BAC Information

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BAC

Clone NameB6Ng01-181H11
Chromosome2 (Build37)
Map Location 120,500,488 - 120,615,930
singlet/doubletdoublet
Overlap geneStard9, Cdan1, Ttbk2
Upstream geneLOC625328, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27
Downstream geneUbr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181H11.bB6Ng01-181H11.g
ACCGA007619GA007620
length909922
definitionB6Ng01-181H11.b B6Ng01-181H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,500,488 - 120,501,266)(120,615,010 - 120,615,930)
sequence
gaattcaaaatcagtctgggctataacaagttcaaggccaccgggcaagt
tggcacacacctttaatccagcatttaggagggagagacaggtggatctc
tgtaaatttgagccctggtctacaaagctagtccaggacagccagggcta
tacagagaaaccctgccccccaaaacaaacaaacaaacaaacaaacaaac
aacaaaaaccaaattcaaggccagcctgggctaaggtctgtatctaaaca
attaaaacagaaaaacaaaataatgagattgtagcctttgcttattatct
caggacttgagaggcacagggaagaagttcagaaattcaaggtcagcctg
ggctacatgaaattttgtttcaaggaaaccgaccccattgtggtgctgga
ctttaattctagcacttgggaagctgaggcagaaaaattgcaagcttgat
actattctgtgatagagagagtgagcagttaagtacttgagaaaaatgtt
caacatcactagtaattaaagaaaaacaagttaaaacctacctttgacca
tgaataatgttttgttattttttgtttgggtattttgagacagttccctg
gctgtcctggaactcactctgtagaccaggctggccttgaatttagagat
ctgcctgcctctgctcttgcttattgagtgctgggattaaaggcttgctc
caccattgtatgactaccatggataaaattttaaagagtttttacattac
atattgacaaggctagagttctataatcctgtactatatgtataaaatgg
cacaactttagaaaagaccagtagtttctttaaacgttagataataccta
atcatatgacccaggcaacttttcctcctaggtatctgtggtggttttgt
atatgcttg
gaattcttatgtatgctgaacagatgaagtgcgtcatatcatctattttt
aaaaatacaacttattagttgtcatttttgtatgtgtttaatcccagata
gattgtgagttacagtacagcctcgcttatactccaagttcttccccttt
tcatcttttctcccttgggctttcagatctccactcccactgtgttaaaa
ttgttgcatagttgaaggagagggtgagcgttttctctgtctgtcagcat
ggcatgctccatccccttgagatggaggagagatggactgaaagagtaga
agctcagaaagagacgatgggagaatgagaaaacagctccgttgtccttg
acactgcctgtctcctgaacacacacagcacggtcaccctcaaagtcaaa
ccatggttcacctcactgcctaaactgtcggttctcagtttcctttcata
ttcagaagactttattttgacatttggattctttattttccttcacagta
cttatataccagtgagttaaaatcataaatccaggcttaaatgtttcctc
ttctcttcagaaggctttcccagtgctcttcaatatttgacttagaccta
aagatatgttaccctttcttaaaactatatttgttgttgttatttatctt
ttaaaaacatggtctcactgagtagcacaaaatgcttttgatctcactaa
atgtgcaagatttgccttaaactcaggtcctcctactttcgcctcctgat
ttctaagatacagctgtgtgctaccatggctggcttggtcttatttaaaa
ttaattaattgggtgttggaagaatgtatcatggtgtgtgtggacttcag
aagcaacttgtggagttgggtctctcctttgtaccatgtaggtcctaggg
attaaacttgggtgttcggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120500488_120501266
seq2: B6Ng01-181H11.b_45_823

seq1  GAATTCAAAATCAGTCTGGGCTATAACAAGTTCAAGGCCACCGGGCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCAGTCTGGGCTATAACAAGTTCAAGGCCACCGGGCAAGT  50

seq1  TGGCACACACCTTTAATCCAGCATTTAGGAGGGAGAGACAGGTGGATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACACCTTTAATCCAGCATTTAGGAGGGAGAGACAGGTGGATCTC  100

seq1  TGTAAATTTGAGCCCTGGTCTACAAAGCTAGTCCAGGACAGCCAGGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTTGAGCCCTGGTCTACAAAGCTAGTCCAGGACAGCCAGGGCTA  150

seq1  TACAGAGAAACCCTGCCCCCCAAAACAAACAAACAAACAAACAAACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAACCCTGCCCCCCAAAACAAACAAACAAACAAACAAACAAAC  200

seq1  AACAAAAACCAAATTCAAGGCCAGCCTGGGCTAAGGTCTGTATCTAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACCAAATTCAAGGCCAGCCTGGGCTAAGGTCTGTATCTAAACA  250

seq1  ATTAAAACAGAAAAACAAAATAATGAGATTGTAGCCTTTGCTTATTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACAGAAAAACAAAATAATGAGATTGTAGCCTTTGCTTATTATCT  300

seq1  CAGGACTTGAGAGGCACAGGGAAGAAGTTCAGAAATTCAAGGTCAGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTGAGAGGCACAGGGAAGAAGTTCAGAAATTCAAGGTCAGCCTG  350

seq1  GGCTACATGAAATTTTGTTTCAAGGAAACCGACCCCATTGTGGTGCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACATGAAATTTTGTTTCAAGGAAACCGACCCCATTGTGGTGCTGGA  400

seq1  CTTTAATTCTAGCACTTGGGAAGCTGAGGCAGAAAAATTGCAAGCTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCTAGCACTTGGGAAGCTGAGGCAGAAAAATTGCAAGCTTGAT  450

seq1  ACTATTCTGTGATAGAGAGAGTGAGCAGTTAAGTACTTGAGAAAAATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTGTGATAGAGAGAGTGAGCAGTTAAGTACTTGAGAAAAATGTT  500

seq1  CAACATCACTAGTAATTAAAGAAAAACAAGTTAAAACCTACCTTTGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCACTAGTAATTAAAGAAAAACAAGTTAAAACCTACCTTTGACCA  550

seq1  TGAATAATGTTTTGTTATTTTTTGTTTGGGTATTTTGAGACAGTTCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATGTTTTGTTATTTTTTGTTTGGGTATTTTGAGACAGTTCCCTG  600

seq1  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAATTTAGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAATTTAGAGAT  650

seq1  CTGCCTGCCTCTGCTCTTGCTTATTGAGTGCTGGGATTAAAGGCTTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTCTGCTCTTGCTTATTGAGTGCTGGGATTAAAGGCTTGCTC  700

seq1  CACCATTGTATGACTACCATGGATAAAATTTTAAAGAGTTTTTACATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTGTATGACTACCATGGATAAAATTTTAAAGAGTTTTTACATTAC  750

seq1  ATATTGACAAGGCTAGAGTTCTATAATCC  779
      |||||||||||||||||||||||||||||
seq2  ATATTGACAAGGCTAGAGTTCTATAATCC  779

seq1: chr2_120615010_120615930
seq2: B6Ng01-181H11.g_66_987 (reverse)

seq1  AGTCCG-ACACCCAAGTTTAATCCCTAGGACCTACATGGTAC-AAGGAGA  48
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTCCGAACACCCAAGTTTAATCCCTAGGACCTACATGGTACAAAGGAGA  50

seq1  GACCCAACTTCCACAAGTTGCTTCTGAAGTCCACACACACCATGATACAT  98
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAC-TCCACAAGTTGCTTCTGAAGTCCACACACACCATGATACAT  99

seq1  TCTTCCAACACCCAATTAATTAATTTTAAATAAGACCAAGCCAGCCATGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAACACCCAATTAATTAATTTTAAATAAGACCAAGCCAGCCATGG  149

seq1  TAGCACACAGCTGTATCTTAGAAATCAGGAGGCGAAAGTAGGAGGACCTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACACAGCTGTATCTTAGAAATCAGGAGGCGAAAGTAGGAGGACCTG  199

seq1  AGTTTAAGGCAAATCTTGCACATTTAGTGAGATCAAAAGCATTTTGTGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGGCAAATCTTGCACATTTAGTGAGATCAAAAGCATTTTGTGCT  249

seq1  ACTCAGTGAGACCATGTTTTTAAAAGATAAATAACAACAACAAATATAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGAGACCATGTTTTTAAAAGATAAATAACAACAACAAATATAGT  299

seq1  TTTAAGAAAGGGTAACATATCTTTAGGTCTAAGTCAAATATTGAAGAGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAAGGGTAACATATCTTTAGGTCTAAGTCAAATATTGAAGAGCA  349

seq1  CTGGGAAAGCCTTCTGAAGAGAAGAGGAAACATTTAAGCCTGGATTTATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGCCTTCTGAAGAGAAGAGGAAACATTTAAGCCTGGATTTATG  399

seq1  ATTTTAACTCACTGGTATATAAGTACTGTGAAGGAAAATAAAGAATCCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACTCACTGGTATATAAGTACTGTGAAGGAAAATAAAGAATCCAA  449

seq1  ATGTCAAAATAAAGTCTTCTGAATATGAAAGGAAACTGAGAACCGACAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAAATAAAGTCTTCTGAATATGAAAGGAAACTGAGAACCGACAGT  499

seq1  TTAGGCAGTGAGGTGAACCATGGTTTGACTTTGAGGGTGACCGTGCTGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAGTGAGGTGAACCATGGTTTGACTTTGAGGGTGACCGTGCTGTG  549

seq1  TGTGTTCAGGAGACAGGCAGTGTCAAGGACAACGGAGCTGTTTTCTCATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAGGAGACAGGCAGTGTCAAGGACAACGGAGCTGTTTTCTCATT  599

seq1  CTCCCATCGTCTCTTTCTGAGCTTCTACTCTTTCAGTCCATCTCTCCTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCGTCTCTTTCTGAGCTTCTACTCTTTCAGTCCATCTCTCCTCC  649

seq1  ATCTCAAGGGGATGGAGCATGCCATGCTGACAGACAGAGAAAACGCTCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAGGGGATGGAGCATGCCATGCTGACAGACAGAGAAAACGCTCAC  699

seq1  CCTCTCCTTCAACTATGCAACAATTTTAACACAGTGGGAGTGGAGATCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTTCAACTATGCAACAATTTTAACACAGTGGGAGTGGAGATCTG  749

seq1  AAAGCCCAAGGGAGAAAAGATGAAAAGGGGAAGAACTTGGAGTATAAGCG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAAGGGAGAAAAGATGAAAAGGGGAAGAACTTGGAGTATAAGCG  799

seq1  AGGCTGTACTGTAACTCACAATCTATCTGGGATTAAACACATACAAAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTACTGTAACTCACAATCTATCTGGGATTAAACACATACAAAAAT  849

seq1  GACAACTAATAAGTTGTATTTTTAAAAATAGATGATATGACGCACTTCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTAATAAGTTGTATTTTTAAAAATAGATGATATGACGCACTTCAT  899

seq1  CTGTTCAGCATACATAAGAATTC  921
      |||||||||||||||||||||||
seq2  CTGTTCAGCATACATAAGAATTC  922