BAC Information

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BAC

Clone NameB6Ng01-178I20
Chromosome2 (Build37)
Map Location 118,854,706 - 118,993,874
singlet/doubletdoublet
Overlap geneCcdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379
Downstream geneDnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178I20.bB6Ng01-178I20.g
ACCGA005509GA005510
length4721,049
definitionB6Ng01-178I20.b B6Ng01-178I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,854,706 - 118,855,183)(118,992,836 - 118,993,874)
sequence
cagccaagtccagccagcgcgagggcccaaagtagatagtagtagaaggt
cagatatgtcacgaagtccttagaatctccgtggaagtactctacacacc
caaaccccaagtctgcactcactcgggggtggggtggggtgaggcatgtc
cctgaccccgggaaccttcagaacggtagaggaaaacgtgtgtccagatc
ccaggcctcagtcaccccggcctaaacaaatcactggtcttgacgatccg
gcccctgataccctcagttgtgtttcggggtcaggccatagtaggagatg
ctaaacacgggacaccgcggcccctcacctaccgcaattacctgcccagc
agtttccaaacgcccggctcaggtttgtcgctggcagtcaggaagaatcg
gggaggggcggagcctctgagtgacggagctgagaagccctccaattgat
gtctgattttctgtcgttctat
gaattctctctgcatcagaacgagccctgcctggagggggctacaggtga
gccgctgtgtgcgcagcttagcttggcctttggcgtgcgggccctggctg
cagcgcttgtgaagcgggtcgtgggtgtccccgcggaactccctgcccat
ccagtcgcctgaccctgcctggtgtccgcgccgcgggggcgtggtaggcc
ggttgcgggaccatcaggaaagtcccttagagtggctgtcgctgtcaccc
actccaggtactcaccatacggatctgagtgctgatgagcagatagggca
tggtgcgtggctggggctgcccgcgaccacagtcccgttactccctgctc
tgtccgcgggcggcgcttggcggccgtgcggacactgcacgagccaatca
ggagcgcgcgccgcggtcccgccgccccagagacctggaagcgggcgtgt
ccccgcggacttcactaggagttgtggccatggcgtacagggtgcctgtc
gcccctttgccctcttcctgcaatacctccatgctcaggctccaaagtcc
ggcggatgccagtcggtttccgcctgtccctaaaacgtagcagagcgaaa
actgcgctgaggactaaagggaagcggggactgcgtgtcctcaccaggac
gcgtgccttgtgaacttaagtgcacgaggcgaggcgagacgcgagtgtca
ggtcctgggcagtcctgcgtcctggggtctgtcctggggtctgtcatttt
caagtgtggctgcgggtctttgcatgcctatctatggccctgcaaattaa
gtctgtgcatcatctacactcttggctgggtgccagtcctctggctgtaa
aggcgcggaaacctgttcctcctgcagggagccttgggagcacgcgcaga
tcacagggttaccacctgaggcatagaaacgtcgatcccttaagcctgat
gctcaagagagggcggcgagttccacaactagcctggtccacgccctcat
tctagaagtagaccaaggtcaacattcttcaactcgactcaattctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_118854706_118855183
seq2: B6Ng01-178I20.b_48_525

seq1  GAATTCCAGCCAAGTCCAGCCAGCGCGAGGGCCCAAAGTAGATAGTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCAAGTCCAGCCAGCGCGAGGGCCCAAAGTAGATAGTAGTA  50

seq1  GAAGGTCAGATATGTCACGAAGTCCTTAGAATCTCCGTGGAAGTACTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCAGATATGTCACGAAGTCCTTAGAATCTCCGTGGAAGTACTCTA  100

seq1  CACACCCAAACCCCAAGTCTGCACTCACTCGGGGGTGGGGTGGGGTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAAACCCCAAGTCTGCACTCACTCGGGGGTGGGGTGGGGTGAGG  150

seq1  CATGTCCCTGACCCCGGGAACCTTCAGAACGGTAGAGGAAAACGTGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCCTGACCCCGGGAACCTTCAGAACGGTAGAGGAAAACGTGTGTC  200

seq1  CAGATCCCAGGCCTCAGTCACCCCGGCCTAAACAAATCACTGGTCTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCAGGCCTCAGTCACCCCGGCCTAAACAAATCACTGGTCTTGAC  250

seq1  GATCCGGCCCCTGATACCCTCAGTTGTGTTTCGGGGTCAGGCCATAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCGGCCCCTGATACCCTCAGTTGTGTTTCGGGGTCAGGCCATAGTAG  300

seq1  GAGATGCTAAACACGGGACACCGCGGCCCCTCACCTACCGCAATTACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTAAACACGGGACACCGCGGCCCCTCACCTACCGCAATTACCTG  350

seq1  CCCAGCAGTTTCCAAACGCCCGGCTCAGGTTTGTCGCTGGCAGTCAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGTTTCCAAACGCCCGGCTCAGGTTTGTCGCTGGCAGTCAGGAA  400

seq1  GAATCGGGGAGGGGCGGAGTCTCTGAGTGACGGAGCTGAGAAGCCCTCCA  450
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATCGGGGAGGGGCGGAGCCTCTGAGTGACGGAGCTGAGAAGCCCTCCA  450

seq1  ATTGATGTCTGATTTTCTGTCGTTCTAT  478
      ||||||||||||||||||||||||||||
seq2  ATTGATGTCTGATTTTCTGTCGTTCTAT  478

seq1: chr2_118992836_118993874
seq2: B6Ng01-178I20.g_67_1115 (reverse)

seq1  ATCAGAA-TGAGTCG-GTTGAAGAATGTTGACCT--GTCTACTTCTAG-A  45
      ||||||| ||||||| ||||||||||||||||||  |||||||||||| |
seq2  ATCAGAATTGAGTCGAGTTGAAGAATGTTGACCTTGGTCTACTTCTAGAA  50

seq1  TGAGGGCGTGGACCA-GCTAGTTGT-GAACTCGCCGCCCTCTCTTGGGCA  93
      ||||||||||||||| ||||||||| |||||||||||||||||||| |||
seq2  TGAGGGCGTGGACCAGGCTAGTTGTGGAACTCGCCGCCCTCTCTTGAGCA  100

seq1  TCAGGCTT-AGGGATCGACGTTTCTATGCCTCAGGT-GTTACCCTGTGAT  141
      |||||||| ||||||||||||||||||||||||||| || ||||||||||
seq2  TCAGGCTTAAGGGATCGACGTTTCTATGCCTCAGGTGGTAACCCTGTGAT  150

seq1  CTGCGCGTGCTCCCAAGGCTCCCTGCAGGAGGAACAGG-TTCCGCGCCTT  190
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGCGCGTGCTCCCAAGGCTCCCTGCAGGAGGAACAGGTTTCCGCGCCTT  200

seq1  TACAGCCAGAGGACTGGCACCCAGCCAAGAGTGTAGATGATGCACAGACT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAGAGGACTGGCACCCAGCCAAGAGTGTAGATGATGCACAGACT  250

seq1  TAATTTGCAGGGCCATAGATAGGCATGCAAAGACCCGCAGCCACACTTGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCAGGGCCATAGATAGGCATGCAAAGACCCGCAGCCACACTTGA  300

seq1  AAATGACAGACCCCAGGACAGACCCCAGGACGCAGGACTGCCCAGGACCT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAGACCCCAGGACAGACCCCAGGACGCAGGACTGCCCAGGACCT  350

seq1  GACACTCGCGTCTCGCCTCGCCTCGTGCACTTAAGTTCACAAGGCACGCG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCGCGTCTCGCCTCGCCTCGTGCACTTAAGTTCACAAGGCACGCG  400

seq1  TCCTGGTGAGGACACGCAGTCCCCGCTTCCCTTTAGTCCTCAGCGCAGTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGAGGACACGCAGTCCCCGCTTCCCTTTAGTCCTCAGCGCAGTT  450

seq1  TTCGCTCTGCTACGTTTTAGGGACAGGCGGAAACCGACTGGCATCCGCCG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTCTGCTACGTTTTAGGGACAGGCGGAAACCGACTGGCATCCGCCG  500

seq1  GACTTTGGAGCCTGAGCATGGAGGTATTGCAGGAAGAGGGCAAAGGGGCG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGAGCCTGAGCATGGAGGTATTGCAGGAAGAGGGCAAAGGGGCG  550

seq1  ACAGGCACCCTGTACGCCATGGCCACAACTCCTAGTGAAGTCCGCGGGGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCACCCTGTACGCCATGGCCACAACTCCTAGTGAAGTCCGCGGGGA  600

seq1  CACGCCCGCTTCCAGGTCTCTGGGGCGGCGGGACCGCGGCGCGCGCTCCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCCGCTTCCAGGTCTCTGGGGCGGCGGGACCGCGGCGCGCGCTCCT  650

seq1  GATTGGCTCGTGCAGTGTCCGCACGGCCGCCAAGCGCCGCCCGCGGACAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCTCGTGCAGTGTCCGCACGGCCGCCAAGCGCCGCCCGCGGACAG  700

seq1  AGCAGGGAGTAACGGGACTGTGGTCGCGGGCAGCCCCAGCCACGCACCAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAGTAACGGGACTGTGGTCGCGGGCAGCCCCAGCCACGCACCAT  750

seq1  GCCCTATCTGCTCATCAGCACTCAGATCCGTATGGTGAGTACCTGGAGTG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATCTGCTCATCAGCACTCAGATCCGTATGGTGAGTACCTGGAGTG  800

seq1  GGTGACAGCGACAGCCACTCTAAGGGACTTTCCTGATGGTCCCGCAACCG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGCGACAGCCACTCTAAGGGACTTTCCTGATGGTCCCGCAACCG  850

seq1  GCCTACCACGCCCCCGCGGCGCGGACACCAGGCAGGGTCAGGCGACTGGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCACGCCCCCGCGGCGCGGACACCAGGCAGGGTCAGGCGACTGGA  900

seq1  TGGGCAGGGAGTTCCGCGGGGACACCCACGACCCGCTTCACAAGCGCTGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGGAGTTCCGCGGGGACACCCACGACCCGCTTCACAAGCGCTGC  950

seq1  AGCCAGGGCCCGCACGCCAAAGGCCAAGCTAAGCTGCGCACACAGCGGCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCCCGCACGCCAAAGGCCAAGCTAAGCTGCGCACACAGCGGCT  1000

seq1  CACCTGTAGCCCCCTCCAGGCAGGGCTCGTTCTGATGCAGAGAGAATTC  1039
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTAGCCCCCTCCAGGCAGGGCTCGTTCTGATGCAGAGAGAATTC  1049