BAC Information

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BAC

Clone NameB6Ng01-184N16
Chromosome8 (Build37)2 (Build37)
Map Location 90,503,181 - 90,503,465157,647,235 - 157,648,286
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423
Downstream geneLOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184N16.bB6Ng01-184N16.g
ACCGA010125GA010126
length9831,056
definitionB6Ng01-184N16.b B6Ng01-184N16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,503,181 - 90,503,465)(157,647,235 - 157,648,286)
sequence
gaattctagcccagcctggtctacaaagagagtcccaggacagccaggga
gaaaccctatctcaaagtctcaaaaagaaataaacaagccgggcgtggtg
gcgcacgcctttaatcccagcactcgggaggcagaggcaggcggatttct
gagttcgaggccagcctggtctacaaagtgagttccaagacagccagggc
tacacagagaaaccctgtctcgaaaaacaaacaaacaaacaaacaaacaa
acaaacaaagcaaaagcagagtttcaagtcatctccagctgtacagcaag
gccagtctgagctgcctgagaccctgccatacacatagagagaaaaaact
ggttttttgagacaggatttctctgtacccctacctgacctggaacttgc
tctgtagaccaggctaaacttgaacctagagatccacctgcctctctcta
ccaagtgctgacattaaagttgctcaccaccatgcctggcaatgcactaa
aatattttaatgatcaatgttcaaactaaaattctagatcactgggtctc
aacctttgggtcgcaaccgccttggagttgaatgacaggggttgcctaag
acaattgggacacacagatatttacattatgattcacaatagtagcacaa
ttacagttataaagtagcaatgaaaataacgttatggtttgggggtcacc
acaaaatgaggagctgtattaaagggtccaagcattaggaaggttgagaa
cacctctacacagtaatgaagaagactggggggcagaaggggaatggagg
ggagacacttcactttgtggttgcattatatttcaagagattgtcgcttc
tggaggaacaatacactgttagggaaaacttatacttaagcaactatgtt
aaaaattaaaaataagttaagcctggacagatggctcagccaaagagcac
tgggacgcttcttttcagaggctagctacatga
gaattccttcagcatatggctctgtaatgtgtagcagtggggagctgaat
aaataaccagaaatatggattattcagactggaatgctgaggttctagga
ggctaattaaagagctccaaggggcttgggagccagagcctgcccctctc
agagccaactctgcctcctgtctctgtctccttctgtctctctgtctctg
cctctctctctctcccctgctccaaccaagactgttttagatgctgtaat
atctcattatctcctctgataatacttgatgtttattattgaacctctac
ccatgtcacatctcccaacctagtcctctgccctcttagattctagatgt
ggagacctttgtttgctgtgttagatacaccacaagatggccagcatgtt
tgtctgactcaacggaactagaggtgctttctttgtgagactgtagtcct
tgaaaatctggaactcacagagatcttcctgcctctgctttctaagttct
ggcatttaagggtactaccatacccagtttggattgtgagcttctcagag
cagcaatccaatcttctcctgtccaacaatagatgtacagtggcttccag
tccatcttctccgtgtgagctagaaaagctgaggatgctcttactgttta
gagccactgatgcagaatttctacctgaacccatagataggctgcagaga
ggagagagacttgtttaaagacaatggagtgaagtgttttgtcctgggtt
tcctggccacatttttagaagatgaagagcaaagaacaggctgtagggta
tttgtgatactgaagctcaaattcaaggagacctaagtgccaggccgttc
caggctccgcctgcaaccataaagccagtgccttgtcccttctgagcctt
gaactctcagccgtcttctttcatcttcctgagccctcctgggctgtgtt
ttgggtagcaattccctgcctcatttctgcttcagcctcaaaggcagcct
tcagcaagatgtggaactggactctattcttctggccttggtctttttcc
tctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_90503181_90503465
seq2: B6Ng01-184N16.b_59_305 (reverse)

seq1  TTTGTTTGTTTGTTTGTTTTATTGTTTTTTGTTTTTTTCGAGACAGGGTT  50
      |||||||||||||||||||  |||||| || | |||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTGTTTGTTTGTT-TGTTTTTCGAGACAGGGTT  49

seq1  TCTCTGTATAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGG  100
      ||||||| |||||||||||||| |||| ||||||||||||||||||||||
seq2  TCTCTGTGTAGCCCTGGCTGTCTTGGAACTCACTTTGTAGACCAGGCTGG  99

seq1  CCTCGAACTCAGAAATCCGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAA  150
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  CCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAA  149

seq1  AGGCGTGCGCCACCACGCCCGGCTTGTCCCCATACTCTTAACTTTCTTTG  200
      |||||||||||||||||||||||||||          |||          
seq2  AGGCGTGCGCCACCACGCCCGGCTTGT----------TTA----------  179

seq1  TTTGGTTGGTTTCATTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCC  250
               |||| |||||    || |||| |||||||||        ||
seq2  ---------TTTCTTTTTGAGACTTTGAGATAGGGTTTCT--------CC  212

seq1  CTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCT  285
      ||||||||||||| |||| || |||||||||||||
seq2  CTGGCTGTCCTGGGACTCTCTTTGTAGACCAGGCT  247

seq1: chr2_157647235_157648286
seq2: B6Ng01-184N16.g_66_1121

seq1  GAATTCCTTCAGCATATGGCTCTGTAATGTGTAGCAGTGGGGAGCTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGCATATGGCTCTGTAATGTGTAGCAGTGGGGAGCTGAAT  50

seq1  AAATAACCAGAAATATGGATTATTCAGACTGGAATGCTGAGGTTCTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCAGAAATATGGATTATTCAGACTGGAATGCTGAGGTTCTAGGA  100

seq1  GGCTAATTAAAGAGCTCCAAGGGGCTTGGGAGCCAGAGCCTGCCCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATTAAAGAGCTCCAAGGGGCTTGGGAGCCAGAGCCTGCCCCTCTC  150

seq1  AGAGCCAACTCTGCCTCCTGTCTCTGTCTCCTTCTGTCTCTCTGTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAACTCTGCCTCCTGTCTCTGTCTCCTTCTGTCTCTCTGTCTCTG  200

seq1  CCTCTCTCTCTCTCCCCTGCTCCAACCAAGACTGTTTTAGATGCTGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTCTCTCCCCTGCTCCAACCAAGACTGTTTTAGATGCTGTAAT  250

seq1  ATCTCATTATCTCCTCTGATAATACTTGATGTTTATTATTGAACCTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTATCTCCTCTGATAATACTTGATGTTTATTATTGAACCTCTAC  300

seq1  CCATGTCACATCTCCCAACCTAGTCCTCTGCCCTCTTAGATTCTAGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCACATCTCCCAACCTAGTCCTCTGCCCTCTTAGATTCTAGATGT  350

seq1  GGAGACCTTTGTTTGCTGTGTTAGATACACCACAAGATGGCCAGCATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCTTTGTTTGCTGTGTTAGATACACCACAAGATGGCCAGCATGTT  400

seq1  TGTCTGACTCAACGGAACTAGAGGTGCTTTCTTTGTGAGACTGTAGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGACTCAACGGAACTAGAGGTGCTTTCTTTGTGAGACTGTAGTCCT  450

seq1  TGAAAATCTGGAACTCACAGAGATCTTCCTGCCTCTGCTTTCTAAGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTGGAACTCACAGAGATCTTCCTGCCTCTGCTTTCTAAGTTCT  500

seq1  GGCATTTAAGGGTACTACCATACCCAGTTTGGATTGTGAGCTTCTCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTAAGGGTACTACCATACCCAGTTTGGATTGTGAGCTTCTCAGAG  550

seq1  CAGCAATCCAATCTTCTCCTGTCCAACAATAGATGTACAGTGGCTTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCCAATCTTCTCCTGTCCAACAATAGATGTACAGTGGCTTCCAG  600

seq1  TCCATCTTCTCCGTGTGAGCTAGAAAAGCTGAGGATGCTCTTACTGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTCTCCGTGTGAGCTAGAAAAGCTGAGGATGCTCTTACTGTTTA  650

seq1  GAGCCACTGATGCAGAATTTCTACCTGAACCCATAGATAGGCTGCAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTGATGCAGAATTTCTACCTGAACCCATAGATAGGCTGCAGAGA  700

seq1  GGAGAGAGACTTGTTTAAAGACAATGGAGTGAAGTGTTTTGTCCTGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGACTTGTTTAAAGACAATGGAGTGAAGTGTTTTGTCCTGGGTT  750

seq1  TCCTGGCCACATTTTTAGAAGATGAAGAGCAAAGAACAGGCTGTAGGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCCACATTTTTAGAAGATGAAGAGCAAAGAACAGGCTGTAGGGTA  800

seq1  TTTGTGATACTGAAGCTCAAATTCAAGGAGACCTAAGTGCCAGGCCGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATACTGAAGCTCAAATTCAAGGAGACCTAAGTGCCAGGCCGTTC  850

seq1  CAGGCTCCGCCTGCACCCATAAAGCCAGTGCCTTGTCCCTTCTGAGCCTT  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCGCCTGCAACCATAAAGCCAGTGCCTTGTCCCTTCTGAGCCTT  900

seq1  GAACTCTCAGCCGTCTTCCTTCATCCTCCTGAGCCCTCCTGGGCTGTGTT  950
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  GAACTCTCAGCCGTCTTCTTTCATCTTCCTGAGCCCTCCTGGGCTGTGTT  950

seq1  TTGGGTAGC-ATTCCCTGCCTCATTTCTGCTCCAG-CTC-AAGGCAGCCT  997
      ||||||||| ||||||||||||||||||||| ||| ||| ||||||||||
seq2  TTGGGTAGCAATTCCCTGCCTCATTTCTGCTTCAGCCTCAAAGGCAGCCT  1000

seq1  TCAGC-AGATGTGGGACTGGACTCTATTCTTCTGGCCTTTGTCTTTTTCC  1046
      ||||| |||||||| |||||||||||||||||||||||| ||||||||||
seq2  TCAGCAAGATGTGGAACTGGACTCTATTCTTCTGGCCTTGGTCTTTTTCC  1050

seq1  TCTGTA  1052
      ||||||
seq2  TCTGTA  1056