BAC Information

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BAC

Clone NameB6Ng01-184A05
Chromosome2 (Build37)13 (Build37)
Map Location 123,050,804 - 123,051,47638,080,790 - 38,081,909
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184A05.bB6Ng01-184A05.g
ACCGA009495GA009496
length1,0121,116
definitionB6Ng01-184A05.b B6Ng01-184A05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,050,804 - 123,051,476)(38,080,790 - 38,081,909)
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
atcaccgtcgttccccagctgatgagttctgaattcggcagttgaatcct
tctcaacagtctgtgttacgggaacctttataaacgtgatccgcagttct
ggttccggaatgagggatcctccttgcgccagtcccgagttttttttctc
gtcccggaattcggcaccaattgttattagacgcgttctcacgaccggcc
aggaagaacaccacagaccagaatcttctgcggcaaagctttatttctta
catcttcaggagccagggtgcaggaagcaagagagcaagaagcaagagag
caagaagcaagagagcaagaagcaagagagagcgaaaagcaagagagaga
aaagacgaaaccccgtccctcttaaggagcattctccttcgcctcggacg
tgtcactccctgattggctgcagcccatcggccgagttgacgtcacgggg
aaggcagagcacaagtagtcataagatacccttggcacatgcgcagatta
tttgtttaccacttagaacacaggatgtcagcgccatcttgtaacggcga
atgtgggggcggctcccaacaggcaaactcagagctggaaatacagctca
atggcagagcattttcctggctaacttgaacacaaggccccaggttcaag
cccagcactataagcgtgtaagggttggggagaaccatggaaacccctga
aattgttctagagagagaagccctgggtccaagctagacagcacttttga
gtattggacaacacggtgttgaaaaccgtggtacattaggctgccatgga
tggccctgtggtttagggcaggggtgagcccgagggcagggaggtcagac
aaaaggctatttcaatagcctcagctagggtggtggctacagaacaaaag
ctagagactggggtgtgcctgacgctggctcccagctcctgcactgctgc
tgtatgctgagg
gaattcaatgacaacagaataaattccttttggaagcgtgtgtgcgtgtg
tgtgtgcgtgtgtgtgtgtgcgcgtgtcagagtagaggactgttctggga
atcagttcacaccttcacttgctgaggaagagctctctttctgcagtgct
aacccacccaggctagctgcctcacgttctccatgaacccgaactggctt
tttcatgtgattgctggctctttaacagtgttctagggattaagctcaag
tcctcagaacaaaacaaaatggtattactgacacagcttagaagacattt
caagaatggtggctttggggctggtaagatggcttagtgggtaaaagtgc
tggcatgcaagcccggcaacctgagtttggcccccggcaagctgtcagca
tgctcccaggggcacatgtgcacccacagacacacagcacgggtttaaaa
gtatgtttgagaagaatgtttcatttctagtaaaccaaatagtatttatt
tttccctttaaaagtcagcattactatacacatcagtaatcacacgtcta
agactggaattagaacggacaattttgcattaccttctccttttacaaac
agaatagttgtgtctgcactgggtgaagcttctggttcactggatacatc
ctcctcttctttatcttctgcctaagggaagcatcattaaaaacagattg
ctgagaaagggctggaaaaccactgagttccctagaccgggatgaaatgc
tgctctgtgggttctagtctgtcagttctctcttccccttctgctaactg
gagagcatgaagaacatgggagaacactctcctagtatcacactttacag
tgtcgtttacagtgtcgtaactgggggaacatgaacacactctcctagta
tcacactttacagtgtcgttcctgtgctggcaagttgagcagtcaggaca
tcctgaatgtgatgcatgagcctttccttgggaaagccacctcctggatc
acgtgtcctcaccttaacctccagctctggaagtgtgaccaggtgcatgt
acgttatgaatctcagaacactcagccctcttgccataatctccaatcgg
ccaatgtcttcactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123050804_123051476
seq2: B6Ng01-184A05.b_42_662 (reverse)

seq1  TGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCCT  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTTGGGAGCCGCCCCCACATTCGCCGTTACAAGATGGCGCTGACATCCT  50

seq1  GTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATTTTA  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATCTTA  100

seq1  CGACTACTTGTACTCTGCCTTTCCCGTGAACGTCAGCTCGGCC-ATGGGC  149
       |||||||||| ||||||||| |||||| |||||| ||||||| ||||||
seq2  TGACTACTTGTGCTCTGCCTTCCCCGTG-ACGTCAACTCGGCCGATGGGC  149

seq1  TGCAGCCAATCAGGGAGTGATGCGTCCTAGGCAAAATATAACTCTCCTAA  199
      ||||||||||||||||||||  ||||| |||| ||  | ||  ||||| |
seq2  TGCAGCCAATCAGGGAGTGACACGTCCGAGGCGAAGGAGAATGCTCCTTA  199

seq1  AAAGGGGACGGGGTTTTCCGCCATTCTCTCTCGCTGGCATCTCTCTGGCT  249
      | | ||||||||||||  || | || |||||| || || | || ||  ||
seq2  AGA-GGGACGGGGTTT--CGTC-TTTTCTCTCTCTTGCTTTTCGCTCTCT  245

seq1  CTGCGCGCCCTGCGCTCTCTCGCTGCCTAAAGATGTAAACAATAGAGCGC  299
      ||  ||  | |  ||||||| ||| | |                      
seq2  CT-TGCTTCTT--GCTCTCTTGCTTCTT----------------------  270

seq1  GCTCTGCGCTTTGGTGGCGCCGGAGCTCTGGCTCCTAAAGATGTAAGATA  349
      |||||     ||| |           ||| |||                 
seq2  GCTCT----CTTGCT-----------TCTTGCT-----------------  288

seq1  GAAGGGGCTTTCGCTTTTGGGGCTGGGGGTTTGCGCTCCTAGCTCCTGAA  399
             || | ||||               ||| | ||| |||||||||
seq2  -------CTCTTGCTT-------------CCTGCAC-CCTGGCTCCTGAA  317

seq1  GATGTAAGCAATAAAGTTTTGCCGCAGAAGATTCTGGTCTGTTGTGTTCT  449
      |||||||| ||||||| ||||||||||||||||||||||||| |||||||
seq2  GATGTAAGAAATAAAGCTTTGCCGCAGAAGATTCTGGTCTGTGGTGTTCT  367

seq1  TCCTGGCCGGGCGTGCGAACG---CTAATAAGAATTGGTGCCGAATTCCG  496
      |||||||||| |||| |||||   ||||||| ||||||||||||||||||
seq2  TCCTGGCCGGTCGTGAGAACGCGTCTAATAACAATTGGTGCCGAATTCCG  417

seq1  GGACGAGAGAAATCCGGGACGAGAAAAAATCCGGGAAGAAAAAACCCGGG  546
      |||||||| |||                                      
seq2  GGACGAGAAAAA--------------------------------------  429

seq1  AGGAAACTCGGGACGGGAGTTTCACCGGCGCAAGGAAGATCCCTCATTCC  596
         |||||||||           || |||||||||| |||||||||||||
seq2  ---AAACTCGGG-----------ACTGGCGCAAGGAGGATCCCTCATTCC  465

seq1  AGAACCAGAACTGCGGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACTG  646
       ||||||||||||||| || || | ||||||||||||||||  |||||||
seq2  GGAACCAGAACTGCGGATCACGTTTATAAAGGTTCCCGTAACACAGACTG  515

seq1  TTAAGAAGGATTCAACTGCATGAATTC-----------------------  673
      || ||||||||||||||||  ||||||                       
seq2  TTGAGAAGGATTCAACTGC-CGAATTCAGAACTCATCAGCTGGGGAACGA  564

seq1  --------------------------------------------------  673
                                                        
seq2  CGGTGATAAAGGTTCCCGTAAAGCAGACTGTTAAGAAGGATTCAACTGTA  614

seq1  -------  673
             
seq2  TGAATTC  621

seq1: chr13_38080790_38081909
seq2: B6Ng01-184A05.g_63_1178

seq1  GAATTCAATGACAACAGAATAAATTCCTTTTGGAAGCGTGTGTGCGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGACAACAGAATAAATTCCTTTTGGAAGCGTGTGTGCGTGTG  50

seq1  TGTGTGCGTGTGTGTGTGTGCGCGTGTCAGAGTAGAGGACTGTTCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCGTGTGTGTGTGTGCGCGTGTCAGAGTAGAGGACTGTTCTGGGA  100

seq1  ATCAGTTCACACCTTCACTTGCTGAGGAAGAGCTCTCTTTCTGCAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTCACACCTTCACTTGCTGAGGAAGAGCTCTCTTTCTGCAGTGCT  150

seq1  AACCCACCCAGGCTAGCTGCCTCACGTTCTCCATGAACCCGAACTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCCAGGCTAGCTGCCTCACGTTCTCCATGAACCCGAACTGGCTT  200

seq1  TTTCATGTGATTGCTGGCTCTTTAACAGTGTTCTAGGGATTAAGCTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTGATTGCTGGCTCTTTAACAGTGTTCTAGGGATTAAGCTCAAG  250

seq1  TCCTCAGAACAAAACAAAATGGTATTACTGACACAGCTTAGAAGACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAACAAAACAAAATGGTATTACTGACACAGCTTAGAAGACATTT  300

seq1  CAAGAATGGTGGCTTTGGGGCTGGTAAGATGGCTTAGTGGGTAAAAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGGTGGCTTTGGGGCTGGTAAGATGGCTTAGTGGGTAAAAGTGC  350

seq1  TGGCATGCAAGCCCGGCAACCTGAGTTTGGCCCCCGGCAAGCTGTCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCAAGCCCGGCAACCTGAGTTTGGCCCCCGGCAAGCTGTCAGCA  400

seq1  TGCTCCCAGGGGCACATGTGCACCCACAGACACACAGCACGGGTTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCAGGGGCACATGTGCACCCACAGACACACAGCACGGGTTTAAAA  450

seq1  GTATGTTTGAGAAGAATGTTTCATTTCTAGTAAACCAAATAGTATTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTGAGAAGAATGTTTCATTTCTAGTAAACCAAATAGTATTTATT  500

seq1  TTTCCCTTTAAAAGTCAGCATTACTATACACATCAGTAATCACACGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTAAAAGTCAGCATTACTATACACATCAGTAATCACACGTCTA  550

seq1  AGACTGGAATTAGAACGGACAATTTTGCATTACCTTCTCCTTTTACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGAATTAGAACGGACAATTTTGCATTACCTTCTCCTTTTACAAAC  600

seq1  AGAATAGTTGTGTCTGCACTGGGTGAAGCTTCTGGTTCACTGGATACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTTGTGTCTGCACTGGGTGAAGCTTCTGGTTCACTGGATACATC  650

seq1  CTCCTCTTCTTTATCTTCTGCCTAAGGGAAGCATCATTAAAAACAGATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTCTTTATCTTCTGCCTAAGGGAAGCATCATTAAAAACAGATTG  700

seq1  CTGAGAAAGGGCTGGAAAACCACTGAGTTCCCTAGACCGGGATGAAATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGGGCTGGAAAACCACTGAGTTCCCTAGACCGGGATGAAATGC  750

seq1  TGCTCTGTGGGTTCTAGTCTGTCAGTTCTCTCTTCCCCTTCTGCTAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTGGGTTCTAGTCTGTCAGTTCTCTCTTCCCCTTCTGCTAACTG  800

seq1  GAGAGCATGAAGAACAT-GGAGAACACTCTCCTAGTATCACACTTTACAG  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGAGCATGAAGAACATGGGAGAACACTCTCCTAGTATCACACTTTACAG  850

seq1  TGTCGTTTACAGTGTCGTAACT-GGGGAACATGAACACACTCTCCTAGTA  898
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTCGTTTACAGTGTCGTAACTGGGGGAACATGAACACACTCTCCTAGTA  900

seq1  TCACACTTTACAGTGTCGTTCCTGTGCTGGCAAGTTGAGCAGTCAGGACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTTACAGTGTCGTTCCTGTGCTGGCAAGTTGAGCAGTCAGGACA  950

seq1  TCCTGAATGTGATGCATGAGCCTTTCCTTGGGAAAGCCACCTCCTGGATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATGTGATGCATGAGCCTTTCCTTGGGAAAGCCACCTCCTGGATC  1000

seq1  ACCGTGTCCCTCCACCTTAACCTCCAGCTCTGGGAAGTGTGACCAAGGGT  1048
      | |||||||   ||||||||||||||||||| |||||||||||||  |||
seq2  A-CGTGTCC--TCACCTTAACCTCCAGCTCT-GGAAGTGTGACCA--GGT  1044

seq1  GCATGTACG-TATGAATCTCAAGACAACTCAGGCCTC-TGCCATAATCTC  1096
      ||||||||| |||||||||| |||  |||||| |||| ||||||||||| 
seq2  GCATGTACGTTATGAATCTC-AGAACACTCAGCCCTCTTGCCATAATCT-  1092

seq1  CCAATTCGCCCATGTCTTCACTGC  1120
      |||||  ||| |||||||||||||
seq2  CCAATCGGCCAATGTCTTCACTGC  1116