BAC Information

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BAC

Clone NameB6Ng01-179P23
Chromosome2 (Build37)
Map Location 129,074,550 - 129,210,254
singlet/doubletdoublet
Overlap geneLOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896
Upstream geneLOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik
Downstream geneF830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179P23.bB6Ng01-179P23.g
ACCGA006560GA006561
length854917
definitionB6Ng01-179P23.b B6Ng01-179P23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,074,550 - 129,075,397)(129,208,932 - 129,210,254)
sequence
gaattcacagagatccactggctcctgagtgcttactcatagtctcctga
gtgctgggattaaaggcatgtgccatcacatggagctttgcttttcaaac
acggttggcatctcactgaacatggaacgtactgattggctagactcgct
ggccagcaagcctcagagattctcctgtctctgtggtgccctcctgacct
gcagggctccggctacagacgcacaccactaattctggcattttatgtgg
gatctggggatctgaactcaggtctttactgacagagtcatcactcccaa
ctttgatacttcttttaaaaaataaaaaattagggctggagagatggctc
agcggttaagagcactgattgctcttccagaggtactgagttcaattccc
agcaaccacatggggggctcacaaccatctgtaatgggatctgatgccct
cttctggtgtgtctgaagagagtgacaatatactcacatacataaaataa
ataaatcttttaaaaaattattaaaaaaattaaagagtaacctttatttt
attttatattatatgaatgggtgtcctgcctgtatgtatatatgtgtaat
atgtgtctgaattgcctgcagaggcccaggagagggctttgtatcccctg
ggactagagttacaactggttgtgtgttaccatggggatgctggggatca
gacctgggtccctctggaagccaaaccagagctcttaactgctgagccac
cgttttagcccccagtcttgacactttgtagacagacaaatgtagaaagg
cacttatgggtctgcctctagttgggagaatcaagggcactcagagcaag
ttgg
gaattccatagtcccaggatgtcgcgagagtaggatgtagcaccaggccc
tcctctccacgtgaatgcctagtgtgggcaagaagaattggcattggaag
tcaagcacctgtcctaatctctagcaagtctcaccctgtgactatccgct
tatgttgggaatttggatagagggctaaacaggtcctcgggagcctagaa
gctgctgtgaagtaggaatctattggaaaacattgcagtcgtggctagca
agcagtttcagaaggaacatccatgtggaagtaagggaagacagacaaat
gtgcaatgtcagctagagccacacagtctactgtcaggagccatcttgcc
tgcttctgtgaaagcctgtgtgtcaggcagagtcaaatcaggccaggctc
tgctggcagagttcctggcctgctgacgcatggaccgataagaggggtta
catgtgaagctcaaggagaggggatgaatgtcctgttaatctcagaggaa
ggaacaaggaggaatagggaggcctcgaaatggatacagatatcgaatgt
acctcagccattgtctctgctggcttgtgactttgtttcccacgatactg
taaagtatataaaaacctaagagaattcaactcgaggctgccgcagtact
gaatgggcagtcctcccgatttctaacttctgtctctgagtcttcttttc
catctttcctataattctcactctctcctcagaggactgcttgatttctt
actagctagagtttgtacagtctaccaggcaggagccagggttatgaccc
ttccactcagggacactgaatactcagggactctcaatactttccaagga
cttacatttccagagcacatggaaaataaacttccagatcaggaagttgc
ctaagacctacaaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129074550_129075397
seq2: B6Ng01-179P23.b_43_896

seq1  GAATTCACAGAGATCCACTGGCTCCTGAGTGCTTACTCAGAGTCTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAATTCACAGAGATCCACTGGCTCCTGAGTGCTTACTCATAGTCTCCTGA  50

seq1  GTGCTGGGATTAAAGGCATGTGCCATCACATGGAGCTTTGCTTTTCAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGGCATGTGCCATCACATGGAGCTTTGCTTTTCAAAC  100

seq1  ACGGTTGGCATCTCACTGAACATGGAACGTACTGATTGGCTAGACTCGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTGGCATCTCACTGAACATGGAACGTACTGATTGGCTAGACTCGCT  150

seq1  GGCCAGCAAGCCTCAGAGATTCTCCTGTCTCTGTGGTGCCCTCCTGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCAAGCCTCAGAGATTCTCCTGTCTCTGTGGTGCCCTCCTGACCT  200

seq1  GCAGGGCTCCGGCTACAGACGCACACCACTAATTCTGGCATTTTATGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTCCGGCTACAGACGCACACCACTAATTCTGGCATTTTATGTGG  250

seq1  GATCTGGGGATCTGAACTCAGGTCTTTACTGACAGAGTCATCACTCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGGGATCTGAACTCAGGTCTTTACTGACAGAGTCATCACTCCCAA  300

seq1  CTTTGATACTTCTTTTAAAAAATAAAAAATTAGGGCTGGAGAGATGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATACTTCTTTTAAAAAATAAAAAATTAGGGCTGGAGAGATGGCTC  350

seq1  AGCGGTTAAGAGCACTGATTGCTCTTCCAGAGGTACTGAGTTCAATTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTTAAGAGCACTGATTGCTCTTCCAGAGGTACTGAGTTCAATTCCC  400

seq1  AGCAACCACATGGGGGGCTCACAACCATCTGTAATGGGATCTGATGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCACATGGGGGGCTCACAACCATCTGTAATGGGATCTGATGCCCT  450

seq1  CTTCTGGTGTGTCTGAAGAGAGTGACAATATACTCACATACATAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTGTGTCTGAAGAGAGTGACAATATACTCACATACATAAAATAA  500

seq1  ATAAATCTTTTAAAAAATTATTAAAAAAATTAAAGAGTAACCTTTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTTTAAAAAATTATTAAAAAAATTAAAGAGTAACCTTTATTTT  550

seq1  ATTTTATATTATATGAATGGGTGTCCTGCCTGTATGTATATATGTGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATTATATGAATGGGTGTCCTGCCTGTATGTATATATGTGTAAT  600

seq1  ATGTGTCTGAATTGCCTGCAGAGG-CCAGGAGAGGGCTTTGTATCCCCTG  649
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGTGTCTGAATTGCCTGCAGAGGCCCAGGAGAGGGCTTTGTATCCCCTG  650

seq1  GGACTAGAGTTACAACTGGTTGTGTGTTACCATGGGGATGCTGGGGATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGAGTTACAACTGGTTGTGTGTTACCATGGGGATGCTGGGGATCA  700

seq1  GACCTGGGT-CCTCTGGAAGCC-AACCAGAGCTCTTAACTGCTGAGCCAC  747
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  GACCTGGGTCCCTCTGGAAGCCAAACCAGAGCTCTTAACTGCTGAGCCAC  750

seq1  CG-TTTAG-CCCCAGTCTTGACACTTTGTAGACAGACAAATGTAGAAAGG  795
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTAGCCCCCAGTCTTGACACTTTGTAGACAGACAAATGTAGAAAGG  800

seq1  CACTTAT-GGTCTGCCTCTAGGTGGGAGAATCAAAGGCACTCAGAGCAAG  844
      ||||||| ||||||||||||| |||||||||||| |||||||||||||||
seq2  CACTTATGGGTCTGCCTCTAGTTGGGAGAATCAAGGGCACTCAGAGCAAG  850

seq1  TTGG  848
      ||||
seq2  TTGG  854

seq1: chr2_129208932_129210254
seq2: B6Ng01-179P23.g_70_986 (reverse)

seq1  CACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCCGAGTGCTAGGATTAAAAGCGTGTGCCACCATGCCCGGCTGCATAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTGGTTTTTTTGTTTTTTGTTTTTTTTTTTTTTTTTTTTAAAGAAACCAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AATTCTGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGATGGCTCACAACCAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTAATGGAATCTGATGCAGTCTTCTGGTGTGTCTGAAGACAGCTACAG  300
                                                        
seq2  --------------------------------------------------  0

seq1  AGTACTCATATAAAAATAAATAAATCTTTAAAAAAAAGAAACCAAAATTC  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTACTACATGGGTGATTAAGATATTTCAAAGACTGGAGAAAGGGACATTT  400
                                                        
seq2  --------------------------------------------------  0

seq1  TCTATTCAGCTTCTCACTTTGT-GGTCTTA-GCAAC-TCCTG-TCTGGAG  446
                    |||||||| ||||||| ||||| ||||| |||||| 
seq2  --------------CACTTTGTAGGTCTTAGGCAACTTCCTGATCTGGAA  36

seq1  TTTTATTT--CCTGTGCTCTGGAAAATGTAAGTCC-TGGAAAGTATTGAG  493
       |||||||  | |||||||||| |||||||||||| ||||||||||||||
seq2  GTTTATTTTCCATGTGCTCTGG-AAATGTAAGTCCTTGGAAAGTATTGAG  85

seq1  AGTCCCTGAGTATTCAGTGTCCCTGAGTGGGAGGGTCATAACCCTGGCTC  543
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTCCCTGAGTATTCAGTGTCCCTGAGTGGAAGGGTCATAACCCTGGCTC  135

seq1  CTGCCTGGTAGACTGTAC-AACTCTAGCTAGTAAGAAATCAAGCAGTCCT  592
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGCCTGGTAGACTGTACAAACTCTAGCTAGTAAGAAATCAAGCAGTCCT  185

seq1  CTGAGGAGAGAGTGAGAATTATAGGAAAGATGGAAAAGAAGACTCAGAGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGAGAGTGAGAATTATAGGAAAGATGGAAAAGAAGACTCAGAGA  235

seq1  CAGAAGTTAGAAATCGGGAGGACTGCCCATTCAGTACTGCGGCAGCCTCG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTAGAAATCGGGAGGACTGCCCATTCAGTACTGCGGCAGCCTCG  285

seq1  AGTTGAATTCTCTTAGG-TTTTATATACTTTACAGTATCGTGGGAAACAA  741
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGTTGAATTCTCTTAGGTTTTTATATACTTTACAGTATCGTGGGAAACAA  335

seq1  AGTCACAAGCCAGCAGAGACAATGGCTGAGGTACATTCGATATCTGTATC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAAGCCAGCAGAGACAATGGCTGAGGTACATTCGATATCTGTATC  385

seq1  CATTTCGAGGCCTCCCTATTCCTCCTTGTTCCTTCCTCTGAGATTAACAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCGAGGCCTCCCTATTCCTCCTTGTTCCTTCCTCTGAGATTAACAG  435

seq1  GACATTCATCCCCTCTCCTTGAGCTTCACATGTAACCCCTCTTATCGGTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCATCCCCTCTCCTTGAGCTTCACATGTAACCCCTCTTATCGGTC  485

seq1  CATGCGTCAGCAGGCCAGGAACTCTGCCAGCAGAGCCTGGCCTGATTTGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGTCAGCAGGCCAGGAACTCTGCCAGCAGAGCCTGGCCTGATTTGA  535

seq1  CTCTGCCTGACACACAGGCTTTCACAGAAGCAGGCAAGATGGCTCCTGAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTGACACACAGGCTTTCACAGAAGCAGGCAAGATGGCTCCTGAC  585

seq1  AGTAGACTGTGTGGCTCTAGCTGACATTGCACATTTGTCTGTCTTCCCTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACTGTGTGGCTCTAGCTGACATTGCACATTTGTCTGTCTTCCCTT  635

seq1  ACTTCCACATGGATGTTCCTTCTGAAACTGCTTGCTAGCCACGACTGCAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACATGGATGTTCCTTCTGAAACTGCTTGCTAGCCACGACTGCAA  685

seq1  TGTTTTCCAATAGATTCCTACTTCACAGCAGCTTCTAGGCTCCCGAGGAC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCAATAGATTCCTACTTCACAGCAGCTTCTAGGCTCCCGAGGAC  735

seq1  CTGTTTAGCCCTCTATCCAAATTCCCAACATAAGCGGATAGTCACAGGGT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGCCCTCTATCCAAATTCCCAACATAAGCGGATAGTCACAGGGT  785

seq1  GAGACTTGCTAGAGATTAGGACAGGTGCTTGACTTCCAATGCCAATTCTT  1241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTGCTAGAGATTAGGACAGGTGCTTGACTTCCAATGCCAATTCTT  835

seq1  CTTGCCCACACTAGGCATTCACGTGGAGAGGAGGGCCTGGTGCTACATCC  1291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCACACTAGGCATTCACGTGGAGAGGAGGGCCTGGTGCTACATCC  885

seq1  TACTCTCGCGACATCCTGGGACTATGGAATTC  1323
      ||||||||||||||||||||||||||||||||
seq2  TACTCTCGCGACATCCTGGGACTATGGAATTC  917