BAC Information

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BAC

Clone NameB6Ng01-183O19
Chromosome2 (Build37)
Map Location 75,074,234 - 75,248,164
singlet/doubletdoublet
Overlap genenone
Upstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
Downstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183O19.bB6Ng01-183O19.g
ACCGA009429GA009430
length1,1711,095
definitionB6Ng01-183O19.b B6Ng01-183O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,074,234 - 75,075,403)(75,247,074 - 75,248,164)
sequence
gaattctatttcggtttccaaataaggtgatatatgtaaaccacctatcc
cattgcttggcacatggtagccactaggtaaatgtaatattgtttgactt
ccccacccagggactaaattacaaaacccacaaaggaccaaaatccaaga
actgacttatgatctgagaaagcctcttttaaaatatcttgggcttcatt
gcttaaattaattccaaactttttaaagctattaggaggcaatggatgat
ttgactcagctctgtaacatgaggctgtgtaattaaacatatatatcctg
aaattaattttacattcacttttataacacagttcacttatatagaataa
cacatggctcttgattaaacagcagactgccattcaatcaaacagctcaa
gaaagaccataaaacgtgaaaatgcagtatcagcatcaaaatgcagttgt
gggattttaatattcacttccttactcttacctgggtaacataaaaatgg
atgagaaaatattaagaaaatgtgagcgttaactagatcacatttctgct
taaatgttatggggtcatctagatttattgtaaataagacaagagaaatt
aagagatttgtctttcaaagtaagattgttagggccgagataattttggt
ttaaaaatttcaattatgaaaataaaaaaaaaccttttacaggcatttga
gtttattattttccatatttcttcttttatcttagaaataaaatctacgg
aactttatgatagaaacattttcagaatctcaactacacataaccacatt
ctcgcagttaggagagtggggaaaagactgtctaaagatccaaatgataa
ccaatttcaaagctccaatctaatttggaaaagttctagtgggtaggctt
cagatagcttaattattactaagccgtgtaagcaataatggccccttacc
ctatgaacactgcttaaattatagtcccaatagcttacacagttacctgg
tgtcatttcactaatactattaaaggactaatactattagttcactatta
aagcacagccatcaggctatttaataagctgtccttttatgactctcaat
catccttccactaaggtgtatccttcctaacaatttctgaagtgctactt
ttgtctcttatatgcatggaa

gaattctaaggagcaacaaatccagaaggaatgagccttctatgtcttgt
taagtcttccagacagcggagtctgaggagcgagtgaagctgcccaagag
gattattgttgagcggtatgaaggctcagggcagtggctatcaggaagat
ttacatggaaactaatagagcttgctcagttatttctgctggctagactt
aaaccaggacgaagctgagcggaaacctaacgttctgggcctccacacat
gcttcatgctttgtgtagttcttttctaagttcagaaattcagtgttttg
gggaaaggaacgttaagaggaaagcagaggcccataggcctcccgctcat
tcatctcttgggaagccgagacagtttcttgttttaattgttttgtttaa
ctatgagtctgaaacctttgtctacttggtggcactcgatatggataaat
tgacaccttgtttggtcagcggtgcccatgcatccttccacgtgtcttct
cctttgtaaagttaggaactgggtccagatctctgttctgtcttcctcat
tctgacagactctctttctttagttcttacattatctatccctttccaca
agtctgttatttgtttgcaccctcagaatgtcccgccctcaacctgaagt
ctccatccctattcccactttgccagtggctttccaatctccattgtttc
tttagtgaaaatttatgtattggctccttaacactttattaactgttggg
aggcaaattttctaaatgaaacatttagtgcctctgtatgagtttccatg
atgtcttgggctgggattaaagttgaagacttgttaatcactctatttcc
ttctgatttcagttctaacactctgtcaagacagtaggacagaagttgtc
aatgtcctccacataacaaaaatcaaggcctcttcctgggcctatgtgtt
agagccctgaattagacactgttaactttccaacttcctgtgacatgatc
atcttttcctagatttcttttgattttcttagacccatttctcacgttcc
gatctgtgccaatctagacccccaatttggagcttctagaatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75074234_75075403
seq2: B6Ng01-183O19.b_45_1215

seq1  GAATTCTATTTCGGTTTCCAAATAAGGTGATATATGTAAACCACCTATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTCGGTTTCCAAATAAGGTGATATATGTAAACCACCTATCC  50

seq1  CATTGCTTGGCACATGGTAGCCACTAGGTAAATGTAATATTGTTTGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTGGCACATGGTAGCCACTAGGTAAATGTAATATTGTTTGACTT  100

seq1  CCCCACCCAGGGACTAAATTACAAAACCCACAAAGGACCAAAATCCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCAGGGACTAAATTACAAAACCCACAAAGGACCAAAATCCAAGA  150

seq1  ACTGACTTATGATCTGAGAAAGCCTCTTTTAAAATATCTTGGGCTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTATGATCTGAGAAAGCCTCTTTTAAAATATCTTGGGCTTCATT  200

seq1  GCTTAAATTAATTCCAAACTTTTTAAAGCTATTAGGAGGCAATGGATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAATTAATTCCAAACTTTTTAAAGCTATTAGGAGGCAATGGATGAT  250

seq1  TTGACTCAGCTCTGTAACATGAGGCTGTGTAATTAAACATATATATCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCAGCTCTGTAACATGAGGCTGTGTAATTAAACATATATATCCTG  300

seq1  AAATTAATTTTACATTCACTTTTATAACACAGTTCACTTATATAGAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTTTACATTCACTTTTATAACACAGTTCACTTATATAGAATAA  350

seq1  CACATGGCTCTTGATTAAACAGCAGACTGCCATTCAATCAAACAGCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCTCTTGATTAAACAGCAGACTGCCATTCAATCAAACAGCTCAA  400

seq1  GAAAGACCATAAAACGTGAAAATGCAGTATCAGCATCAAAATGCAGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACCATAAAACGTGAAAATGCAGTATCAGCATCAAAATGCAGTTGT  450

seq1  GGGATTTTAATATTCACTTCCTTACTCTTACCTGGGTAACATAAAAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTAATATTCACTTCCTTACTCTTACCTGGGTAACATAAAAATGG  500

seq1  ATGAGAAAATATTAAGAAAATGTGAGCGTTAACTAGATCACATTTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAATATTAAGAAAATGTGAGCGTTAACTAGATCACATTTCTGCT  550

seq1  TAAATGTTATGGGGTCATCTAGATTTATTGTAAATAAGACAAGAGAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTATGGGGTCATCTAGATTTATTGTAAATAAGACAAGAGAAATT  600

seq1  AAGAGATTTGTCTTTCAAAGTAAGATTGTTAGGGCCGAGATAATTTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTTGTCTTTCAAAGTAAGATTGTTAGGGCCGAGATAATTTTGGT  650

seq1  TTAAAAATTTCAATTATGAAAATAAAAAAAAACCTTTTACAGGCATTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTTCAATTATGAAAATAAAAAAAAACCTTTTACAGGCATTTGA  700

seq1  GTTTATTATTTTCCATATTTCTTCTTTTATCTTAGAAATAAAATCTACGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTATTTTCCATATTTCTTCTTTTATCTTAGAAATAAAATCTACGG  750

seq1  AACTTTATGATAGAAACATTTTCAGAATCTCAACTACACATAACCACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATGATAGAAACATTTTCAGAATCTCAACTACACATAACCACATT  800

seq1  CTCGCAGTTAGGAGAGTGGGGAAAAGACTGTCTAAAGATCCAAATGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCAGTTAGGAGAGTGGGGAAAAGACTGTCTAAAGATCCAAATGATAA  850

seq1  CCAATTTCAAAGCTCCAATCTAATTTGGAAAAGTTCTAGTGGGTAGGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCAAAGCTCCAATCTAATTTGGAAAAGTTCTAGTGGGTAGGCTT  900

seq1  CAGATAGCTTAATTATTACTAAGCCGTGTAAGCAATAATGG-CCCTTACC  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGATAGCTTAATTATTACTAAGCCGTGTAAGCAATAATGGCCCCTTACC  950

seq1  CTATGAACACTGCTTTAAATTATAGTCCCAATAGCTTACAACAGTTACCT  999
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  CTATGAACACTGC-TTAAATTATAGTCCCAATAGCTTAC-ACAGTTACCT  998

seq1  GGTGTCATTTCACTAATACTATTAAAGGACTAATACTATTAGTTCACTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCATTTCACTAATACTATTAAAGGACTAATACTATTAGTTCACTAT  1048

seq1  TAAAGCACAGCCATCAGGCTATTTATTAAGCTGTCCTTTTAATGA-TCTC  1098
      ||||||||||||||||||||||||| |||||||||||||| |||| ||||
seq2  TAAAGCACAGCCATCAGGCTATTTAATAAGCTGTCCTTTT-ATGACTCTC  1097

seq1  CATCATCC-TCCACTAA-GTGTATCCCTTTCCTTACCATTTCTGA--TGC  1144
       ||||||| |||||||| ||||||||  ||||| || ||||||||  |||
seq2  AATCATCCTTCCACTAAGGTGTATCC--TTCCTAACAATTTCTGAAGTGC  1145

seq1  TACTTTTGTCTCTATAATGCATGGAA  1170
      |||||||||||||   ||||||||||
seq2  TACTTTTGTCTCTTATATGCATGGAA  1171


seq1: chr2_75247074_75248164
seq2: B6Ng01-183O19.g_69_1163 (reverse)

seq1  CACA-TCTAG-AGCTC--AAATGGGGGTCTAGATGGGCACAGATTGGAAA  46
      |||| ||||| |||||  || ||||||||||||| ||||||||| || ||
seq2  CACATTCTAGAAGCTCCAAATTGGGGGTCTAGATTGGCACAGATCGG-AA  49

seq1  GGTGAGAAATGGGGTCT-AGGAAATCAAAAGAAATCTAGG-AAAGATGAT  94
       ||||||||| |||||| || ||||||||||||||||||| |||||||||
seq2  CGTGAGAAAT-GGGTCTAAGAAAATCAAAAGAAATCTAGGAAAAGATGAT  98

seq1  CATGTCACAGGAAGTTGG-AAGTTAACAGTGTCTAATTCAGGGGCTCTAA  143
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  CATGTCACAGGAAGTTGGAAAGTTAACAGTGTCTAATTCA-GGGCTCTAA  147

seq1  CACATAGGCCCAGGAAGAGGCCTTTGATTTTGTTATGTGGAGGACATTGA  193
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  CACATAGGCCCAGGAAGAGGCCTTGATTTTTGTTATGTGGAGGACATTGA  197

seq1  CAACTTCTGTCCTACTGTCTTGACAGAGTGTTTAGAACTGAAATCAGAAG  243
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAACTTCTGTCCTACTGTCTTGACAGAGTG-TTAGAACTGAAATCAGAAG  246

seq1  GAAATAGAGTGATTAACAAGTCTTCAACTTTAATCCCAG-CCAAGACATC  292
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAAATAGAGTGATTAACAAGTCTTCAACTTTAATCCCAGCCCAAGACATC  296

seq1  ATGGAAACTCATACAGAGGCACTAAATGTTTCATTTAGAAAATTTGCCTC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACTCATACAGAGGCACTAAATGTTTCATTTAGAAAATTTGCCTC  346

seq1  CCAACAGTTAATAAAGTGTTAAGGAGCCAATACATAAATTTTCACTAAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGTTAATAAAGTGTTAAGGAGCCAATACATAAATTTTCACTAAAG  396

seq1  AAACAATGGAGATTGGAAAGCCACTGGCAAAGTGGGAATAGGGATGGAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGGAGATTGGAAAGCCACTGGCAAAGTGGGAATAGGGATGGAGA  446

seq1  CTTCAGGTTGAGGGCGGGACATTCTGAGGGTGCAAACAAATAACAGACTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGTTGAGGGCGGGACATTCTGAGGGTGCAAACAAATAACAGACTT  496

seq1  GTGGAAAGGGATAGATAATGTAAGAACTAAAGAAAGAGAGTCTGTCAGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGGGATAGATAATGTAAGAACTAAAGAAAGAGAGTCTGTCAGAA  546

seq1  TGAGGAAGACAGAACAGAGATCTGGACCCAGTTCCTAACTTTACAAAGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGACAGAACAGAGATCTGGACCCAGTTCCTAACTTTACAAAGGA  596

seq1  GAAGACACGTGGAAGGATGCATGGGCACCGCTGACCAAACAAGGTGTCAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACACGTGGAAGGATGCATGGGCACCGCTGACCAAACAAGGTGTCAA  646

seq1  TTTATCCATATCGAGTGCCACCAAGTAGACAAAGGTTTCAGACTCATAGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCATATCGAGTGCCACCAAGTAGACAAAGGTTTCAGACTCATAGT  696

seq1  TAAACAAAACAATTAAAACAAGAAACTGTCTCGGCTTCCCAAGAGATGAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAACAATTAAAACAAGAAACTGTCTCGGCTTCCCAAGAGATGAA  746

seq1  TGAGCGGGAGGCCTATGGGCCTCTGCTTTCCTCTTAACGTTCCTTTCCCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGGGAGGCCTATGGGCCTCTGCTTTCCTCTTAACGTTCCTTTCCCC  796

seq1  AAAACACTGAATTTCTGAACTTAGAAAAGAACTACACAAAGCATGAAGCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTGAATTTCTGAACTTAGAAAAGAACTACACAAAGCATGAAGCA  846

seq1  TGTGTGGAGGCCCAGAACGTTAGGTTTCCGCTCAGCTTCGTCCTGGTTTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAGGCCCAGAACGTTAGGTTTCCGCTCAGCTTCGTCCTGGTTTA  896

seq1  AGTCTAGCCAGCAGAAATAACTGAGCAAGCTCTATTAGTTTCCATGTAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGCCAGCAGAAATAACTGAGCAAGCTCTATTAGTTTCCATGTAAA  946

seq1  TCTTCCTGATAGCCACTGCCCTGAGCCTTCATACCGCTCAACAATAATCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGATAGCCACTGCCCTGAGCCTTCATACCGCTCAACAATAATCC  996

seq1  TCTTGGGCAGCTTCACTCGCTCCTCAGACTCCGCTGTCTGGAAGACTTAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGCAGCTTCACTCGCTCCTCAGACTCCGCTGTCTGGAAGACTTAA  1046

seq1  CAAGACATAGAAGGCTCATTCCTTCTGGATTTGTTGCTCCTTAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATAGAAGGCTCATTCCTTCTGGATTTGTTGCTCCTTAGAATTC  1095


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