BAC Information

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BAC

Clone NameB6Ng01-178M23
Chromosome2 (Build37)
Map Location 110,313,091 - 110,314,222
singlet/doubletsinglet
Overlap genenone
Upstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799
Downstream geneSlc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178M23.bB6Ng01-178M23.g
ACCGA005694GA005695
length1,1921,125
definitionB6Ng01-178M23.b B6Ng01-178M23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ggagatccatctgtatctgcttcacaaatactgagattaaatgcctgagc
tattataacgagcttacaatttattactagttgttagtctggaaataaac
aatctatgttgggtagattcatctcaaggtaattacacatcttaatctga
tagagggctaagaaatatatacacaaacagttagactacagaaaaacaaa
taaccctattaaaaaatagggtacagggctaaaaaagtattctcaactga
ggaatacctaatggccaagaagtacctgaaaaaaatgttcaacatcctta
gtcatcagggaaatgaaaatcaaaacaaccttgagattccaccttacact
agtcagaatagctaagataaaaaactcagatgacggcagatgcttttgag
gatgtggagaaagaggaacacactcctccattgctggtggtactacaagc
tggtacaaccactcaggaaatcagtttggcagttcctcagaaaattagac
atagtattacctgaggaaccagcaatatcattcctgggcatatacccaga
agattatctaacaggcagtaaggacatatgctccactatgttcatagcag
ccttatttataatagctagaagctggaaagaacccaggtgtccctcaaca
gaggaatggatacagaaaatatggtacatatacacaatggagtactactc
agctattaaaaacaatgaatttatgaaatttttagacaaatggatggacc
tggagggcatcatcctgagtgaggtaacccaataacaaaagaacacacat
gatatgcattcactgataaatggatattatcccagaagcttggaataccc
aagatacaatttgcaaaacatatgaaacccaagaagaaagaagatcaaaa
tatggatatttcgatccttctcagaagggcgaataaaatatccatggaag
agttacagagacaaagttcagagctgagacgaaggatgaccatccagaga
ctgccccacctgggaattaatcccataaacaaccaccaaaccagacacaa
ttgtgaatgccaataagagctgatgacaggagccttatattaagcaatct
tctggaaagctatgcttagtgcctcacaattacgatggatgcctcacaga
acatccatgtgaacatggtgtcaccacagaggtgtcttctca
gaattctgtattttgcggatcaaaaggaatgtttggatccttcaatccca
gaacattagctgaattattggacaagatgatcttgatatctcaaaacatt
gctgagttttgtcaaatcattgtctcacatgagctcaatataatatttag
tctgcattgatttttaattgtctgaattcctgctactattgaatcatgct
atcttttgggggatgtatgacttgattttgaaccatataaatgacttcct
agactcgaatttcataatattcaaatgagttaagtattaatgacaggatt
catgttcatagattttaagttatagatttaaaaaaaataagtattagagt
tctagctattctttcctgtgctgtcttctctgacgtagagtaagcactaa
aatacttaacaattcattttgtgaggcagaggtcaacagaaaagagaaaa
gagccacaaagaagtgtccagtcagctagggtattgctctacccaaaact
tataagcattaaaataagactattgatgctcagagaattcacaatatact
aatgacataatcagttttacttagctggctaagaaataatataagatccc
attcacttaactcactgagatagagatgtagagagtgaaagggctaagtt
tgggccaaatttgcatttgagactcaccaatttacacaacacataagagc
cagcaaaagcttcactaaattttattaaccaccaacatgtacacaatatt
ctggtatctataaagtcacttgattattaagggccaacactgcttttttc
atgaggtgagggcagattaagtgaggaagcctttatagtacctataataa
tccctgctagtagaatcttacaacaatggattgagagtccggaaaaaaca
ctctgcctagcttacctgttcatatatgacaaagggcatgctgcagaaca
atattttttttctataaatagtgctaaactatttgttttaatatgaaaaa
tagagtctgtgtcacaaagttagcaaatatcaggtgcactaaattaaaga
ataatatgaaaagcagaaatatacttttagaagatcaatgtagttagata
tttcagctcctagctagaaattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_110313091_110314222
seq2: B6Ng01-178M23.g_66_1190

seq1  GAATTCTGTATTTTGCGGATCAAAAGGAATGTTTGGATCCTTCAATCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATTTTGCGGATCAAAAGGAATGTTTGGATCCTTCAATCCCA  50

seq1  GAACATTAGCTGAATTATTGGACAAGATGATCTTGATATCTCAAAACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTAGCTGAATTATTGGACAAGATGATCTTGATATCTCAAAACATT  100

seq1  GCTGAGTTTTGTCAAATCATTGTCTCACATGAGCTCAATATAATATTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTTTTGTCAAATCATTGTCTCACATGAGCTCAATATAATATTTAG  150

seq1  TCTGCATTGATTTTTAATTGTCTGAATTCCTGCTACTATTGAATCATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTGATTTTTAATTGTCTGAATTCCTGCTACTATTGAATCATGCT  200

seq1  ATCTTTTGGGGGATGTATGACTTGATTTTGAACCATATAAATGACTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGGGGGATGTATGACTTGATTTTGAACCATATAAATGACTTCCT  250

seq1  AGACTCGAATTTCATAATATTCAAATGAGTTAAGTATTAATGACAGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCGAATTTCATAATATTCAAATGAGTTAAGTATTAATGACAGGATT  300

seq1  CATGTTCATAGATTTTAAGTTATAGATTTAAAAAAAATAAGTATTAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCATAGATTTTAAGTTATAGATTTAAAAAAAATAAGTATTAGAGT  350

seq1  TCTAGCTATTCTTTCCTGTGCTGTCTTCTCTGACGTAGAGTAAGCACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTATTCTTTCCTGTGCTGTCTTCTCTGACGTAGAGTAAGCACTAA  400

seq1  AATACTTAACAATTCATTTTGTGAGGCAGAGGTCAACAGAAAAGAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTAACAATTCATTTTGTGAGGCAGAGGTCAACAGAAAAGAGAAAA  450

seq1  GAGCCACAAAGAAGTGTCCAGTCAGCTAGGGTATTGCTCTACCCAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACAAAGAAGTGTCCAGTCAGCTAGGGTATTGCTCTACCCAAAACT  500

seq1  TATAAGCATTAAAATAAGACTATTGATGCTCAGAGAATTCACAATATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCATTAAAATAAGACTATTGATGCTCAGAGAATTCACAATATACT  550

seq1  AATGACATAATCAGTTTTACTTAGCTGGCTAAGAAATAATATAAGATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATAATCAGTTTTACTTAGCTGGCTAAGAAATAATATAAGATCCC  600

seq1  ATTCACTTAACTCACTGAGATAGAGATGTAGAGAGTGAAAGGGCTAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTAACTCACTGAGATAGAGATGTAGAGAGTGAAAGGGCTAAGTT  650

seq1  TGGGCCAAATTTGCATTTGAGACTCACCAATTTACACAACACATAAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAAATTTGCATTTGAGACTCACCAATTTACACAACACATAAGAGC  700

seq1  CAGCAAAAGCTTCACTAAATTTTATTAACCACCAACATGTACACAATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAAGCTTCACTAAATTTTATTAACCACCAACATGTACACAATATT  750

seq1  CTGGTATCTATAAAGTCACTTGATTATTAAGGGCCAACACTGCTTTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATCTATAAAGTCACTTGATTATTAAGGGCCAACACTGCTTTTTTC  800

seq1  ATGAGGTGAGGGCAGATTAAGTGAGGAAGCCTTTATAGTACCTATAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGAGGGCAGATTAAGTGAGGAAGCCTTTATAGTACCTATAATAA  850

seq1  TCCCTGCTAGTAGAATCTTACAACAATGGATTGAGAGTCCGGAAAAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTAGTAGAATCTTACAACAATGGATTGAGAGTCCGGAAAAAACA  900

seq1  CTCTGCCTAGCTTACCTGTTCATATATGACAAAGGGCATGCTGCAGAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTAGCTTACCTGTTCATATATGACAAAGGGCATGCTGCAGAACA  950

seq1  ATAATTTTTTTCTATAAATAGTGCTAAAACTATTTGTTTTAATATGAAAA  1000
      ||| ||||||||||||||||||||| |||||||||||||||||||| |||
seq2  ATATTTTTTTTCTATAAATAGTGCT-AAACTATTTGTTTTAATATG-AAA  998

seq1  AATAGAGTCCTGTGTCACAAAGTTAGCAAATATCAGGTGCACTTAAATTA  1050
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  AATAGAGT-CTGTGTCACAAAGTTAGCAAATATCAGGTGCAC-TAAATTA  1046

seq1  AAGATAAATATGAAAAGCGAGAATATAAACTTTTAGAAGA-CAATGTAG-  1098
      ||||  |||||||||||| |||| ||| |||||||||||| |||||||| 
seq2  AAGAATAATATGAAAAGC-AGAA-ATATACTTTTAGAAGATCAATGTAGT  1094

seq1  TAGATATTTAAGGTTTCTAGCTAGAAAAATTATT  1132
      ||||||||| | | | ||||||||  ||||||||
seq2  TAGATATTTCA-GCTCCTAGCTAG--AAATTATT  1125