BAC Information

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BAC

Clone NameB6Ng01-178I13
Chromosome2 (Build37)
Map Location 32,614,058 - 32,732,868
singlet/doubletdoublet
Overlap geneTor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik
Upstream geneAbl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c
Downstream geneLrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178I13.bB6Ng01-178I13.g
ACCGA005495GA005496
length1,191892
definitionB6Ng01-178I13.b B6Ng01-178I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,614,058 - 32,615,247)(32,731,978 - 32,732,868)
sequence
gaattcaccataaacccaggctggcctttgattgggaggattactgctgc
ctctgcctcccaggggctgagctgacagacatgagtcaacagcctgtcat
ctgctttgatatgcgttccttctgtggccctaggtctggaatgtgacctg
gctcaacacctggctggccagcatttggccaaggccctggtggtgaagtc
actgaaggcctttgtacaggacccagcccccagcaagccgttggtccttt
ccctgcacggctggacaggcaccgggaagtcctacgttagctccctgctg
gcacagcatctcttccgggatggccttcgcagccctcacgtccatcactt
ctcccctatcatccatttcccacatcccagccgcactgagcagtacaagg
taggccagatgtgtcctggtcccttttctccatcctaatccagagagggc
tccaaaacacacagccagttggaggctcagccttcagaacctgttaggaa
caggggtggtggcagtcttgttgcctgtgagtccgagacatcatgagcct
tggggattaccccgggcagatattacacagggtacctgtgtctgtgttag
catcctctcttaagctcttagccccatatggtgctttggcaagcattccc
tggtgactgtcagctctgatatctgttgttcctgatctgtcttagctgtc
aacactgggggggcaggtctgacctcccctgtcagaagtcacttagctct
catgaacagacaattgagtacatatttgtacccctgttctcctgttgact
ggctgtgtgactttggacaagtctctgcacctctctgaactaccctttta
ccatctgtctcaaggggttggtgccatctggatatagattgtgtctcttc
ggaatttttcttggcttgggaagaagttccgggttgccgggagtggagtg
tcttggactctttggaatttcttgtctctactctcatagaaggagctcag
agctgggttcaggggaacctcactgcctgtgccgatccctttcctcttcg
atgagaatggaacagctgccttctggctgatggaggtcctgcagcccttc
ctgggccttcttgggctgtgtatggaccaactatcgcaagccatcttcaa
ctctttatcaggtcctggtccttctattggcaagcgaagtg
agccagccattgtctacagccacaactacatggtgagaccctggctggga
aaaccaaaacaaaagagactggctcaggatcacacacttgggagagaagc
tgaaattacattcaggaccgccaggcctgacttgcctgtggtcagccaag
ctttgttttgggatagcctgagattctcaccccatctcccactccctaca
atgagcccaggatcctgcactccacagacttgggagcaactccctctaga
gaagtgtccaccgcgcagtgacaggctgagagcaaggctggcagaaggaa
ggtactgagaggtactgagagactgaactctggctctgagagaaccagct
ctggccataaacagaccccctaggctgtagtgccagcactctgctgaggt
aaagcccaaagacagggacccgccccttcaagggcaccccatctctcctt
agccccactctccacattcggtccccggctctctaagggcccatccccct
gtaagcttcagccacgtgtacccggactgaggccagggcgaggaggaaca
aggcagctgaggggggagtctggaaggtctgactctgtggggcagagtcc
agagtagaggttaggcttggaacgttgttgggaaagatggggggcgcgac
ccctccgccacgcctgtaagtgcatggttctggccaggctgggctccaag
gggagcagtgggatccagtagagaaatgggatcccaggctcctcaaaggg
tgaaaggagcatacagaagggcctggaagggccgtccagaccgagagaga
acaagttcggaggaagagtaagggtctggcccgctctcgtcccgacctgg
gccttgactctcgagtaccgctccccatgagatcggaggcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_32614058_32615247
seq2: B6Ng01-178I13.b_49_1239

seq1  GAATTCACCATAAACCCAGGCTGGCCTTTGATTGGGAGGATTACTGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATAAACCCAGGCTGGCCTTTGATTGGGAGGATTACTGCTGC  50

seq1  CTCTGCCTCCCAGGGGCTGAGCTGACAGACATGAGTCAACAGCCTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAGGGGCTGAGCTGACAGACATGAGTCAACAGCCTGTCAT  100

seq1  CTGCTTTGATATGCGTTCCTTCTGTGGCCCTAGGTCTGGAATGTGACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGATATGCGTTCCTTCTGTGGCCCTAGGTCTGGAATGTGACCTG  150

seq1  GCTCAACACCTGGCTGGCCAGCATTTGGCCAAGGCCCTGGTGGTGAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACACCTGGCTGGCCAGCATTTGGCCAAGGCCCTGGTGGTGAAGTC  200

seq1  ACTGAAGGCCTTTGTACAGGACCCAGCCCCCAGCAAGCCGTTGGTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGCCTTTGTACAGGACCCAGCCCCCAGCAAGCCGTTGGTCCTTT  250

seq1  CCCTGCACGGCTGGACAGGCACCGGGAAGTCCTACGTTAGCTCCCTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCACGGCTGGACAGGCACCGGGAAGTCCTACGTTAGCTCCCTGCTG  300

seq1  GCACAGCATCTCTTCCGGGATGGCCTTCGCAGCCCTCACGTCCATCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCATCTCTTCCGGGATGGCCTTCGCAGCCCTCACGTCCATCACTT  350

seq1  CTCCCCTATCATCCATTTCCCACATCCCAGCCGCACTGAGCAGTACAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTATCATCCATTTCCCACATCCCAGCCGCACTGAGCAGTACAAGG  400

seq1  TAGGCCAGATGTGTCCTGGTCCCTTTTCTCCATCCTAATCCAGAGAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCAGATGTGTCCTGGTCCCTTTTCTCCATCCTAATCCAGAGAGGGC  450

seq1  TCCAAAACACACAGCCAGTTGGAGGCTCAGCCTTCAGAACCTGTTAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACACACAGCCAGTTGGAGGCTCAGCCTTCAGAACCTGTTAGGAA  500

seq1  CAGGGGTGGTGGCAGTCTTGTTGCCTGTGAGTCCGAGACATCATGAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTGGTGGCAGTCTTGTTGCCTGTGAGTCCGAGACATCATGAGCCT  550

seq1  TGGGGATTACCCCGGGCAGATATTACACAGGGTACCTGTGTCTGTGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATTACCCCGGGCAGATATTACACAGGGTACCTGTGTCTGTGTTAG  600

seq1  CATCCTCTCTTAAGCTCTTAGCCCCATATGGTGCTTTGGCAAGCATTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTCTTAAGCTCTTAGCCCCATATGGTGCTTTGGCAAGCATTCCC  650

seq1  TGGTGACTGTCAGCTCTGATATCTGTTGTTCCTGATCTGTCTTAGCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTGTCAGCTCTGATATCTGTTGTTCCTGATCTGTCTTAGCTGTC  700

seq1  AACACT-GGGGGGCAGGTCTGACCTCCCCTGTCAGAAGTCACTTAGCTCT  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGGGGGGCAGGTCTGACCTCCCCTGTCAGAAGTCACTTAGCTCT  750

seq1  CATGAACAGACAATTGAGTACATATTTGTACCCCTGTTCTCCTGTTGACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACAGACAATTGAGTACATATTTGTACCCCTGTTCTCCTGTTGACT  800

seq1  GGCTGTGTGACTTTGGACAAGTCTCTGCACCTCTCTGAACTACCCTTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGTGACTTTGGACAAGTCTCTGCACCTCTCTGAACTACCCTTTTA  850

seq1  CCATCTGTCTCAAGGGGTTGGTGCCATCTGGATATAGATTGTGTCTCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTCTCAAGGGGTTGGTGCCATCTGGATATAGATTGTGTCTCTTC  900

seq1  GGAAATTTTTCTTGGCTTGGGAAGAAGTTCCGGGTTGCGGGGAGTGGAGT  949
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GG-AATTTTTCTTGGCTTGGGAAGAAGTTCCGGGTTGCCGGGAGTGGAGT  949

seq1  GTCTTGGACTCCTTTGGAA-TTCCTGTCTCTACCCTCATAGAAGGAGCTC  998
      |||||||||| |||||||| ||| ||||||||| ||||||||||||||||
seq2  GTCTTGGACT-CTTTGGAATTTCTTGTCTCTACTCTCATAGAAGGAGCTC  998

seq1  AAGAGCTGGGTTCAGGGGAACCTCACTGCCTGTGGCCGATCCCTTTTCCT  1048
       |||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  -AGAGCTGGGTTCAGGGGAACCTCACTGCCTGT-GCCGATCCC-TTTCCT  1045

seq1  CTTCGATGAG-ATGGACAAGCTGCCTCCTGGCCTGATGGAAGTCCTGCAG  1097
      |||||||||| |||||  |||||||| |||| |||||||| |||||||||
seq2  CTTCGATGAGAATGGAACAGCTGCCTTCTGG-CTGATGGAGGTCCTGCAG  1094

seq1  CCCTTCCTGGGCCCTTCTTGGGTTGTGTATGGGACCAACTATCGCAAAGC  1147
      ||||||||||| |||||||||| ||||||| |||||||||||||| ||||
seq2  CCCTTCCTGGG-CCTTCTTGGGCTGTGTAT-GGACCAACTATCGC-AAGC  1141

seq1  CATCTTCA--TCTTTATCAGGT-CTGG--CCTCTATT-GCAAGC-AAGTG  1190
      ||||||||  |||||||||||| ||||  | |||||| |||||| |||||
seq2  CATCTTCAACTCTTTATCAGGTCCTGGTCCTTCTATTGGCAAGCGAAGTG  1191

seq1: chr2_32731978_32732868
seq2: B6Ng01-178I13.g_77_968 (reverse)

seq1  ACGCCTCCGATCTCATGGGGAGCGGTACTCGAGAGTCAAGGCCCAGGTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTCCGATCTCATGGGGAGCGGTACTCGAGAGTCAAGGCCCAGGTCG  50

seq1  GGACGAGAGCCGGCCAGACCCTTACTCTTCCTCCGAACTTGTTCTCTCTC  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGACGAGAGCGGGCCAGACCCTTACTCTTCCTCCGAACTTGTTCTCTCTC  100

seq1  GGTCTGGACGGCCCTTCCAGGCCCTTCTGTATGCTCCTTTCACCCTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGACGGCCCTTCCAGGCCCTTCTGTATGCTCCTTTCACCCTTTGA  150

seq1  GGAGCCTGGGATCCCATTTCTCTACTGGATCCCACTGCTCCCCTTGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGGGATCCCATTTCTCTACTGGATCCCACTGCTCCCCTTGGAGC  200

seq1  CCAGCCTGGCCAGAACCATGCACTTACAGGCGTGGCGGAGGGGTCGCGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGCCAGAACCATGCACTTACAGGCGTGGCGGAGGGGTCGCGCC  250

seq1  CCCCATCTTTCCCAACAACGTTCCAAGCCTAACCTCTACTCTGGACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTTTCCCAACAACGTTCCAAGCCTAACCTCTACTCTGGACTCTG  300

seq1  CCCCACAGAGTCAGACCTTCCAGACTCCCCCCTCAGCTGCCTTGTTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGAGTCAGACCTTCCAGACTCCCCCCTCAGCTGCCTTGTTCCTC  350

seq1  CTCGCCCTGGCCTCAGTCCGGGTACACGTGGCTGAAGCTTACAGGGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCCTGGCCTCAGTCCGGGTACACGTGGCTGAAGCTTACAGGGGGAT  400

seq1  GGGCCCTTAGAGAGCCGGGGACCGAATGTGGAGAGTGGGGCTAAGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTTAGAGAGCCGGGGACCGAATGTGGAGAGTGGGGCTAAGGAGAG  450

seq1  ATGGGGTGCCCTTGAAGGGGCGGGTCCCTGTCTTTGGGCTTTACCTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTGCCCTTGAAGGGGCGGGTCCCTGTCTTTGGGCTTTACCTCAGC  500

seq1  AGAGTGCTGGCACTACAGCCTAGGGGGTCTGTTTATGGCCAGAGCTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCTGGCACTACAGCCTAGGGGGTCTGTTTATGGCCAGAGCTGGTT  550

seq1  CTCTCAGAGCCAGAGTTCAGTCTCTCAGTACCTCTCAGTACCTTCCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAGCCAGAGTTCAGTCTCTCAGTACCTCTCAGTACCTTCCTTCT  600

seq1  GCCAGCCTTGCTCTCAGCCTGTCACTGCGCGGTGGACACTTCTCTAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTTGCTCTCAGCCTGTCACTGCGCGGTGGACACTTCTCTAGAGG  650

seq1  GAGTTGCTCCCAAGTCTGTGGAGTGCAGGATCCTGGGCTCATTGTAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCTCCCAAGTCTGTGGAGTGCAGGATCCTGGGCTCATTGTAGGGA  700

seq1  GTGGGAGATGGGGTGAGAATCTCAGGCTATCCCAAAACAAAGCTTGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGATGGGGTGAGAATCTCAGGCTATCCCAAAACAAAGCTTGGCTG  750

seq1  ACCACAGGCAAGTCAGGCCTGGCGGTCCTGAATGTAATTTCAGCTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGGCAAGTCAGGCCTGGCGGTCCTGAATGTAATTTCAGCTTCTCT  800

seq1  CCCAAGTGTGTGATCCTGAGCCAGTCTCTTTTGTTTTGGTTTTCCCAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGTGTGATCCTGAGCCAGTCTCTTTTGTTTTGGTTTTCCCAGCC  850

seq1  AGGGTCTCACCATGTAGTTGTGGCTGTAGAC-CTGGCTGGCT  891
      |||||||||||||||||||||||||||||||  |||||||||
seq2  AGGGTCTCACCATGTAGTTGTGGCTGTAGACAATGGCTGGCT  892