BAC Information

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BAC

Clone NameB6Ng01-181P19
Chromosome2 (Build37)
Map Location 84,323,586 - 84,482,657
singlet/doubletdoublet
Overlap geneLOC672763, Ctnnd1
Upstream geneZc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi
Downstream gene2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181P19.bB6Ng01-181P19.g
ACCGA008002GA008003
length877853
definitionB6Ng01-181P19.b B6Ng01-181P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,323,586 - 84,324,458)(84,481,809 - 84,482,657)
sequence
gaattcagcggcaaggttgcctcggggcaggagtgaaaacagaacaaacc
ctagctccaagttgggaagatgggagagatgattggggagttacataaat
aagatcggtttaaataacaaaccctgtgttatgaccaaaataaggatata
atttcgtggtagtgtgtttattctctctgagcctcatacagggtaacctg
aagggtggatgagtcaaagaccatgaatctagatcctgttcactttcctg
cttcctcggtacagggaaggctgactctcataataaagtgtgagaggtaa
gatgtctcttccatgctgaagtgttgaaaaccctgtgggctgagccccct
tggggggggtggtcacatatcagatagtctgcatatcaaatatttatatg
accactcataacagtagtaaaattacaattattatgtagcaactaagtaa
ttttataatgggggggggcagtacagcatgaggaactgtatacaaggtgg
cagcattaggaagctgagaaccactatggctggagtgattcttctgcctc
acccttgtctgccacagagcatttattagcccaaacccctccacgaatac
acatgagcgagacacagaacgtggctgtgtgaagagagatcgacgatctg
agtgtttattacagcatagttgagactgtctcaatacagcaacaggaaag
aaataaacagaaaagcgtgtttgatgataatgattctaatgtgataggat
tcttaggccaaaaggatattaaggtttataatatttatttttatactcac
taaaggtttgctccctcaaaatgaggtaatcacacatgacatcttatgta
tttaagtgataaactcaaatttttatt
gaattctgtaacctttctgctcttctttcctctgctggctttgcaaacta
ggacaccgttgggtacttgagcacctaccctgctgaaggtcagccagagg
aggaggaggtacgactgtaagtgtatagaagtccctagtcacagatagac
cttaggatcacagttagaaaaaaaaaaagtagagaacctggtatgacaca
tgtctgtaatcccagtattttgaggaagctgaggcagaagattgggagtt
tgaggccagcctatgctaaatggtggaccttgccaaaaataccgataaat
aggactggttagatggctcaatgggtaagacgcttgctgccaaacttgat
gacttctgcatgcttgccttacgacataggttcatacacatatacatgca
tatgcaaaattactgtaaaataataaaagggagctagccacggtgcatga
atggagaaatggagaatggagggccaggaattaccttaccattggtaagt
ggtgagtttagtgggacacatgagaccttgtctcaaaaacagcagacctg
gaaccaactaaacaaggaagtatttaaataaaaacaaaatgaagttggtt
ttactttttttttttaatttaactgtattcatttgagcatgagaaacatc
tttacttaaaaagaaggcaggtgtggtggtatccatgcagctctagcacc
tgaggctaatgtgggacgattaggagatgggaactagctaggctagatag
atagcaagactctttttcaaaagcaaaacagaaaagaccaaaataaaaca
aagaaaagacaaaccttgagggctgaggatgaatgtagctcagtagtaga
gca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84323586_84324458
seq2: B6Ng01-181P19.b_47_922

seq1  GAATTCAGCGGCAAGGTTGCCTCGGGGCAGGAGTGAAAACAGAACAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCGGCAAGGTTGCCTCGGGGCAGGAGTGAAAACAGAACAAACC  50

seq1  CTAGCTCCAAGTTGGGAAGATGGGAGAGATGATTGGGGAGTTACATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCAAGTTGGGAAGATGGGAGAGATGATTGGGGAGTTACATAAAT  100

seq1  AAGATCGGTTTAAATAACAAACCCTGTGTTATGACCAAAATAAGGATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCGGTTTAAATAACAAACCCTGTGTTATGACCAAAATAAGGATATA  150

seq1  ATTTCGTGGTAGTGTGTTTATTCTCTCTGAGCCTCATACAGGGTAACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTGGTAGTGTGTTTATTCTCTCTGAGCCTCATACAGGGTAACCTG  200

seq1  AAGGGTGGATGAGTCAAAGACCATGAATCTAGATCCTGTTCACTTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGATGAGTCAAAGACCATGAATCTAGATCCTGTTCACTTTCCTG  250

seq1  CTTCCTCGGTACAGGGAAGGCTGACTCTCATAATAAAGTGTGAGAGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCGGTACAGGGAAGGCTGACTCTCATAATAAAGTGTGAGAGGTAA  300

seq1  GATGTCTCTTCCATGCTGAAGTGTTGAAAACCCTGTGGGCTGAGCCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTCTTCCATGCTGAAGTGTTGAAAACCCTGTGGGCTGAGCCCCCT  350

seq1  TGGGGGGGGTGGTCACATATCAGATAGTCTGCATATCAAATATTTATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGGTGGTCACATATCAGATAGTCTGCATATCAAATATTTATATG  400

seq1  ACCACTCATAACAGTAGTAAAATTACAATTATTATGTAGCAACTAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCATAACAGTAGTAAAATTACAATTATTATGTAGCAACTAAGTAA  450

seq1  TTTTATAATGGGGGGGGGCAGTACAGCATGAGGAACTGTATACAAGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATGGGGGGGGGCAGTACAGCATGAGGAACTGTATACAAGGTGG  500

seq1  CAGCATTAGGAAGCTGAGAACCACTATGGCTGGAGTGATTCTTCTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTAGGAAGCTGAGAACCACTATGGCTGGAGTGATTCTTCTGCCTC  550

seq1  ACCCTTGTCTGCCACAGAGCATTTATTAGCCCAAACCCCTCCACGAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGTCTGCCACAGAGCATTTATTAGCCCAAACCCCTCCACGAATAC  600

seq1  ACATGAGCGAGACACAGAACGTGGCTGTGTGAAGAGAGATCGACGATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGCGAGACACAGAACGTGGCTGTGTGAAGAGAGATCGACGATCTG  650

seq1  AGTG-TTATTACAGCATAGTTGAGACTGTCTCAATACAGCAACAGGAAAG  699
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTATTACAGCATAGTTGAGACTGTCTCAATACAGCAACAGGAAAG  700

seq1  AAATAAAACAG-AAAGCGTGTTTGATGATAATGA-TCTAATGTGATAGGA  747
      |||| |||||| |||||||||||||||||||||| |||||||||||||||
seq2  AAAT-AAACAGAAAAGCGTGTTTGATGATAATGATTCTAATGTGATAGGA  749

seq1  TTCATAGGCCAAAAAGGATATTAAGTTTTATAATATT--ATTTTATACTC  795
      ||| |||||| |||||||||||||| |||||||||||   ||||||||||
seq2  TTCTTAGGCC-AAAAGGATATTAAGGTTTATAATATTTATTTTTATACTC  798

seq1  ACTAAAGGTTTGCTCCATCAAAATGAGGT-ATCACACATGACATCTTATG  844
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACTAAAGGTTTGCTCCCTCAAAATGAGGTAATCACACATGACATCTTATG  848

seq1  AATTTAAGTGTATAAACTCAAATTTTTAT  873
       ||||||||| ||||||||||||||||||
seq2  TATTTAAGTG-ATAAACTCAAATTTTTAT  876

seq1: chr2_84481809_84482657
seq2: B6Ng01-181P19.g_65_917 (reverse)

seq1  TGCTCTACTACTGAGCTACATTCATCCTCAGCCCTCAGGTTTTGTCTTTT  50
      ||||||||||||||||||||||||||||||||||||| | |||||| |||
seq2  TGCTCTACTACTGAGCTACATTCATCCTCAGCCCTCAAGGTTTGTC-TTT  49

seq1  TCTTTGTTTTATTTTGGTCTTTTCTGTTTTGCTTTTG-GAAAGAGTCTTG  99
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  TCTTTGTTTTATTTTGGTCTTTTCTGTTTTGCTTTTGAAAAAGAGTCTTG  99

seq1  CTATCTATCTAGCCTAGCTAGTTCCCATCTCCT-ATCGTCCCACATTAGC  148
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTATCTATCTAGCCTAGCTAGTTCCCATCTCCTAATCGTCCCACATTAGC  149

seq1  CTCAGGTGCTAGAGCTGCATGGATACCACCACACCTGCCTTC-TTTTAAG  197
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCAGGTGCTAGAGCTGCATGGATACCACCACACCTGCCTTCTTTTTAAG  199

seq1  TAAAGATGTTTCTCATGCTC-AATGAATACAGTTAAATTAAAAAAAAAAA  246
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAAAGATGTTTCTCATGCTCAAATGAATACAGTTAAATTAAAAAAAAAAA  249

seq1  GT-AAACCAACTTCATTTTGTTTTTATTTAAATACTTCCTTGTTTAGTTG  295
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACCAACTTCATTTTGTTTTTATTTAAATACTTCCTTGTTTAGTTG  299

seq1  GTTCCAGGTCTGCTGTTTTTGAGACAAGGTCTCATGTGTCCCACTAAACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGTCTGCTGTTTTTGAGACAAGGTCTCATGTGTCCCACTAAACT  349

seq1  CACCACTTACCAATGGTAAGGTAATTCCTGGCCCTCCATTCTCCATTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTTACCAATGGTAAGGTAATTCCTGGCCCTCCATTCTCCATTTCT  399

seq1  CCATTCATGCACCGTGGCTAGCTCCCTTTTATTATTTTACAGTAATTTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATGCACCGTGGCTAGCTCCCTTTTATTATTTTACAGTAATTTTG  449

seq1  CATATGCATGTATATGTGTATGAACCTATGTCGTAAGGCAAGCATGCAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCATGTATATGTGTATGAACCTATGTCGTAAGGCAAGCATGCAGA  499

seq1  AGTCATCAAGTTTGGCAGCAAGCGTCTTACCCATTGAGCCATCTAACCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCAAGTTTGGCAGCAAGCGTCTTACCCATTGAGCCATCTAACCAG  549

seq1  TCCTATTTATCGGTATTTTTGGCAAGGTCCACCATTTAGCATAGGCTGGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTATCGGTATTTTTGGCAAGGTCCACCATTTAGCATAGGCTGGC  599

seq1  CTCAAACTCCCAATCTTCTGCCTCAGCTTCCTCAAAATACTGGGATTACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCCCAATCTTCTGCCTCAGCTTCCTCAAAATACTGGGATTACA  649

seq1  GACATGTGTCATACCAGGTTCTCTACTTTTTTTTTTTCTAACTGTGATCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTGTCATACCAGGTTCTCTACTTTTTTTTTTTCTAACTGTGATCC  699

seq1  TAAGGTCTATCTGTGACTAGGGACTTCTATACACTTACAGTCGTACCTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCTATCTGTGACTAGGGACTTCTATACACTTACAGTCGTACCTCC  749

seq1  TCCTCCTCTGGCTGACCTTCAGCAGGGTAGGTGCTCAAGTACCCAACGGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTGGCTGACCTTCAGCAGGGTAGGTGCTCAAGTACCCAACGGT  799

seq1  GTCCTAGTTTGCAAAGCCAGCAGAGGAAAGAAGAGCAGAAAGGTTACAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGTTTGCAAAGCCAGCAGAGGAAAGAAGAGCAGAAAGGTTACAGA  849

seq1  ATTC  849
      ||||
seq2  ATTC  853