BAC Information

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BAC

Clone NameB6Ng01-180B24
Chromosome2 (Build37)
Map Location 29,786,376 - 29,939,140
singlet/doubletdoublet
Overlap geneGle1l, Spna2, LOC665532, Wdr34, Set, Pkn3
Upstream geneLOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2
Downstream geneZdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180B24.bB6Ng01-180B24.g
ACCGA006647GA006648
length1,131923
definitionB6Ng01-180B24.b B6Ng01-180B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,938,024 - 29,939,140)(29,786,376 - 29,787,292)
sequence
gaattcactgtttcagctagacttggctggccagcgagtctggagaaccc
atgtctctgtacggccagccatgaacttagagacacaccaagccacacat
ggtttttacacagatcctggggatttgaactcaggtcctcatgcttccac
agtaaacactttacccactgagccatcaccccaacccaaaatgtcagtcc
taaagatcccctgttagaggtcaggggtcagtaggaacctgggcaaagag
ccgcccctgaggcaccagactgagagaaagctggtgacaggcattgtcca
ggaagtcctcaagcttcagaaacgccacaccacacaactgtcgccagtcc
cgccagtgaaccccaatctccagctcgcgagcctatgtggaaaagatcag
gctcagccctcacctgagtgcccccccccgtaccccacagctaaccctaa
ccacacaaaggccagcctactcggtccaaggagatgataaaactctggtc
ccaggatttctcagccaccagtccccatcctgtctggcccacaacacgat
tgtcaaccttcaacacagccagtacctcacctgtagtgccagggcttgga
tttagggcatggccagagcagggggcctcaccacctcccatggtttctcc
ctactcactggccagttcgcctccaccacgctgctgccgggaccttgttc
ggagccagctttcagaagggctacctgccaggacagccatgggagaccgt
ccaggcacagctaccagcagatctttgcagcccaggaggcgaacctgcag
tgtccctggttgggagtcaagagagccctctgtcagcagccaccaccaat
ggaaccccagagggacaccacctgctctaggagggtcagagctaggagca
gccgatctaaaccctacctaccacacttagttacccacccagcatcctta
gcagcccgggctagctcctcctttcctggagtgccctatgcagtgggcaa
gaacaccagtcagggaatgtagaacaggacttctcccaagctttgtaagt
cacaagatgagggaacctgctaccttggagctcagggtctggtggcacca
tgggtcttcaagttgtcacaaggggcaggca
gaattctctaatcctcacagccgtgcatttgccacattaggtaccagatt
ttgaaatccctggaactttacatacagagtctgcttcctttcctcaggga
atgtttggacggactgttccatgcagactccttccagccctcctctttcc
aggcatctctctcttggggttttttgagctaaagttgcaggaatccttct
ccactgaatgcctacattgccttttctttcctttttatttatttattttt
tattttatttttttaataaaaatagaactttatttgtatcaagaaatagt
gaaaacaggtaaattagtatctgaggtaaattagtcagggctcatggaga
tgagatgttcacggctcccttgctcctgtggaatctgtagctacgaatgt
catgaaaataaatacattgtttgcgtccctcattacatagcaactggcat
agtcccagctacagcaggtgtgttcacaatgaactgtttggacacagacc
taacagtggcaagtgtgcttgtaaccatgtggtctggtttcacagttctg
ggaactgcaactcccagcctcttactccaggaacaatacccaacggtgtc
atccttgcgcaggggccatggtgatctgtattgttccagctgtagtggat
gctctgctgaaggggagtcagcttttctcctcctggtgggtcctgcagga
agcagtgtttctccttggtgcccggggaaacctccccatgtctgttttcc
tataggccacttgtttcctcacgaccatccggcctgacaatcagaattcc
tatctcatttgcttgtcagtttccctttgatctctgggaattcctttatt
tttagaaatttttgtgggtttacgggaaataagtttggaccacctatgtc
cgactccctttgatttcccctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_29938024_29939140
seq2: B6Ng01-180B24.b_47_1177 (reverse)

seq1  TGCCTGCCCC-TGTG--CACTTG-AGA-CCATGGTGCCCACCAGACCCTG  45
      |||||||||| ||||   ||||| ||| |||||||| |||||||||||||
seq2  TGCCTGCCCCTTGTGACAACTTGAAGACCCATGGTG-CCACCAGACCCTG  49

seq1  AGCT-CAAGGTAGCAGTTTCCCTCATCCTGTGGCTTTACAAAGCTTGGGA  94
      |||| ||||||||||| |||||||||| |||| | |||||||||||||||
seq2  AGCTCCAAGGTAGCAGGTTCCCTCATCTTGTGAC-TTACAAAGCTTGGGA  98

seq1  GAAGTCCTGTTCTTACATT-CCTG-CT-GTGTTCT--GCCACTGCATA-G  138
      |||||||||||| |||||| |||| || |||||||   |||||||||| |
seq2  GAAGTCCTGTTC-TACATTCCCTGACTGGTGTTCTTGCCCACTGCATAGG  147

seq1  GCACT-CAGG-AAGGA-GAGCTAG-CCGGGCTGCTAAGGATGCTGGGT-G  183
      ||||| |||| ||||| ||||||| ||||||||||||||||||||||| |
seq2  GCACTCCAGGAAAGGAGGAGCTAGCCCGGGCTGCTAAGGATGCTGGGTGG  197

seq1  GTAACTAAGTGTGGTAGGTAGGGTTTAGATCGGCTGCTCCTAGCTCTGAC  233
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAAGTGTGGTAGGTAGGGTTTAGATCGGCTGCTCCTAGCTCTGAC  247

seq1  CCTCCTAGAGCAGGTGGTGTCCCTCTGGGGTTCCATTGGTGGTGGCTGCT  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGAGCAGGTGGTGTCCCTCTGGGGTTCCATTGGTGGTGGCTGCT  297

seq1  GACAGAGGGCTCTCTTGACTCCCAACCAGGGACACTGCAGGTTCGCCTCC  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGGCTCTCTTGACTCCCAACCAGGGACACTGCAGGTTCGCCTCC  347

seq1  TGGGCTGCAAAGATCTGCTGGTAGCTGTGCCTGGACGGTCTCCCATGGCT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGCAAAGATCTGCTGGTAGCTGTGCCTGGACGGTCTCCCATGGCT  397

seq1  GTCCTGGCAGGTAGCCCTTCTGAAAGCTGGCTCCGAACAAGGTCCCGGCA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGCAGGTAGCCCTTCTGAAAGCTGGCTCCGAACAAGGTCCCGGCA  447

seq1  GCAGCGTGGTGGAGGCGAACTGGCCAGTGAGTAGGGAGAAACCATGGGAG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGTGGTGGAGGCGAACTGGCCAGTGAGTAGGGAGAAACCATGGGAG  497

seq1  GTGGTGAGGCCCCCTGCTCTGGCCATGCCCTAAATCCAAGCCCTGGCACT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAGGCCCCCTGCTCTGGCCATGCCCTAAATCCAAGCCCTGGCACT  547

seq1  ACAGGTGAGGTACTGGCTGTGTTGAAGGTTGACAATCGTGTTGTGGGCCA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGAGGTACTGGCTGTGTTGAAGGTTGACAATCGTGTTGTGGGCCA  597

seq1  GACAGGATGGGGACTGGTGGCTGAGAAATCCTGGGACCAGAGTTTTATCA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATGGGGACTGGTGGCTGAGAAATCCTGGGACCAGAGTTTTATCA  647

seq1  TCTCCTTGGACCGAGTAGGCTGGCCTTTGTGTGGTTAGGGTTAGCTGTGG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGGACCGAGTAGGCTGGCCTTTGTGTGGTTAGGGTTAGCTGTGG  697

seq1  GGTACGGGGGGGGGCACTCAGGTGAGGGCTGAGCCTGATCTTTTCCACAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACGGGGGGGGGCACTCAGGTGAGGGCTGAGCCTGATCTTTTCCACAT  747

seq1  AGGCTCGCGAGCTGGAGATTGGGGTTCACTGGCGGGACTGGCGACAGTTG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCGCGAGCTGGAGATTGGGGTTCACTGGCGGGACTGGCGACAGTTG  797

seq1  TGTGGTGTGGCGTTTCTGAAGCTTGAGGACTTCCTGGACAATGCCTGTCA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTGGCGTTTCTGAAGCTTGAGGACTTCCTGGACAATGCCTGTCA  847

seq1  CCAGCTTTCTCTCAGTCTGGTGCCTCAGGGGCGGCTCTTTGCCCAGGTTC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTCTCTCAGTCTGGTGCCTCAGGGGCGGCTCTTTGCCCAGGTTC  897

seq1  CTACTGACCCCTGACCTCTAACAGGGGATCTTTAGGACTGACATTTTGGG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGACCCCTGACCTCTAACAGGGGATCTTTAGGACTGACATTTTGGG  947

seq1  TTGGGGTGATGGCTCAGTGGGTAAAGTGTTTACTGTGGAAGCATGAGGAC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGATGGCTCAGTGGGTAAAGTGTTTACTGTGGAAGCATGAGGAC  997

seq1  CTGAGTTCAAATCCCCAGGATCTGTGTAAAAACCATGTGTGGCTTGGTGT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAAATCCCCAGGATCTGTGTAAAAACCATGTGTGGCTTGGTGT  1047

seq1  GTCTCTAAGTTCATGGCTGGCCGTACAGAGACATGGGTTCTCCAGACTCG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAAGTTCATGGCTGGCCGTACAGAGACATGGGTTCTCCAGACTCG  1097

seq1  CTGGCCAGCCAAGTCTAGCTGAAACAGTGAATTC  1117
      ||||||||||||||||||||||||||||||||||
seq2  CTGGCCAGCCAAGTCTAGCTGAAACAGTGAATTC  1131

seq1: chr2_29786376_29787292
seq2: B6Ng01-180B24.g_69_991

seq1  GAATTCTCTAATCCTCACAGCCGTGCATTTGCCACATTAGGTACCAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATCCTCACAGCCGTGCATTTGCCACATTAGGTACCAGATT  50

seq1  TTGAAATCCCTGGAACTTTACATACAGAGTCTGCTTCCTTTCCTCAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCCCTGGAACTTTACATACAGAGTCTGCTTCCTTTCCTCAGGGA  100

seq1  ATGTTTGGACGGACTGTTCCATGCAGACTCCTTCCAGCCCTCCTCTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGGACGGACTGTTCCATGCAGACTCCTTCCAGCCCTCCTCTTTCC  150

seq1  AGGCATCTCTCTCTTGGGGTTTTTTGAGCTAAAGTTGCAGGAATCCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTCTCTCTTGGGGTTTTTTGAGCTAAAGTTGCAGGAATCCTTCT  200

seq1  CCACTGAATGCCTACATTGCCTTTTCTTTCCTTTTTATTTATTTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAATGCCTACATTGCCTTTTCTTTCCTTTTTATTTATTTATTTTT  250

seq1  TATTTTATTTTTTTAATAAAAATAGAACTTTATTTGTATCAAGAAATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTTTTAATAAAAATAGAACTTTATTTGTATCAAGAAATAGT  300

seq1  GAAAACAGGTAAATTAGTATCTGAGGTAAATTAGTCAGGGCTCATGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGGTAAATTAGTATCTGAGGTAAATTAGTCAGGGCTCATGGAGA  350

seq1  TGAGATGTTCACGGCTCCCTTGCTCCTGTGGAATCTGTAGCTACGAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTTCACGGCTCCCTTGCTCCTGTGGAATCTGTAGCTACGAATGT  400

seq1  CATGAAAATAAATACATTGTTTGCGTCCCTCATTACATAGCAACTGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATAAATACATTGTTTGCGTCCCTCATTACATAGCAACTGGCAT  450

seq1  AGTCCCAGCTACAGCAGGTGTGTTCACAATGAACTGTTTGGACACAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGCTACAGCAGGTGTGTTCACAATGAACTGTTTGGACACAGACC  500

seq1  TAACAGTGGCAAGTGTGCTTGTAACCATGTGGTCTGGTTTCACAGTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGGCAAGTGTGCTTGTAACCATGTGGTCTGGTTTCACAGTTCTG  550

seq1  GGAACTGCAACTCCCAGCCTCTTACTCCAGGAACAATACCCAACGGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGCAACTCCCAGCCTCTTACTCCAGGAACAATACCCAACGGTGTC  600

seq1  ATCCTTGCGCAGGGGCCATGGTGATCTGTATTGTTCCAGCTGTAGTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGCGCAGGGGCCATGGTGATCTGTATTGTTCCAGCTGTAGTGGAT  650

seq1  GCTCTGCTGAAGGGGAGTCAGCTTTTCTCCTCCTGGTGGGTCCTGCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTGAAGGGGAGTCAGCTTTTCTCCTCCTGGTGGGTCCTGCAGGA  700

seq1  AGCAGTG-TTCTCCTTGGTGCCCGGGGAAACCT-CCCATGTCTG-TTTCC  747
      ||||||| ||||||||||||||||||||||||| |||||||||| |||||
seq2  AGCAGTGTTTCTCCTTGGTGCCCGGGGAAACCTCCCCATGTCTGTTTTCC  750

seq1  TATAGGCCACTTG-TTCCTCACGACCATCCGGCCTGACAATCAGAATTCC  796
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATAGGCCACTTGTTTCCTCACGACCATCCGGCCTGACAATCAGAATTCC  800

seq1  TATCTCA-TTGCTTGTCAG-TTCTCTTTGTATCTCTGGG-ATTCCTTTAT  843
      ||||||| ||||||||||| ||| ||||| ||||||||| ||||||||||
seq2  TATCTCATTTGCTTGTCAGTTTCCCTTTG-ATCTCTGGGAATTCCTTTAT  849

seq1  TTTT-GAAATTTTTGTGTGGTTTTACAGGAAATAAAGTTTGTATCA-CTA  891
      |||| ||||||||  ||||| ||||| |||||| ||||||| | || |||
seq2  TTTTAGAAATTTT--TGTGGGTTTACGGGAAAT-AAGTTTGGACCACCTA  896

seq1  TGTCAGACT-CCTTTGATTTCCCTTAT  917
      |||| |||| ||||||||||||| |||
seq2  TGTCCGACTCCCTTTGATTTCCCCTAT  923