BAC Information

Click to search

BAC

Clone NameB6Ng01-180A08
Chromosome2 (Build37)
Map Location 107,061,146 - 107,062,137
singlet/doubletsinglet
Overlap genenone
Upstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb
Downstream geneKcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180A08.bB6Ng01-180A08.g
ACCGA006572GA006573
length1,065981
definitionB6Ng01-180A08.b B6Ng01-180A08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccaaatggctgagaagcatctaaaaaatgt
tcaacatccttaatcatcagggaaatgcaaatgaaaacaaccgtgagatt
ctacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagca
gatgctggcgaggacaaggagaaaaagaaacactcctcctttgctggtgg
gactgcaaactagtacaaccaccctggtaatcagtttggcagtttctctg
aaaattagacatagttataccaaaagatccagcaatatcactcctgggca
tattcccagaaaatgctccaacatgtaataaggacacatgctccactatg
ttcatagcagcctcatttataatacccagaagctggaaagaacccagatg
tccttcaacaggggaatggatacagaaaacgtggtacatttacacaatgg
agtactacgcagctatttaaagcaatgaatttatgaaattcctcaacaaa
tggattgatctggaggatatcatcctaagtgaggtaaccaaatcacaaaa
caacacacatgatatgcaccgaattataagtggatattagcccagaagct
cagaatccttcttagaagggaaaacaacatacccatggaaggaggtacag
agacaaagttcggagcagagactgaaagaacgaccatccagggactgctt
cacttagggattcacccataaacaaccaccaaacccagacactatggcag
atgccaacaagagcctgctgaaaggagcctgatatagctgtctcctgagg
ggctctgccagtgcctggcaaatacagaagtggatactcacgccatccat
tagatggagcacaaggcccccaatgaagggaactagagaaagtacccaaa
ggagctgaaggtgtttgaagcccaataagaggaacatcattatgaactta
accagtaccctcagatttcttggaactaaaccaccaatcaaagaaaaaca
catgtgggaacttgtggctctagctgtacatgttagcatagtatggccta
gtcagtcatcattag
gaattctttgtttagctctgtaccccgttttttaatagggctgcttcatt
ctttagagtctaacttcttgagttctttgtatacattggatattaggcct
ccatcagatgtatggtaggtaaagatcttttcccaacctgttggttgccg
ttttgtcctattgacagtatcctttgccttacggaagcttcagtaagcac
tcttactccatggcttttgcctcagttcctgtctgagtttctgccttgag
tttctcccctgatttctctcagtgatggattttgatctgatagttgtaaa
atgaaactaactcttccccaaagtttttacatctttgtgaatgatcaaag
gtaaaaatagtaagtagaagaaagagagagagagagagagagagagagag
agagagagaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa
ggaaagaaagaaagaaagagtgaataccatgccatgaataagaccacagg
ccacaaaattagtaatatacaagactagacacagtgttgctctgccatca
tcatctattttcttaatattctgttcacatttgaagtgaaaatagttact
tcatagagaaacaggtactttttttgttttaaagttgcctttgtgttccc
ttacaaccctaggagattggaaacactgtaccctgcttcctccctggtat
gaagataaaattgtctggatgatgcagtgttcttgagctgactcatccac
gacaactgctttcatctagtaagttgcattgcatcatgaaatacagtgac
atatataagttcagagctaagtccttttcaagtgacacaggaagtgtaga
aaataaagtcctttactgaaaatctgagaaggattcaaaacatgaattta
attggggcatatcctggttgtcttctctccctggctagttgtgattcaat
atcatcttcagataacatagctgcagtctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_107061146_107062137
seq2: B6Ng01-180A08.g_63_1043

seq1  GAATTCTTTGTTTAGCTCTGTACCCCGTTTTTTAATAGGGCTGCTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCGTTTTTTAATAGGGCTGCTTCATT  50

seq1  CTTTAGAGTCTAACTTCTTGAGTTCTTTGTATACATTGGATATTAGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGTCTAACTTCTTGAGTTCTTTGTATACATTGGATATTAGGCCT  100

seq1  CCATCAGATGTATGGTAGGTAAAGATCTTTTCCCAACCTGTTGGTTGCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGATGTATGGTAGGTAAAGATCTTTTCCCAACCTGTTGGTTGCCG  150

seq1  TTTTGTCCTATTGACAGTATCCTTTGCCTTACGGAAGCTTCAGTAAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCTATTGACAGTATCCTTTGCCTTACGGAAGCTTCAGTAAGCAC  200

seq1  TCTTACTCCATGGCTTTTGCCTCAGTTCCTGTCTGAGTTTCTGCCTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTCCATGGCTTTTGCCTCAGTTCCTGTCTGAGTTTCTGCCTTGAG  250

seq1  TTTCTCCCCTGATTTCTCTCAGTGATGGATTTTGATCTGATAGTTGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCCTGATTTCTCTCAGTGATGGATTTTGATCTGATAGTTGTAAA  300

seq1  ATGAAACTAACTCTTCCCCAAAGTTTTTACATCTTTGTGAATGATCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTAACTCTTCCCCAAAGTTTTTACATCTTTGTGAATGATCAAAG  350

seq1  GTAAAAATAGTAAGTAGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATAGTAAGTAGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAG  400

seq1  AGAGAGAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  450

seq1  GGAAAGAAAGAAAGAAAGAGTGAATACCATGCCATGAATAAGACCACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAGAAAGAAAGAGTGAATACCATGCCATGAATAAGACCACAGG  500

seq1  CCACAAAATTAGTAATATACAAGACTAGACACAGTGTTGCTCTGCCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAATTAGTAATATACAAGACTAGACACAGTGTTGCTCTGCCATCA  550

seq1  TCATCTATTTTCTTAATATTCTGTTCACATTTGAAGTGAAAATAGTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATTTTCTTAATATTCTGTTCACATTTGAAGTGAAAATAGTTACT  600

seq1  TCATAGAGAAACAGGTACTTTTTTTGTTTTAAAGTTGCCTTTGTGTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAGAAACAGGTACTTTTTTTGTTTTAAAGTTGCCTTTGTGTTCCC  650

seq1  TTACAACCCTAGGAGATTGGAAACACTGTACCCTGCTTCCTCCCTGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACCCTAGGAGATTGGAAACACTGTACCCTGCTTCCTCCCTGGTAT  700

seq1  GAAGATAAAATTGTCTGGATGATGCAGTGTTCTTGAGCTGACTCATCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAAATTGTCTGGATGATGCAGTGTTCTTGAGCTGACTCATCCAC  750

seq1  GACAACTGCTTTCATCTAGTAAGTTGCATTGCATCATGAAATACAGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTGCTTTCATCTAGTAAGTTGCATTGCATCATGAAATACAGTGAC  800

seq1  ATATATAAGTTCAGAGCTAAGTCCTTTTCAAAGTGACACAGGAAGTGTAG  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATATATAAGTTCAGAGCTAAGTCCTTTTC-AAGTGACACAGGAAGTGTAG  849

seq1  AAAATAAAAGTCCTTTACTGAAAAATCTGAGAAGGAATTTCAAAAACATG  900
      ||||| |||||||||||||| |||||||||||||||  ||| ||||||||
seq2  AAAAT-AAAGTCCTTTACTG-AAAATCTGAGAAGGA--TTC-AAAACATG  894

seq1  AATTTAATTGGGGCATATCCTGGTTTGTCTTCTCTTCCCTGGCTAGTTGT  950
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  AATTTAATTGGGGCATATCCTGG-TTGTCTTCTC-TCCCTGGCTAGTTGT  942

seq1  GATTCAATTAATCATTCTTCAGATTACATAGCTGCAGTCTAG  992
      ||||||||  |||| ||||||||| |||||||||||||||||
seq2  GATTCAAT--ATCA-TCTTCAGATAACATAGCTGCAGTCTAG  981