BAC Information

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BAC

Clone NameB6Ng01-179C17
Chromosome2 (Build37)
Map Location 172,835,822 - 172,975,236
singlet/doubletdoublet
Overlap geneRae1, Rbm38, Ctcfl, EG619800
Upstream geneCbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11
Downstream genePck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179C17.bB6Ng01-179C17.g
ACCGA005964GA005965
length837856
definitionB6Ng01-179C17.b B6Ng01-179C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,835,822 - 172,836,655)(172,974,386 - 172,975,236)
sequence
gaattctccagagtaccttgctctgagtggtcatcatttctggccaggct
ccctttgcccttcagactagaggtcacgcttgattcacctctctcactta
ccgccccccaggcttccccattcctttctctgtctacctgccactcccag
tcccaagtcttcttggagttagaaaaaaacttcctgccattcgaccttgc
agtgctatcttgcatatgacaccagaaaacataggcaagaaataaacact
aacccagcaggaccacaccagaccagtcctcacaggaaggagcagccagc
agtaaaaacctacaggaaacaggcctgtaggtggtaacatgtcacctttt
aaagggataaagaacttttagcaaaactaatgacccagttaaaatcccca
aaggtaacaacctgtccagctaccagtatgtgaaggcagtgtttcttttt
atcccaggaaagctcggagacagcatctcacacattgttttcagaaactc
agaacatagggtgggcgggctctaaagaatggctccatggttgagagcac
gtgatgcatggtaacaaagacctaagttcagatccctgacgtggtgacaa
ggtgggcctggttcagtgcactcctgcaacctcggtgcgtgggagttgga
gacaggtgtatccctgggtgactgccttgagaaaatacacacaaagtgac
aggggacacttgaccccctcctctggttcctatgtatttgctcacatgcc
tgcacattcataccacaccattcacatgtgtgaacacacaagagatataa
ataagaaaaataagaaagatagcatgtgttgggcgag
gaattcctgcttcaagatctggaataagatgtgtgtctcccaacgctcag
gaggcagaggcaggcagagcctctgtgagttagggccagttggttataca
aagccagtttcaggacagccagggctatacaaagaaactgtgtctcagaa
aagcaaaacaaagaaaaaccaaaaagagtttgtggtttgtgtcttcctac
ctcaaagatccacactagaagtggattcacccacttcaaaccaagcaaaa
acatctctcccgggtgtgccctccctttctggattgcagtccattcctag
tgtagtaagggtgacaaccaagaacagccatcaaagccgtcttcttccat
gattccttcctgaacctactctacatgttacctcaacgatagtctcatcg
gttgtatccttgagtgacaagataaagaactatttaaagtcccatttgtt
aactgcactctctccagtgccctctgggtcccagccctgtgaagaacaaa
cttcctaaaggcgggcttcccatggtcctctccgatcgtcattgtcttct
ccaatttagagatcaggaaattgaggctcgagaaaggaatcacatgcgtt
cactcagcaaacactggctggatggctactggtattcttgagcagaatag
aagttccacagactttgagccctagggctttttatcagctctgtatgact
ctaggacttcactgtcagacacacagccgacaccacatgcatactcatcc
ccaggacgacgcaagaagctatgcgcatggctggctcttggaagaatata
tttctctgtttctgggccttttgtgaccacccttcccagtagacgaccct
gaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172835822_172836655
seq2: B6Ng01-179C17.b_46_882

seq1  GAATTCTCCAGAGTACCTTGCTCTGAGTGGTCATCATCTCTGGCCAGGCT  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAATTCTCCAGAGTACCTTGCTCTGAGTGGTCATCATTTCTGGCCAGGCT  50

seq1  CCCTTTGCCCTTCAGACTAGAGGTCACGCTTGAGTCACCTCTCTCACTTA  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCTTTGCCCTTCAGACTAGAGGTCACGCTTGATTCACCTCTCTCACTTA  100

seq1  CCGCCCCCCAGGCTTCCCCATTCCTTTCTCTGTCTACCTGCCACTCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCCCAGGCTTCCCCATTCCTTTCTCTGTCTACCTGCCACTCCCAG  150

seq1  TCCCAAGTCTTCTTGGAGTTAGAAAAAAACTTCCTGCCATTCGACCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTCTTCTTGGAGTTAGAAAAAAACTTCCTGCCATTCGACCTTGC  200

seq1  AGTGCTATCTTGCATATGACACCAGAAAACATAGGCAAGAAATAAACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTATCTTGCATATGACACCAGAAAACATAGGCAAGAAATAAACACT  250

seq1  AACCCAGCAGGACCACACCAGACCAGTCCTCACAGGAAGGAGCAGCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCAGGACCACACCAGACCAGTCCTCACAGGAAGGAGCAGCCAGC  300

seq1  AGTAAAAACCTACAGGAAACAGGCCTGTAGGTGGTAACATGTCACCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAACCTACAGGAAACAGGCCTGTAGGTGGTAACATGTCACCTTTT  350

seq1  AAAGGGATAAAGAACTTTTAGCAAAACTAATGACCCAGTTAAAATCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATAAAGAACTTTTAGCAAAACTAATGACCCAGTTAAAATCCCCA  400

seq1  AAGGTAACAACCTGGCCAGCTACCAGTATGTGAAGGCAGTGTTTCTTTTT  450
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGGTAACAACCTGTCCAGCTACCAGTATGTGAAGGCAGTGTTTCTTTTT  450

seq1  ATCCCAGGAAAGCTCGGAGACAGCATCTCACACATTGTTTTCAGAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGAAAGCTCGGAGACAGCATCTCACACATTGTTTTCAGAAACTC  500

seq1  AGAACATAGGGTGGGCGGGCTCTAAAGAATGGCTCCATGGTTGAGAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATAGGGTGGGCGGGCTCTAAAGAATGGCTCCATGGTTGAGAGCAC  550

seq1  GTGATGCATGGTAACAAAGACCTAAGTTCAGATCCCTGACGTGGTGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCATGGTAACAAAGACCTAAGTTCAGATCCCTGACGTGGTGACAA  600

seq1  GGTGGGCCTGGTTCAGTGCACTCCTGCAACCTCGGTGCGTGGGAGTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCCTGGTTCAGTGCACTCCTGCAACCTCGGTGCGTGGGAGTTGGA  650

seq1  GACAGGTGTATCCCTGGGTGACTGCCTTGAGAAAATACACACAAAGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTGTATCCCTGGGTGACTGCCTTGAGAAAATACACACAAAGTGAC  700

seq1  AGGGGACACTTGA-CCCCTCCTCTGGTTCCTATGTATTTGCTCACATGCC  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGGGACACTTGACCCCCTCCTCTGGTTCCTATGTATTTGCTCACATGCC  750

seq1  TGCACATTCATACCACACCATTCACATGTGTGAACACACAAGAGATACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCACATTCATACCACACCATTCACATGTGTGAACACACAAGAGATATAA  800

seq1  ATAAGAAAAA-AAGAAAGATAGCAGGTGTT-GGCGAG  834
      |||||||||| ||||||||||||| ||||| ||||||
seq2  ATAAGAAAAATAAGAAAGATAGCATGTGTTGGGCGAG  837

seq1: chr2_172974386_172975236
seq2: B6Ng01-179C17.g_69_923 (reverse)

seq1  TTTTCAGGGTCGTCTACTGGGAAGGGTGGTCAC-AAAGGCCCAGGAACAG  49
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  TTTTCAGGGTCGTCTACTGGGAAGGGTGGTCACAAAAGGCCCAGAAACAG  50

seq1  AG-AATATATTCTTCCAAGAGCCAGCCATGCGCATAGCTTCTTGCGTCGT  98
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATATTCTTCCAAGAGCCAGCCATGCGCATAGCTTCTTGCGTCGT  100

seq1  CCTGGGGATGAGTATGCATGTGGTGTCGGCTGTGTGTCTGACAGTGAAGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGATGAGTATGCATGTGGTGTCGGCTGTGTGTCTGACAGTGAAGT  150

seq1  CCTAGAGTCATACAGAGCTGAT-AAAAGCCCTA-GGCTCAAAGTCTGTGG  196
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  CCTAGAGTCATACAGAGCTGATAAAAAGCCCTAGGGCTCAAAGTCTGTGG  200

seq1  AACTTCTATTCTGCTCAAGAATACCAGTAGCCATCCAGCCAGTGTTTGCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTATTCTGCTCAAGAATACCAGTAGCCATCCAGCCAGTGTTTGCT  250

seq1  GAGTGAACGCATGTGATTCCTTTCTCGAGCCTCAATTTCCTGATCTCTAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAACGCATGTGATTCCTTTCTCGAGCCTCAATTTCCTGATCTCTAA  300

seq1  ATTGGAGAAGACAATGACGATCGGAGAGGACCATGGGAAGCCCGCCTTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGAAGACAATGACGATCGGAGAGGACCATGGGAAGCCCGCCTTTA  350

seq1  GGAAGTTTGTTCTTCACAGGGCTGGGACCCAGAGGGCACTGGAGAGAGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTGTTCTTCACAGGGCTGGGACCCAGAGGGCACTGGAGAGAGTG  400

seq1  CAGTTAACAAATGGGACTTTAAATAGTTCTTTATCTTGTCACTCAAGGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAACAAATGGGACTTTAAATAGTTCTTTATCTTGTCACTCAAGGAT  450

seq1  ACAACCGATGAGACTATCGTTGAGGTAACATGTAGAGTAGGTTCAGGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCGATGAGACTATCGTTGAGGTAACATGTAGAGTAGGTTCAGGAAG  500

seq1  GAATCATGGAAGAAGACGGCTTTGATGGCTGTTCTTGGTTGTCACCCTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGGAAGAAGACGGCTTTGATGGCTGTTCTTGGTTGTCACCCTTA  550

seq1  CTACACTAGGAATGGACTGCAATCCAGAAAGGGAGGGCACACCCGGGAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTAGGAATGGACTGCAATCCAGAAAGGGAGGGCACACCCGGGAGA  600

seq1  GATGTTTTTGCTTGGTTTGAAGTGGGTGAATCCACTTCTAGTGTGGATCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTTGCTTGGTTTGAAGTGGGTGAATCCACTTCTAGTGTGGATCT  650

seq1  TTGAGGTAGGAAGACACAAACCACAAACTCTTTTTGGTTTTTCTTTGTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTAGGAAGACACAAACCACAAACTCTTTTTGGTTTTTCTTTGTTT  700

seq1  TGCTTTTCTGAGACACAGTTTCTTTGTATAGCCCTGGCTGTCCTGAAACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTGAGACACAGTTTCTTTGTATAGCCCTGGCTGTCCTGAAACT  750

seq1  GGCTTTGTATAACCAACTGGCCCTAACTCACAGAGGCTCTGCCTGCCTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTATAACCAACTGGCCCTAACTCACAGAGGCTCTGCCTGCCTCT  800

seq1  GCCTCCTGAGCGTTGGGAGACACACATCTTATTCCAGATCTTGAAGCAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGAGCGTTGGGAGACACACATCTTATTCCAGATCTTGAAGCAGG  850

seq1  AATTC  851
      |||||
seq2  AATTC  855