACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTCCATCATTCCTGTTCTTCCCTGTGCCCCCCAGAGCCTACCTG  600

seq1  ATCACAGCTCCAGAATGGCCTCCAGCCCAGTTGGAGTTCCTAGCCCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCTCCAGAATGGCCTCCAGCCCAGTTGGAGTTCCTAGCCCACAG  650

seq1  GTAAACGGTTCTTGATCCTCCTCCCAATACCCAGCATCCTGCACCAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACGGTTCTTGATCCTCCTCCCAATACCCAGCATCCTGCACCAGGGA  700

seq1  CTTCCTTTCTCCCAAGGCTGAGGAAATCTATGGAGATCCTGGCCAGCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTCTCCCAAGGCTGAGGAAATCTATGGAGATCCTGGCCAGCCCC  750

seq1  ACGGGCTTTCAACCAGAACTTGGATCTTCCAGGTTACTGTGGGTTCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCTTTCAACCAGAACTTGGATCTTCCAGGTTACTGTGGGTTCACTG  800

seq1  AGACGGCCATTTGCAAGGAAAAGTGAAGAGAGATTTAGCT-GGGGGTTAT  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGACGGCCATTTGCAAGGAAAAGTGAAGAGAGATTTAGCTGGGGGGTTAT  850

seq1  AAGAAGTAGATTT-GGTTAGAAAAAAATATGAGACTGGTTTTGAAAATAC  898
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  AAGAAGTAGATTTGGGTTAG-AAAAAATATGAGACTGGTTTTGAAAATAC  899

seq1  ATAGGTTCAAGTCCCACCCTGGCTACCTGTAAGACCTTGAACAACTACTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTCAAGTCCCACCCTGGCTACCTGTAAGACCTTGAACAACTACTT  949

seq1  CTGGCTTCCCTTTTTTTTTTTTTAAGATTGATTGATTGATTGATTGATTG  998
      ||||||||| ||||||||||||||||| ||||||| ||||||||||| ||
seq2  CTGGCTTCCTTTTTTTTTTTTTTAAGA-TGATTGA-TGATTGATTGA-TG  996

seq1  ATTGATTTAATGTATATGAGTACACTGTA  1027
      ||||| |||||| |||||   ||||||||
seq2  ATTGA-TTAATG-ATATGGAGACACTGTA  1023