BAC Information

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BAC

Clone NameB6Ng01-181N03
Chromosome2 (Build37)
Map Location 114,333,642 - 114,479,800
singlet/doubletdoublet
Overlap geneAtpbd4
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneLOC100043219, LOC100043222, LOC100043232, LOC100043236, BC052040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181N03.bB6Ng01-181N03.g
ACCGA007876GA007877
length9261,016
definitionB6Ng01-181N03.b B6Ng01-181N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,478,870 - 114,479,800)(114,333,642 - 114,334,656)
sequence
gaattccactttattgctacagtctctttttgttagcctagtgaagcaca
cgtacacatttgttgttaatgccctaggtaactgatgctagttgacagtg
ggtgacagtctaggtaagccagtttctctagtggcaggaaaatgccagat
ctgttgattctgtgccattttaaggaaatgaaaacccaccataatttaat
aaattttacacataaagggaataaaactttaaccatcacgattatttggt
gaagagagataaaaattaaatgtgagccaggaaggcagccatggaactta
gtttaccgaagctcagcagggtagtaaaacatgtgaaactggagagaaga
aagtctcagtggagtgtgttcctcaaaacactcagtggataggaatttag
aggtgctgtttgagaaattatacaattaaaagctgtatattaggaaataa
gaatgcacaaaataaatatacatgtactgtgtatgattgtgtataacatg
gccatatatttaagcttcagtttgataaatctgtgtgcattgtgtaccca
catgcatgtatttgaatttgtgtgtacaacagttgatagggtatgaatgt
atttccaggacaaaatgaaacacattcttttatatcactaagtcaaagac
taaaaaaaactcagaataaaaaaaaaaaaaaaagatgtcctgttgaatgg
aagcttgtagattatctaggcaggctattttaaatttattctgaagcata
gaaacccaaatatattgtgattgcattgtctgcctttggaatcttctgcc
cgatctgggctgcattgtctagtctcaagaagaagcacctaatcttattg
caacttgatatgccaaggctggttggtcctaggaggcctcccttttctgc
aagatgggtggtatgctggatgagct
gaattcatgcctctacttgaacttgtcagtaagaaagatcaatggaaaat
tctgtttccggagctgtccctatcttctttcaaagagaacttcagctgct
tttggaactggtctagagcaagtacttctgaaacaggcaaatcttatttc
taaagtggagacttaaattctttgcctttagtcaattgaaagaaaaagca
gactttgacaagaaaatgtgttttgtatgcctaaggaaaatatgataaaa
tatgaaatagaattaaccgtgaaaaatgaaatcatgaaagtacagtgttg
ctatcccttctctcacattagagattccatgggtcaggcaggaagcagtc
ttattgttttgaggcttgtggggagacacagagtaacatctattctacat
agctcagaagatgcaggcagactgacgtctttcaaatccatcatggttat
ccagtgattgtacttagaatgactcaaaggcagatgtacaatttacaggc
agttccccgctgataaatcccacttgattaatccctcatctctgggatgt
tactggggagagcaaagagtgtctcatgtagctgtgcttcaacatagtga
cgatcacccccaacccagagagcagctacttaatgagtggaccttgtgtt
tcttggttgggcttttactactctgaagggttttttgtgtgtttgttttt
gttttattttacttttttctacagtttcaatctcctcatttattactggt
tggtttaggttatttatctcctcttggtttaacttggcaatttgaatgaa
tctggaaatttctttcatttcttttagattttccaacttaatggagcatt
gatctttaaaaagtattttccttatgtattctgaatctcttttggtgcct
gtgtaatgttttgtatctgtccattcctgattcctgccaattaaggttat
gtctttcttctggttacttgggccaagtagaatgcaaatcttattttacc
tgtctcaaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114478870_114479800
seq2: B6Ng01-181N03.b_43_968 (reverse)

seq1  AGCTCCATCCACCATACCACCCCTTCTTTGCAGAAAAGGGGAGGCCTCCT  50
      |||| |||||| |||||||||| |   |||||||||| ||||||||||||
seq2  AGCT-CATCCAGCATACCACCCAT--CTTGCAGAAAA-GGGAGGCCTCCT  46

seq1  AAGGACCAACCAGCCTTGGCATATCAAGTTGCAATAAGATTAGGTGCTTC  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AGGACCAACCAGCCTTGGCATATCAAGTTGCAATAAGATTAGGTGCTTC  95

seq1  TTCTTGAGACTAGACAATGCAGCCCAGATCGGGCAGAAGATTCCAAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGACTAGACAATGCAGCCCAGATCGGGCAGAAGATTCCAAAGGC  145

seq1  AGACAATGCAATCACAATATATTTGGGTTTCTATGCTTCAGAATAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGCAATCACAATATATTTGGGTTTCTATGCTTCAGAATAAATTT  195

seq1  AAAATAGCCTGCCTAGATAATCTACAAGCTTCCATTCAACAGGACATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCCTGCCTAGATAATCTACAAGCTTCCATTCAACAGGACATCTT  245

seq1  TTTTTTTTTTTTTTTTTTTGAGTTTTTTTTAGTCTTTGACTTAGTGATAT  300
      |||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTATTCTGAGTTTTTTTTAGTCTTTGACTTAGTGATAT  295

seq1  AAAAGAATGTGTTTCATTTTGTCCTGGAAATACATTCATACCCTATCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGTGTTTCATTTTGTCCTGGAAATACATTCATACCCTATCAAC  345

seq1  TGTTGTACACACAAATTCAAATACATGCATGTGGGTACACAATGCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTACACACAAATTCAAATACATGCATGTGGGTACACAATGCACACA  395

seq1  GATTTATCAAACTGAAGCTTAAATATATGGCCATGTTATACACAATCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATCAAACTGAAGCTTAAATATATGGCCATGTTATACACAATCATA  445

seq1  CACAGTACATGTATATTTATTTTGTGCATTCTTATTTCCTAATATACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTACATGTATATTTATTTTGTGCATTCTTATTTCCTAATATACAGC  495

seq1  TTTTAATTGTATAATTTCTCAAACAGCACCTCTAAATTCCTATCCACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGTATAATTTCTCAAACAGCACCTCTAAATTCCTATCCACTGA  545

seq1  GTGTTTTGAGGAACACACTCCACTGAGACTTTCTTCTCTCCAGTTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGAGGAACACACTCCACTGAGACTTTCTTCTCTCCAGTTTCACA  595

seq1  TGTTTTACTACCCTGCTGAGCTTCGGTAAACTAAGTTCCATGGCTGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACTACCCTGCTGAGCTTCGGTAAACTAAGTTCCATGGCTGCCTT  645

seq1  CCTGGCTCACATTTAATTTTTATCTCTCTTCACCAAATAATCGTGATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCACATTTAATTTTTATCTCTCTTCACCAAATAATCGTGATGGT  695

seq1  TAAAGTTTTATTCCCTTTATGTGTAAAATTTATTAAATTATGGTGGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTTATTCCCTTTATGTGTAAAATTTATTAAATTATGGTGGGTTT  745

seq1  TCATTTCCTTAAAATGGCACAGAATCAACAGATCTGGCATTTTCCTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCTTAAAATGGCACAGAATCAACAGATCTGGCATTTTCCTGCCA  795

seq1  CTAGAGAAACTGGCTTACCTAGACTGTCACCCACTGTCAACTAGCATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAACTGGCTTACCTAGACTGTCACCCACTGTCAACTAGCATCAG  845

seq1  TTACCTAGGGCATTAACAACAAATGTGTACGTGTGCTTCACTAGGCTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAGGGCATTAACAACAAATGTGTACGTGTGCTTCACTAGGCTAAC  895

seq1  AAAAAGAGACTGTAGCAATAAAGTGGAATTC  931
      |||||||||||||||||||||||||||||||
seq2  AAAAAGAGACTGTAGCAATAAAGTGGAATTC  926

seq1: chr2_114333642_114334656
seq2: B6Ng01-181N03.g_67_1082

seq1  GAATTCATGCCTCTACTTGAACTTGTCAGTAAGAAAGATCAATGGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCTCTACTTGAACTTGTCAGTAAGAAAGATCAATGGAAAAT  50

seq1  TCTGTTTCCGGAGCTGTCCCTATCTTCTTTCAAAGAGAACTTCAGCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCGGAGCTGTCCCTATCTTCTTTCAAAGAGAACTTCAGCTGCT  100

seq1  TTTGGAACTGGTCTAGAGCAAGTACTTCTGAAACAGGCAAATCTTATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACTGGTCTAGAGCAAGTACTTCTGAAACAGGCAAATCTTATTTC  150

seq1  TAAAGTGGAGACTTAAATTCTTTGCCTTTAGTCAATTGAAAGAAAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGGAGACTTAAATTCTTTGCCTTTAGTCAATTGAAAGAAAAAGCA  200

seq1  GACTTTGACAAGAAAATGTGTTTTGTATGCCTAAGGAAAATATGATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGACAAGAAAATGTGTTTTGTATGCCTAAGGAAAATATGATAAAA  250

seq1  TATGAAATAGAATTAACCGTGAAAAATGAAATCATGAAAGTACAGTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATAGAATTAACCGTGAAAAATGAAATCATGAAAGTACAGTGTTG  300

seq1  CTATCCCTTCTCTCACATTAGAGATTCCATGGGTCAGGCAGGAAGCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCTTCTCTCACATTAGAGATTCCATGGGTCAGGCAGGAAGCAGTC  350

seq1  TTATTGTTTTGAGGCTTGTGGGGAGACACAGAGTAACATCTATTCTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTTTGAGGCTTGTGGGGAGACACAGAGTAACATCTATTCTACAT  400

seq1  AGCTCAGAAGATGCAGGCAGACTGACGTCTTTCAAATCCATCATGGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGAAGATGCAGGCAGACTGACGTCTTTCAAATCCATCATGGTTAT  450

seq1  CCAGTGATTGTACTTAGAATGACTCAAAGGCAGATGTACAATTTACAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATTGTACTTAGAATGACTCAAAGGCAGATGTACAATTTACAGGC  500

seq1  AGTTCCCCGCTGATAAATCCCACTTGATTAATCCCTCATCTCTGGGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCCGCTGATAAATCCCACTTGATTAATCCCTCATCTCTGGGATGT  550

seq1  TACTGGGGAGAGCAAAGAGTGTCTCATGTAGCTGTGCTTCAACATAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGGAGAGCAAAGAGTGTCTCATGTAGCTGTGCTTCAACATAGTGA  600

seq1  CGATCACCCCCAACCCAGAGAGCAGCTACTTAATGAGTGGACCTTGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCACCCCCAACCCAGAGAGCAGCTACTTAATGAGTGGACCTTGTGTT  650

seq1  TCTTGGTTGGGCTTTTACTACTCTGAAGGGTTTTTTGTGTGTTTGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTGGGCTTTTACTACTCTGAAGGGTTTTTTGTGTGTTTGTTTTT  700

seq1  GTTTTATTTTACTTTTTTCTACAGTTTCAATCTCCTCATTTATTACTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTTACTTTTTTCTACAGTTTCAATCTCCTCATTTATTACTGGT  750

seq1  TGGTTTAGGTTATTTATCTCCTCTTGGTTTAACTTTGGCAATTTGAATGA  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGTTTAGGTTATTTATCTCCTCTTGGTTTAAC-TTGGCAATTTGAATGA  799

seq1  ATCTGGAAAATTTCTTTTCATTTCTTTTAGATTTTCCAACTTAATGGAGC  850
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  ATCTGG-AAATTTC-TTTCATTTCTTTTAGATTTTCCAACTTAATGGAGC  847

seq1  ATTGATCTTTAAAAAGTATTTTCCTTATGTATTCTGAATCTC-TTTGGTG  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTGATCTTTAAAAAGTATTTTCCTTATGTATTCTGAATCTCTTTTGGTG  897

seq1  CCTGTGTAATGTTTTGTTATCTGTTCATTCCTGATT-CTGTCAATTAGGG  948
      |||||||||||||||| ||||||| ||||||||||| ||| |||||| ||
seq2  CCTGTGTAATGTTTTG-TATCTGTCCATTCCTGATTCCTGCCAATTAAGG  946

seq1  TTATGTCTTTCTTCTGGTTAACTGGGCCAAG-AGAATGCAAATCTTA-TT  996
      ||||||||||||||||||||  ||||||||| ||||||||||||||| ||
seq2  TTATGTCTTTCTTCTGGTTACTTGGGCCAAGTAGAATGCAAATCTTATTT  996

seq1  TACCT-TCTCAAAAAAAAAA  1015
      ||||| ||||||||||||||
seq2  TACCTGTCTCAAAAAAAAAA  1016