BAC Information

Click to search

BAC

Clone NameB6Ng01-182G04
Chromosome2 (Build37)
Map Location 121,782,012 - 121,887,792
singlet/doubletdoublet
Overlap geneCtdspl2, Eif3s1
Upstream geneUbr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3
Downstream gene4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182G04.bB6Ng01-182G04.g
ACCGA008290GA008291
length828710
definitionB6Ng01-182G04.b B6Ng01-182G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,782,012 - 121,782,833)(121,887,084 - 121,887,792)
sequence
ctctggtgagttccctaaggcggcagaaacttcagcctcttcacggtagt
aaaagttggtttcccctcccccgctgccgcccaggcctcccgcattcctt
ccctcccgcctctccggatcggggcgggcgggggaggagggagccagagc
gcctgcgcagggaggccgctttccatccgggtccctgtccgtgcggtgca
gcaggtcggtaggcgggaaatggcgactggctgaaggagctggttctgtt
gctgctgagggataagcgggaaagacaccacctattgcgcagtcgggacc
atcgccggagcccgaagacacttttctgtcgtcacagtgaaggtaattcc
cttggtccagacgctgccgttgctccgaagctcagtcctctctcagggcc
gtctgccgggatctcctccccttctctagccgagccctcagcggttccag
caacgtccgtaggcatgcactgttggcgccttgtacgtccactgtcgtgg
aagctgctctggcttggactttccccagggaacggccagggagctcactt
cccgccagcttcagctcttaggctgcggcctgtgttgtgatttctggggt
tagatttcactttgctacccacccccaaaccccatctcacgttcccagtc
tctgaccccgtggacccgatagctaattaagttagattgcctttttcgaa
ccttcttgtgggcccacgtaatgtttttggtatttcatttcttgtagggt
gcattagggggggcgttgctctctctacttgagctctttacagacatccc
tttgagaatctggaaagaggttcttgga
gaattcactgtatgaatgacagtgctcttgaatttacagagtgctggggt
tagaggcgtgtgccaccacgcctagctatgtgaagttagaaatggagccc
agggcttcatgcataccaagtaagcactcaactgcatgaactagatctgc
tcagtgtaccaaatgacagagtccactcatataggctgccaaagtacatt
caatgctgtcttctcaaagctctcagaatgcctttttgttattttcgcat
gcccagcaagcacgtgcatgttcctgtcaggatgcaccaacaggctaaga
ttattctactgagtggttgtaccatagtttaacgaagctttacgacagac
agggatggtggctcacaactgtaatctaagcactagggaagctaaagcag
gagaatcacgttgaacttaaagctaaaaatgagatgctcagagacaaaag
gggaaggacagcaagtgttccatactcacttttactttctcctggtacca
agaagtaaagaagcatgtgtcccatttcagacagtgctggggctgaacct
aaggccttagaaatgctgggcaagcactccacactgagctgtgagactaa
gagtgagactgggggagcgatctgaaggagaaaggggagtgggggtggga
gcaggatctctgtcttctcaaagttggatccaaggtgcctgagagatgtt
tgggagataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_121782012_121782833
seq2: B6Ng01-182G04.b_48_875

seq1  CTCTGGTGAGTTCCCTAAGGCGGCAGAAACTTCAGCCTCTTCACGGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGAGTTCCCTAAGGCGGCAGAAACTTCAGCCTCTTCACGGTAGT  50

seq1  AAAAGTTGGTTTCCCCTCCCCCGCTGCCGCCCAGGCCTCCCGCATTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGGTTTCCCCTCCCCCGCTGCCGCCCAGGCCTCCCGCATTCCTT  100

seq1  CCCTCCCGCCTCTCCGGATCGGGGCGGGCGGGGGAGGAGGGAGCCAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCGCCTCTCCGGATCGGGGCGGGCGGGGGAGGAGGGAGCCAGAGC  150

seq1  GCCTGCGCAGGGAGGCCGCTTTCCATCCGGGTCCCTGTCCGTGCGGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGCAGGGAGGCCGCTTTCCATCCGGGTCCCTGTCCGTGCGGTGCA  200

seq1  GCAGGTCGGTAGGCGGGAAATGGCGACTGGCTGAAGGAGCTGGTTCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCGGTAGGCGGGAAATGGCGACTGGCTGAAGGAGCTGGTTCTGTT  250

seq1  GCTGCTGAGGGATAAGCGGGAAAGACACCACCTATTGCGCAGTCGGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAGGGATAAGCGGGAAAGACACCACCTATTGCGCAGTCGGGACC  300

seq1  ATCGCCGGAGCCCGAAGACACTTTTCTGTCGTCACAGTGAAGGTAATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCGGAGCCCGAAGACACTTTTCTGTCGTCACAGTGAAGGTAATTCC  350

seq1  CTTGGTCCAGACGCTGCCGTTGCTCCGAAGCTCAGTCCTCTCTCAGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCAGACGCTGCCGTTGCTCCGAAGCTCAGTCCTCTCTCAGGGCC  400

seq1  GTCTGCCGGGATCTCCTCCCCTTCTCTAGCCGAGCCCTCAGCGGTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCGGGATCTCCTCCCCTTCTCTAGCCGAGCCCTCAGCGGTTCCAG  450

seq1  CAACGTCCGTAGGCATGCACTGTTGGCGCCTTGTACGTCCACTGTCGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTCCGTAGGCATGCACTGTTGGCGCCTTGTACGTCCACTGTCGTGG  500

seq1  AAGCTGCTCTGGCTTGGACTTTCCCCAGGGAACGGCCAGGGAGCTCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTCTGGCTTGGACTTTCCCCAGGGAACGGCCAGGGAGCTCACTT  550

seq1  CCCGCCAGCTTCAGCTCTTAGGCTGCGGCCTGTGTTGTGATTTCTGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCAGCTTCAGCTCTTAGGCTGCGGCCTGTGTTGTGATTTCTGGGGT  600

seq1  TAGATTTCACTTTGCTACCCACCCCC-AACCCCATCTCACGTTCCCAGTC  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGATTTCACTTTGCTACCCACCCCCAAACCCCATCTCACGTTCCCAGTC  650

seq1  TCTGACCCCGTGGACCCGATAGCTAATTAAGTTAGATTGCC-TTTTCGAA  698
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTGACCCCGTGGACCCGATAGCTAATTAAGTTAGATTGCCTTTTTCGAA  700

seq1  CCTTCTTGTGGGCCCACGTAATGTTTTTGGTATTTCA-TTCTTGTAGGGT  747
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTTCTTGTGGGCCCACGTAATGTTTTTGGTATTTCATTTCTTGTAGGGT  750

seq1  GCATTA-GGGGGGCGTTGCTCTCTCTACTTGAGCTC-TTACAGACAT-CC  794
      |||||| ||||||||||||||||||||||||||||| |||||||||| ||
seq2  GCATTAGGGGGGGCGTTGCTCTCTCTACTTGAGCTCTTTACAGACATCCC  800

seq1  TTTGAGAATCTGGAAAGAGGTTCTTGGA  822
      ||||||||||||||||||||||||||||
seq2  TTTGAGAATCTGGAAAGAGGTTCTTGGA  828

seq1: chr2_121887084_121887792
seq2: B6Ng01-182G04.g_60_769 (reverse)

seq1  TTATCT-CCAAACATCTCTCAGGCACCTTGGTTCCTACTCTGAGAAGACA  49
      |||||| |||||||||||||||||||||||| ||| ||| ||||||||||
seq2  TTATCTCCCAAACATCTCTCAGGCACCTTGGATCCAACTTTGAGAAGACA  50

seq1  GAGCTCCTGCTCCCACCCCCACTCCCCTTTCTCCTTCAGATCGCTCCCCC  99
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTGCTCCCACCCCCACTCCCCTTTCTCCTTCAGATCGCTCCCCC  100

seq1  AGTCTCACTCTTAGTCTCACAGCTCAGTGTGGAGTGCTTGCCCAGCATTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACTCTTAGTCTCACAGCTCAGTGTGGAGTGCTTGCCCAGCATTT  150

seq1  CTAAGGCCTTAGGTTCAGCCCCAGCACTGTCTGAAATGGGACACATGCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCCTTAGGTTCAGCCCCAGCACTGTCTGAAATGGGACACATGCTT  200

seq1  CTTTACTTCTTGGTACCAGGAGAAAGTAAAAGTGAGTATGGAACACTTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTCTTGGTACCAGGAGAAAGTAAAAGTGAGTATGGAACACTTGC  250

seq1  TGTCCTTCCCCTTTTGTCTCTGAGCATCTCATTTTTAGCTTTAAGTTCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCCCCTTTTGTCTCTGAGCATCTCATTTTTAGCTTTAAGTTCAA  300

seq1  CGTGATTCTCCTGCTTTAGCTTCCCTAGTGCTTAGATTACAGTTGTGAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATTCTCCTGCTTTAGCTTCCCTAGTGCTTAGATTACAGTTGTGAGC  350

seq1  CACCATCCCTGTCTGTCGTAAAGCTTCGTTAAACTATGGTACAACCACTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCCTGTCTGTCGTAAAGCTTCGTTAAACTATGGTACAACCACTC  400

seq1  AGTAGAATAATCTTAGCCTGTTGGTGCATCCTGACAGGAACATGCACGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAATAATCTTAGCCTGTTGGTGCATCCTGACAGGAACATGCACGTG  450

seq1  CTTGCTGGGCATGCGAAAATAACAAAAAGGCATTCTGAGAGCTTTGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGGCATGCGAAAATAACAAAAAGGCATTCTGAGAGCTTTGAGAA  500

seq1  GACAGCATTGAATGTACTTTGGCAGCCTATATGAGTGGACTCTGTCATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATTGAATGTACTTTGGCAGCCTATATGAGTGGACTCTGTCATTT  550

seq1  GGTACACTGAGCAGATCTAGTTCATGCAGTTGAGTGCTTACTTGGTATGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACTGAGCAGATCTAGTTCATGCAGTTGAGTGCTTACTTGGTATGC  600

seq1  ATGAAGCCCTGGGCTCCATTTCTAACTTCACATAGCTAGGCGTGGTGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCCTGGGCTCCATTTCTAACTTCACATAGCTAGGCGTGGTGGCA  650

seq1  CACGCCTCTAACCCCAGCACTCTGTAAATTCAAGAGCACTGTCATTCATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTCTAACCCCAGCACTCTGTAAATTCAAGAGCACTGTCATTCATA  700

seq1  CAGTGAATTC  709
      ||||||||||
seq2  CAGTGAATTC  710