BAC Information

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BAC

Clone NameB6Ng01-180A01
Chromosome2 (Build37)
Map Location 145,424,100 - 145,425,230
singlet/doubletsinglet
Overlap geneSlc24a3
Upstream geneDtd1, 1700010M22Rik, LOC627312, OTTMUSG00000015643
Downstream geneLOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180A01.g
ACCGA006562
length1,128
definitionB6Ng01-180A01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgagagcaagagctgttattcgcagttttatttgagtcctgc
tgttttgaacatctggaatggtgggaaagccgaggcctcagcagaaacaa
tctccttagcttctatatttggtgtgactcaggggtagaggcttgcttgt
taccttactgtccacaagtctgctgtgcagctgtgtgctttatggtgacc
aggtgagagggtgtcatggctacagagaaaccttgctgacaacattcctc
aattcccttatcctttagattctatctgtgtttgaagaccaggtcatttt
gcaaagcctccattaaattcacaactgtcactactagaatttgagaaccc
aaatgctctagcacagaggggaccctgggtggcaatgctggaattgctta
aggatcagtttctcaaaaggaaacaaaaggattcttgactctaggaaccc
aaatttagagcttccaaaatctatctatctatctatctatctttctttct
ttctttctttctttctttctttctttctttctttctttctttctttcttc
cttccttccttccttccttccttcctttctttctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttctttctttcttt
cgagacagggtttctctgtgtagtcctggctgtcctggaactcactctgt
agaaccaggctggtctcgaactcagaaatctgcctgcctctgcctcccaa
gttctgggattaaaggcatgtgccaccactgcccggcaaaataatttttt
ttaagaaggtgaaataattaagtggaaggcaaggaaggaagctgtgagaa
gcttcctaccggcactgactccattcataggcttgccatttgaagcaaag
aagagtaagacagctgctccaacttaagctttctcttcagaagctttgga
aagcttgtgggtcagctgttgttctcagtggagatcactaaattagttat
ccaggggaaggtaactagttacatgtgtgctgacttcttcactttcccct
tcaggtttcttggtaacattcaacccactgcatggtgtttaccttacttc
atgattgaacgattgatgaggtacatca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145424100_145425230
seq2: B6Ng01-180A01.g_63_1190 (reverse)

seq1  TGATGTACCTCATCTATATCGT--CATCATGAAGTAAGTAAAACA-CATG  47
      ||||||||||||||   |||||   |||||||||||||  ||||| ||||
seq2  TGATGTACCTCATC--AATCGTTCAATCATGAAGTAAGGTAAACACCATG  48

seq1  CAGTGTGTTTGAAATTGTTACAAAGAAA-CTG-AGGGGAAAGTG-AGAAG  94
      ||||| | |||||  |||||| |||||| ||| ||||||||||| |||||
seq2  CAGTG-GGTTGAA--TGTTACCAAGAAACCTGAAGGGGAAAGTGAAGAAG  95

seq1  TCAGCACACCATGTAACTAGTTACCTTCCCCTGGGATTACTAA-TTAGTG  143
      |||||||| ||||||||||||||||||||||| |||| ||||| ||||||
seq2  TCAGCACA-CATGTAACTAGTTACCTTCCCCT-GGATAACTAATTTAGTG  143

seq1  ATCTCCCACTGAGAAC-ACAGCTGACCCACAGGCTTTCCAAAGCTTCTGA  192
      |||| ||||||||||| |||||||||||||| ||||||||||||||||||
seq2  ATCT-CCACTGAGAACAACAGCTGACCCACAAGCTTTCCAAAGCTTCTGA  192

seq1  AGAGAAAGCTTAAGTTGGAGCAGCTGTCTTACTCTTCTTTGCTTCAAATG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCTTAAGTTGGAGCAGCTGTCTTACTCTTCTTTGCTTCAAATG  242

seq1  GCAAGCCTATGAATGGAGTCAGTGCCGGTAGGAAGCTTCTCACAGCTTCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCTATGAATGGAGTCAGTGCCGGTAGGAAGCTTCTCACAGCTTCC  292

seq1  TTCCTTGCCTTCCACTTAATTATTTCACCTTCTT-AAAAAAATTATTTTG  341
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCCTTGCCTTCCACTTAATTATTTCACCTTCTTAAAAAAAATTATTTTG  342

seq1  CCGGGCAGTGGTGGCACATGCCTTTAATCCCAGAACTTGGGAGGCAGAGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCAGTGGTGGCACATGCCTTTAATCCCAGAACTTGGGAGGCAGAGG  392

seq1  CAGGCAGATTTCTGAGTTCGAGACCAGCCTGGTTCTACAGAGTGAGTTCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATTTCTGAGTTCGAGACCAGCCTGGTTCTACAGAGTGAGTTCC  442

seq1  AGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAGAAAGAAAGAA  491
      |||||||||||||||||||||||||||||||||||    |||||||||||
seq2  AGGACAGCCAGGACTACACAGAGAAACCCTGTCTC----GAAAGAAAGAA  488

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  538

seq1  AAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAA  588

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  638

seq1  ATAGATAGATAGATAGATAGATTTTGGAAGCTCTAAATTTGGGTTCCTAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGATTTTGGAAGCTCTAAATTTGGGTTCCTAG  688

seq1  AGTCAAGAATCCTTTTGTTTCCTTTTGAGAAACTGATCCTTAAGCAATTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGAATCCTTTTGTTTCCTTTTGAGAAACTGATCCTTAAGCAATTC  738

seq1  CAGCATTGCCACCCAGGGTCCCCTCTGTGCTAGAGCATTTGGGTTCTCAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTGCCACCCAGGGTCCCCTCTGTGCTAGAGCATTTGGGTTCTCAA  788

seq1  ATTCTAGTAGTGACAGTTGTGAATTTAATGGAGGCTTTGCAAAATGACCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTAGTGACAGTTGTGAATTTAATGGAGGCTTTGCAAAATGACCT  838

seq1  GGTCTTCAAACACAGATAGAATCTAAAGGATAAGGGAATTGAGGAATGTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCAAACACAGATAGAATCTAAAGGATAAGGGAATTGAGGAATGTT  888

seq1  GTCAGCAAGGTTTCTCTGTAGCCATGACACCCTCTCACCTGGTCACCATA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAAGGTTTCTCTGTAGCCATGACACCCTCTCACCTGGTCACCATA  938

seq1  AAGCACACAGCTGCACAGCAGACTTGTGGACAGTAAGGTAACAAGCAAGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACAGCTGCACAGCAGACTTGTGGACAGTAAGGTAACAAGCAAGC  988

seq1  CTCTACCCCTGAGTCACACCAAATATAGAAGCTAAGGAGATTGTTTCTGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCCCTGAGTCACACCAAATATAGAAGCTAAGGAGATTGTTTCTGC  1038

seq1  TGAGGCCTCGGCTTTCCCACCATTCCAGATGTTCAAAACAGCAGGACTCA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCTCGGCTTTCCCACCATTCCAGATGTTCAAAACAGCAGGACTCA  1088

seq1  AATAAAACTGCGAATAACAGCTCTTGCTCTCATGGAATTC  1131
      ||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACTGCGAATAACAGCTCTTGCTCTCATGGAATTC  1128