BAC Information

Click to search

BAC

Clone NameB6Ng01-181N20
Chromosome2 (Build37)
Map Location 23,896,891 - 24,030,976
singlet/doubletdoublet
Overlap geneHnmt, Tbpl2, Il1f8
Upstream geneAcbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1
Downstream geneLOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181N20.bB6Ng01-181N20.g
ACCGA007910GA007911
length2301,033
definitionB6Ng01-181N20.b B6Ng01-181N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,030,747 - 24,030,976)(23,896,891 - 23,897,924)
sequence
gaattcttagtcattgcccaatggcctgcatcctacaaactgcaaaagaa
aatgcaagatattatgcttgcatcaaaatgttcaaatttgggagaaaatg
tggaccaaagacaccatgaaagaaaataaaaagacaggctacccagtgct
gagggccagccccagcatggggtgttcttctttcttgttggttcttcttg
aggcagcatggcaggggtgggggttggggg
gaattctcttaaccactgggccatatctctagcaacaaaaatcgtatttt
caaatttttggtcattactaaatcatttattctctttcacgacgttaata
atttttacaaccattttgtataatttgttgcattctgggctttattctac
ctaatagtgctcaagttatttgtaaagtaaggatgaattacatttttgtc
ctatttattatcctctatagaattactggttttgtataaacaataaatgc
tgtgttgtataacaaaaaaaaaaaaaaatcacctaacccaagtgctctca
actgatagcagtaaaattattaccaaaaaattatgagtgagcccctacca
cctgtacataaaataatgggaatacaaataaaaagcttggattttgttct
gtctaattcttgtaatactccctaatacctgcatataataactgaaaaca
cataaatgtcatatatgcaaagcccatagccaggagaacatattaccaat
aacttctttctggagcataagtgttaagttagtagcattgtgaattatta
gcatttctgcttaccaaaaaacactacggatttcttgttttccatgcacc
atctagcatgaaatgacacttatagaaattaagtgatagttggtagtaaa
tccctaccaggtttaattttaaattaaggaagcatcaatattgaaaaatg
gaccaaaaagcaaattctaacagatttacagtaaaaataatgttactatt
ctaaaaataaaaataaaagcaatggttaaagtcaatgtgacatggctatg
aaacactgaaaaacaaaaaggaaacaaacaaggatcaacaaaaatatacc
ctggctgctgttgcttcttataaagaacatataagctcagttggactctg
taaaagttgggctctaaggcttgtccaggattgtcttcttgtgatttctt
ttaatttacataatatttgtttcatacattttctctatcactagaacata
taatttggtagataacagtgcctacagaatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_24030747_24030976
seq2: B6Ng01-181N20.b_43_272 (reverse)

seq1  CCCCCAACCCCCACCCCTGCCATGCTGCCTCAAGAAGAACCAACAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACCCCCACCCCTGCCATGCTGCCTCAAGAAGAACCAACAAGAAA  50

seq1  GAAGAACACCCCATGCTGGGGCTGGCCCTCAGCACTGGGTAGCCTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACACCCCATGCTGGGGCTGGCCCTCAGCACTGGGTAGCCTGTCTT  100

seq1  TTTATTTTCTTTCATGGTGTCTTTGGTCCACATTTTCTCCCAAATTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCTTTCATGGTGTCTTTGGTCCACATTTTCTCCCAAATTTGAA  150

seq1  CATTTTGATGCAAGCATAATATCTTGCATTTTCTTTTGCAGTTTGTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGATGCAAGCATAATATCTTGCATTTTCTTTTGCAGTTTGTAGGA  200

seq1  TGCAGGCCATTGGGCAATGACTAAGAATTC  230
      ||||||||||||||||||||||||||||||
seq2  TGCAGGCCATTGGGCAATGACTAAGAATTC  230

seq1: chr2_23896891_23897924
seq2: B6Ng01-181N20.g_67_1099

seq1  GAATTCTCTTAACCACTGGGCCATATCTCTAGCAACAAAAATCGTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAACCACTGGGCCATATCTCTAGCAACAAAAATCGTATTTT  50

seq1  CAAATTTTTGGTCATTACTAAATCATTTATTCTCTTTCACGACGTTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTTGGTCATTACTAAATCATTTATTCTCTTTCACGACGTTAATA  100

seq1  ATTTTTACAACCATTTTGTATAATTTGTTGCATTCTGGGCTTTATTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACAACCATTTTGTATAATTTGTTGCATTCTGGGCTTTATTCTAC  150

seq1  CTAATAGTGCTCAAGTTATTTGTAAAGTAAGGATGAATTACATTTTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGTGCTCAAGTTATTTGTAAAGTAAGGATGAATTACATTTTTGTC  200

seq1  CTATTTATTATCCTCTATAGAATTACTGGTTTTGTATAAACAATAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATTATCCTCTATAGAATTACTGGTTTTGTATAAACAATAAATGC  250

seq1  TGTGTTGTATAACAAAAAAAAAAAAAAATCACCTAACCCAAGTGCTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGTATAACAAAAAAAAAAAAAAATCACCTAACCCAAGTGCTCTCA  300

seq1  ACTGATAGCAGTAAAATTATTACCAAAAAATTATGAGTGAGCCCCTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAGCAGTAAAATTATTACCAAAAAATTATGAGTGAGCCCCTACCA  350

seq1  CCTGTACATAAAATAATGGGAATACAAATAAAAAGCTTGGATTTTGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACATAAAATAATGGGAATACAAATAAAAAGCTTGGATTTTGTTCT  400

seq1  GTCTAATTCTTGTAATACTCCCTAATACCTGCATATAATAACTGAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATTCTTGTAATACTCCCTAATACCTGCATATAATAACTGAAAACA  450

seq1  CATAAATGTCATATATGCAAAGCCCATAGCCAGGAGAACATATTACCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATGTCATATATGCAAAGCCCATAGCCAGGAGAACATATTACCAAT  500

seq1  AACTTCTTTCTGGAGCATAAGTGTTAAGTTAGTAGCATTGTGAATTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTTCTGGAGCATAAGTGTTAAGTTAGTAGCATTGTGAATTATTA  550

seq1  GCATTTCTGCTTACCAAAAAACACTACGGATTTCTTGTTTTCCATGCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTGCTTACCAAAAAACACTACGGATTTCTTGTTTTCCATGCACC  600

seq1  ATCTAGCATGAAATGACACTTATAGAAATTAAGTGATAGTTGGTAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCATGAAATGACACTTATAGAAATTAAGTGATAGTTGGTAGTAAA  650

seq1  TCCCTACCAGGTTTAATTTTAAATTAAGGAAGCATCAATATTGAAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACCAGGTTTAATTTTAAATTAAGGAAGCATCAATATTGAAAAATG  700

seq1  GACCAAAAAGCAAATTCTAACAGATTTACAGTAAAAATAATGTTACTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAAAGCAAATTCTAACAGATTTACAGTAAAAATAATGTTACTATT  750

seq1  CTAAAAATAAAAATAAAAGCAATGGTTAAAGTCAATGTGACATGGCTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATAAAAATAAAAGCAATGGTTAAAGTCAATGTGACATGGCTATG  800

seq1  AAACACTGAAAAACAAAAAGGAAACAAACAAGGATCAACAAAAATATA-C  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAACACTGAAAAACAAAAAGGAAACAAACAAGGATCAACAAAAATATACC  850

seq1  CTGGCTGCTGTTGCTTCTTATTAAAGAACATATAAAGCTCAGTTGGACTC  899
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  CTGGCTGCTGTTGCTTCTTA-TAAAGAACATAT-AAGCTCAGTTGGACTC  898

seq1  TGTAAAAGTTGGGCTCTAAGGCTTTGTCCAGGATTTGTCTTCTTTGTGAT  949
      |||||||||||||||||||||| |||||||||| |||||||| |||||| 
seq2  TGTAAAAGTTGGGCTCTAAGGC-TTGTCCAGGA-TTGTCTTC-TTGTGA-  944

seq1  TTTCTTTTTATTTACATAATATTTGTTTCATACA-TTTCTCTATCACTAG  998
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TTTCTTTTAATTTACATAATATTTGTTTCATACATTTTCTCTATCACTAG  994

seq1  AACATATAATTT-GTAGATAACAGTG-CTACAG-ATATG  1034
      |||||||||||| ||||||||||||| |||||| |||||
seq2  AACATATAATTTGGTAGATAACAGTGCCTACAGAATATG  1033