BAC Information

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BAC

Clone NameB6Ng01-180A09
Chromosome2 (Build37)
Map Location 101,310,529 - 101,311,722
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44, Fjx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180A09.bB6Ng01-180A09.g
ACCGA006574GA006575
length1,1911,086
definitionB6Ng01-180A09.b B6Ng01-180A09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttattatggtctagacattgtattttataatgcaactggccttt
gatgtctttgggacctccaaatgtggatctacctaatgactgagtgaaaa
catttggcaatgtttgtactgcgcaagtacagcccccttttcttgtcatt
attctctgagtataaaaatgattcatagtacatttacattgtagtaagta
tgatgggcaactcagacatgatttagagtatattggaggatatgggcagt
atggaagtgcagtgtatgtaaatattatgccattcttgggttttgagcac
ctgcaggttttaatgtcggtggggaattgacttttgtggatactgactgt
acctcatttaatcactacaagagctaaatgggataaagatttctaatttt
caaataatacttataagctaagttgtcctcaaattcctggactgctaggg
gctcatattgaagtgctttatagtctatggcccacttatagagtctgaaa
tctgagaaaattatggatgtccctccagcacgctacagcctccattatct
cagtagaaaccagctctctaaccactgggatccttacttccttggcctcc
tcagtagacatccagtacttgtggcttcctttactccactgtgtgttgaa
gggcctgccaaggcaccatcagtattctttacagcacatctaattagatt
cttgttctccaggaaacctgtcaatttttttttcttcagtatttggaaat
tcattctagttattacttttttgctgtttacttttgatacacagactctc
tacgcaaccctggctggcctcaaattcacagagatccacttggcactggc
ccctgagtactggaattaaaggcacatgacaaagcaccacgatcgaggtc
tgactttgttagcgtgcccctcctcacgtctactctagattctctggatt
catttggctcaattccttatgcacctttgccatgaaagaactgctgattt
cccaatctattttcacaatttttatgtagttaaaacaccgagctttattt
tcttcactggaatggtaaagcagaaattctttttctcttactaatctttc
tcttcctagcttatgcattaagaagttagcttatccgaagaattgactac
agcacagcattgctgttctggtccaggaatttttccgtgcc
gaattctctgtttagctctatatcccatttttaattgggtttcttggttt
gggggagtctaacttttgttagactttttgagttctttatgtattgtgga
tattagttctctatcaggtgtagagttagtgaagatcttttcccaatctg
taggttgccattttgtcctattgacagtatcctttgccttacagaaactt
ttcactttcaggaggtcccatttatcaaacgttgatcttagagcctgagt
cgttgaagctttcccctgtgccaatgcattcaaggctactttctcgtcta
ttagattcagtgtatctggttttatgttgaaggtggagagactctaccag
cagctgagacaaatgcagatactcacagccaagcattggactgaagtcag
aacccccaaggaagagttagaagaaggattgaaggagctgaaggggatgc
caactccataggaaaaacaacagtgtcaactaacctgaacccctgggagc
tcccactgactaagccaccaaccaaagttcatacatgggctggtcagagg
cccttggcacatatgtagcagaggactgccctgtctggcctcagtgggag
aggatatgtcaatcctataaaaacttgatgcctcagggaagatggagagc
accctatcaggggcaaatgggagggtgggtggggtgaagaactctgagag
gggagactgggatatgtgacaaaaataaagcatgtggtgattaaataata
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagccgagaa
agaaagaaaggaaaatgtataggtctccatgttggtatgtgtacatagaa
ttcagattctcatggaggcacaaagagtggcatcagatctcctagagttt
gagttacaggaatttgggaagtcacttggctctcatggcagggatcagcc
cttcaaagagcagtccatgccctctaattcttgcgccaagtttttccgtc
cccatctcaagcctcattttggttactgaacggcatttcacaggaacctt
cagtgccagacaacctgtccttaagcattttaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101310529_101311722
seq2: B6Ng01-180A09.b_42_1232 (reverse)

seq1  GGCACAGGGGAAAAATTCCT-GAACAGAACAGCAATGGCTTGTGCTGTAG  49
      |||||   |||||||||||| || |||||||||||||   ||||||||||
seq2  GGCAC---GGAAAAATTCCTGGACCAGAACAGCAATG--CTGTGCTGTAG  45

seq1  TCATTTCTTACGATAACCATAAACTACTAATGCATAAGCCTAGG-AGAG-  97
      ||| |||||  ||||| | |||  |  ||||||||||| ||||| |||| 
seq2  TCAATTCTTCGGATAAGC-TAACTTCTTAATGCATAAG-CTAGGAAGAGA  93

seq1  AAGATTAGGTA-AGAAAAAGAATTACTGCTTTACCAATCCAGTGAAGGAA  146
      ||||||||  | |||||||||||| ||||||||||| |||||||||| ||
seq2  AAGATTAGTAAGAGAAAAAGAATTTCTGCTTTACCATTCCAGTGAAGAAA  143

seq1  ATAAAGCTCGTGTTTTTAACTACATAAAA--TGTGAAAATAGATTGGGAA  194
      ||||||||||   ||||||||||||||||  |||||||||||||||||||
seq2  ATAAAGCTCGGTGTTTTAACTACATAAAAATTGTGAAAATAGATTGGGAA  193

seq1  ATCAGCAGTTCTTTTCATGGCAAAGGTGCATAAGGAATTGAGCCAAATGA  244
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGTTC-TTTCATGGCAAAGGTGCATAAGGAATTGAGCCAAATGA  242

seq1  ATCCAGAGAAATCTAGAGTAGACGTGAGGAGGGGCACGCTAACAAAGTCA  294
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAG-AATCTAGAGTAGACGTGAGGAGGGGCACGCTAACAAAGTCA  291

seq1  GACCTCGATCGTGGTGCTTTGTCATGTGCCTTTAATTCCAGTACTCAGGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCGATCGTGGTGCTTTGTCATGTGCCTTTAATTCCAGTACTCAGGG  341

seq1  GCCAGTGCCAAGTGGATCTCTGTGAATTTGAGGCCAGCCAGGGTTGCGTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGCCAAGTGGATCTCTGTGAATTTGAGGCCAGCCAGGGTTGCGTA  391

seq1  GAGAGTCTGTGTATCAAAAGTAAACAGCAAAAAAGTAATAACTAGAATGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCTGTGTATCAAAAGTAAACAGCAAAAAAGTAATAACTAGAATGA  441

seq1  ATTTCCAAATACTGAAGAAAAAAAAATTGACAGGTTTCCTGGAGAACAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAATACTGAAGAAAAAAAAATTGACAGGTTTCCTGGAGAACAAG  491

seq1  AATCTAATTAGATGTGCTGTAAAGAATACTGATGGTGCCTTGGCAGGCCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAATTAGATGTGCTGTAAAGAATACTGATGGTGCCTTGGCAGGCCC  541

seq1  TTCAACACACAGTGGAGTAAAGGAAGCCACAAGTACTGGATGTCTACTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACACAGTGGAGTAAAGGAAGCCACAAGTACTGGATGTCTACTGA  591

seq1  GGAGGCCAAGGAAGTAAGGATCCCAGTGGTTAGAGAGCTGGTTTCTACTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAAGGAAGTAAGGATCCCAGTGGTTAGAGAGCTGGTTTCTACTG  641

seq1  AGATAATGGAGGCTGTAGCGTGCTGGAGGGACATCCATAATTTTCTCAGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGGAGGCTGTAGCGTGCTGGAGGGACATCCATAATTTTCTCAGA  691

seq1  TTTCAGACTCTATAAGTGGGCCATAGACTATAAAGCACTTCAATATGAGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACTCTATAAGTGGGCCATAGACTATAAAGCACTTCAATATGAGC  741

seq1  CCCTAGCAGTCCAGGAATTTGAGGACAACTTAGCTTATAAGTATTATTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCAGTCCAGGAATTTGAGGACAACTTAGCTTATAAGTATTATTTG  791

seq1  AAAATTAGAAATCTTTATCCCATTTAGCTCTTGTAGTGATTAAATGAGGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGAAATCTTTATCCCATTTAGCTCTTGTAGTGATTAAATGAGGT  841

seq1  ACAGTCAGTATCCACAAAAGTCAATTCCCCACCGACATTAAAACCTGCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGTATCCACAAAAGTCAATTCCCCACCGACATTAAAACCTGCAG  891

seq1  GTGCTCAAAACCCAAGAATGGCATAATATTTACATACACTGCACTTCCAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAAAACCCAAGAATGGCATAATATTTACATACACTGCACTTCCAT  941

seq1  ACTGCCCATATCCTCCAATATACTCTAAATCATGTCTGAGTTGCCCATCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCATATCCTCCAATATACTCTAAATCATGTCTGAGTTGCCCATCA  991

seq1  TACTTACTACAATGTAAATGTACTATGAATCATTTTTATACTCAGAGAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTACAATGTAAATGTACTATGAATCATTTTTATACTCAGAGAAT  1041

seq1  AATGACAAGAAAAGGGGGCTGTACTTGCGCAGTACAAACATTGCCAAATG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAAGAAAAGGGGGCTGTACTTGCGCAGTACAAACATTGCCAAATG  1091

seq1  TTTTCACTCAGTCATTAGGTAGATCCACATTTGGAGGTCCCAAAGACATC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTCAGTCATTAGGTAGATCCACATTTGGAGGTCCCAAAGACATC  1141

seq1  AAAGGCCAGTTGCATTATAAAATACAATGTCTAGACCATAATAAGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAGTTGCATTATAAAATACAATGTCTAGACCATAATAAGAATTC  1191