BAC Information

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BAC

Clone NameB6Ng01-179M16
Chromosome2 (Build37)
Map Location 64,952,383 - 65,074,979
singlet/doubletdoublet
Overlap geneCobll1
Upstream geneLOC620544, LOC667291, Grb14
Downstream geneLOC383705, 9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik, Galnt3, LOC620893, Ttc21b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179M16.bB6Ng01-179M16.g
ACCGA006414GA006415
length762895
definitionB6Ng01-179M16.b B6Ng01-179M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,952,383 - 64,953,137)(65,074,087 - 65,074,979)
sequence
gaattctttcgataaagccctagtggcatgccactccaaagctattgtaa
gactacagtagatgatcaatatgtaaatgcagagacactggaagcaaccg
aaactctgatctgcctcctagctccctgcttcaagaattctgattgattg
ctttcatgagatatataataaaattcttccatctccgtgctgcacaccct
aacactcactgacaggtctgttctttcacctgataaaagcagtcatggca
tgaagtctcaggcacaagtatgtggttgtggtacaggagtgtcataaaga
agctggtacagaaatggaaagggaagggaggtttagctcaaagacagaag
acccacagattatcagtctgggggatcttagaaacaagcttgtgtttttt
aatgtgatatttacatttctagggataaggaatttaaaacatatcaaaat
gagatgaactgcaattttataaatgttctctctctctctgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgcgtgcattttatgaag
acaatttaaagggaaaaacacagacatccaagaaagggctttaccacctt
gtcctgtgaaatccacttctttagccttgcagagcaagtagacagaaaat
cccccatttcttcaagatacaatttgaaatcaaagatgctaagaaagtgg
ccattatatgagagtgttgactgttactcggtcaccaggctagatctaaa
aggtcaccaggc

gaattcccgtgtgtgtctgtgtaatacacttacacaacacgcagtctcag
atgctcaggaatcggttcttctaaacaaaataggtgaggccggagagctc
ggtgatgaaatatagagctttctagtgacaagcctagaataccccgggtt
ttatgcttgagaacttgggggctaaacaaatgagttccttgaaagtatgc
atatatttaattgcttgatgactttatttatgtatttatttatttggcag
cgactcctttaggctaggctggtctgcaactgcatttatagttgagggtt
acctcttgtttctgcctcccaaaattgaggttacaggaatacaccactgc
accctaaagaggaaaatattttaaagaacctttgtgcttacctttcaaac
ttcagggaagatatctgggaaaatgctcctgtaaataaactgccataata
cctaatagtattcttttaagaaaaaaaaaaagagcttctagtggcttgcc
ctctcccacttgtctattccaagtgcctgtcatgtctgatgagtattcag
gattagtgtttgctttttctaaaaaaaaaaaaaaaaaaaaaaaattgaga
cctttaaaaaagtttaaattgtgggaaaatgagagtatttaggaggtgca
gggtgcaatcctaatatgatataattgttggttttgaaggtaggttcctt
actatagaactaattatatcatgactcaatagcctaatagctggtgaggc
cctactttagttcttatccgtggatattgttgttcaaaagaagtcctctg
ttgtctgtaattttccaaggttttactctgttgtaacaggttatttgaag
ggcaaatcaatgcagcttcatatttacaagggtggggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_64952383_64953137
seq2: B6Ng01-179M16.b_42_803

seq1  GAATTCTTTCGATAAAGCCCTAGTGGCATGCCACTCCAAAGCTATTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCGATAAAGCCCTAGTGGCATGCCACTCCAAAGCTATTGTAA  50

seq1  GACTACAGTAGATGATCAATATGTAAATGCAGAGACACTGGAAGCAACCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGTAGATGATCAATATGTAAATGCAGAGACACTGGAAGCAACCG  100

seq1  AAACTCTGATCTGCCTCCTAGCTCCCTGCTTCAAGAATTCTGATTGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGATCTGCCTCCTAGCTCCCTGCTTCAAGAATTCTGATTGATTG  150

seq1  CTTTCATGAGATATATAATAAAATTCTTCCATCTCCGTGCTGCACACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGAGATATATAATAAAATTCTTCCATCTCCGTGCTGCACACCCT  200

seq1  AACACTCACTGACAGGTCTGTTCTTTCACCTGATAAAAGCAGTCATGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCACTGACAGGTCTGTTCTTTCACCTGATAAAAGCAGTCATGGCA  250

seq1  TGAAGTCTCAGGCACAAGTATGTGGTTGTGGTACAGGAGTGTCATAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTCAGGCACAAGTATGTGGTTGTGGTACAGGAGTGTCATAAAGA  300

seq1  AGCTGGTACAGAAATGGAAAGGGAAGGGAGGTTTAGCTCAAAGACAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTACAGAAATGGAAAGGGAAGGGAGGTTTAGCTCAAAGACAGAAG  350

seq1  ACCCACAGATTATCAGTCTGGGGGATCTTAGAAACAAGCTTGTGTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGATTATCAGTCTGGGGGATCTTAGAAACAAGCTTGTGTTTTTT  400

seq1  AATGTGATATTTACATTTCTAGGGATAAGGAATTTAAAACATATCAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATATTTACATTTCTAGGGATAAGGAATTTAAAACATATCAAAAT  450

seq1  GAGATGAACTGCAATTTTATAAATGTTCTCTCTCTCTCTGTGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAACTGCAATTTTATAAATGTTCTCTCTCTCTCTGTGTGTGTGTG  500

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCGTGCAATTTATGAAG  550
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCGTGCATTTTATGAAG  550

seq1  ACAATTTAAAGGGAAAAACACAGACATCCAAGAAAGGGCTTTACCACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAAAGGGAAAAACACAGACATCCAAGAAAGGGCTTTACCACCTT  600

seq1  GTCCTGTGAAATCCACTCCTTTAGCC-TGCAGAGCAAGTAGACAGAAA--  647
      ||||||||||||||||| |||||||| |||||||||||||||||||||  
seq2  GTCCTGTGAAATCCACTTCTTTAGCCTTGCAGAGCAAGTAGACAGAAAAT  650

seq1  TCCCCATTTC-TCAAGATACAATTTG-AATCAAAGATGCTAAGAAAGTGG  695
       ||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  CCCCCATTTCTTCAAGATACAATTTGAAATCAAAGATGCTAAGAAAGTGG  700

seq1  CCATTAGAGGAGAGTG-TGACTGTTACTCGGTCACCAGGCTAGACCT-AA  743
      |||||| | ||||||| ||||||||||||||||||||||||||| || ||
seq2  CCATTATATGAGAGTGTTGACTGTTACTCGGTCACCAGGCTAGATCTAAA  750

seq1  AGGTCACCAGGC  755
      ||||||||||||
seq2  AGGTCACCAGGC  762


seq1: chr2_65074087_65074979
seq2: B6Ng01-179M16.g_69_963 (reverse)

seq1  CCCCCA-CCCCCACCCTTGTAAAATATGAAGCTGCATTGATTTGCCCTTC  49
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCCCACCCCCCACCCTTGT-AAATATGAAGCTGCATTGATTTGCCCTTC  49

seq1  AAATAACCTGTTACAACAGAGT-AAACCTTGGAAAATTACAGACAACAGA  98
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATAACCTGTTACAACAGAGTAAAACCTTGGAAAATTACAGACAACAGA  99

seq1  GGACTTCTTTTGAACAACAATATCCACGGATAAGAACTAAAGTA-GGCCT  147
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGACTTCTTTTGAACAACAATATCCACGGATAAGAACTAAAGTAGGGCCT  149

seq1  CACCAGCTATTAGGCTATTGAGTCATGATATAATTAGTTCTATAGTAAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTATTAGGCTATTGAGTCATGATATAATTAGTTCTATAGTAAGG  199

seq1  AACCTACCTTCAAAACCAACAATTATATCATATTAGGATTGCACCCTGCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACCTTCAAAACCAACAATTATATCATATTAGGATTGCACCCTGCA  249

seq1  CCTCCTAAATACTCTCATTTTCCCACAATTTAAACTTTTTTAAAGGTCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAAATACTCTCATTTTCCCACAATTTAAACTTTTTTAAAGGTCTC  299

seq1  AATTTTTTTTTTTTTTTTTTTTTTTTAGAAAAAGCAAACACTAATCCTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTTTTTTTTTTTTTTTTTAGAAAAAGCAAACACTAATCCTGA  349

seq1  ATACTCATCAGACATGACAGGCACTTGGAATAGACAAGTGGGAGAGGGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCATCAGACATGACAGGCACTTGGAATAGACAAGTGGGAGAGGGCA  399

seq1  AGCCACTAGAAGCTCTTTTTTTTTTTCTTAAAAGAATACTATTAGGTATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTAGAAGCTCTTTTTTTTTTTCTTAAAAGAATACTATTAGGTATT  449

seq1  ATGGCAGTTTATTTACAGGAGCATTTTCCCAGATATCTTCCCTGAAGTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGTTTATTTACAGGAGCATTTTCCCAGATATCTTCCCTGAAGTTT  499

seq1  GAAAGGTAAGCACAAAGGTTCTTTAAAATATTTTCCTCTTTAGGGTGCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTAAGCACAAAGGTTCTTTAAAATATTTTCCTCTTTAGGGTGCAG  549

seq1  TGGTGTATTCCTGTAACCTCAATTTTGGGAGGCAGAAACAAGAGGTAACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTATTCCTGTAACCTCAATTTTGGGAGGCAGAAACAAGAGGTAACC  599

seq1  CTCAACTATAAATGCAGTTGCAGACCAGCCTAGCCTAAAGGAGTCGCTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTATAAATGCAGTTGCAGACCAGCCTAGCCTAAAGGAGTCGCTGC  649

seq1  CAAATAAATAAATAAATAAATAAAGTCATCAAGCAATTAAATATATGCAT  697
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAAATAAATAAATACATAAATAAAGTCATCAAGCAATTAAATATATGCAT  699

seq1  ACTTTCAAGGAACTCATTTGTTTAGCCCCCAAGTTCTCAAGCATAAAACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAAGGAACTCATTTGTTTAGCCCCCAAGTTCTCAAGCATAAAACC  749

seq1  CGGGGTATTCTAGGCTTGTCACTAGAAAGCTCTATATTTCATCACCGAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTATTCTAGGCTTGTCACTAGAAAGCTCTATATTTCATCACCGAGC  799

seq1  TCTCCGGCCTCACCTATTTTGTTTAGAAGAACCGATTCCTGAGCATCTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGGCCTCACCTATTTTGTTTAGAAGAACCGATTCCTGAGCATCTGA  849

seq1  GACTGCGTGTTGTGTAAGTGTATTACACAGACACACACGGGAATTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCGTGTTGTGTAAGTGTATTACACAGACACACACGGGAATTC  895


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