BAC Information

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BAC

Clone NameB6Ng01-185I02
Chromosome2 (Build37)
Map Location 39,613,131 - 39,761,064
singlet/doubletdoublet
Overlap genenone
Upstream geneNr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185I02.bB6Ng01-185I02.g
ACCGA010595GA010596
length1,1631,171
definitionB6Ng01-185I02.b B6Ng01-185I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,613,131 - 39,613,930)(39,759,918 - 39,761,064)
sequence
gaattcccatgcacagctgcccattgttgggttagttggactacagactg
taagtcattacaataaattcccttaatatacagagacattccataagttc
tgtgactctggagaaccctgattaatacagtaatgttatttggaaataac
ttttgagtttttcctttattatttttatcccctttatctatttcacttgt
cttattgctctggctatgacttcaagcactatattgaatgagaggaaaga
gaatgacatcattgtcttgttcttggttttattggaaacattttatcttt
tgtctgtttagtatgatattgattttggagttgcttattttgcttttatt
atggtgagatatgttctttgtggctagactctctgggacttttatcatga
aagtatgttagattttgtaaaaggcattttctgtattgaatgagatgatc
acgtggtttagcctttgagtctatttatatagtagattacatttattgaa
tcacatatttttgtatttatgtttatcagagatattgttccataatttta
tctttattttatggcctattgtctaattttgatatcagggtaatactggc
ttcataaaaagtattctaaaatgtttctgccattctgattatataaaata
attttatgaatgttatttttaattcctttttgaagatctggtagaatgca
gtgctgagtatatctagtcctggagtctttgagcatttatttttgatcac
ttcttctatgtcatttggcattatgaatctactaaaattatttacttaat
cttgacttaatattgataggtaatgtgtatctagaaattaatacatttct
tttagatttttctagactaaagaaagtgtattgggtagtaaaaaactgtg
agaaggtacaaatcatcagaattaaaaattaattttatgcttggagactt
caatagtcagatgtgattagagcagcattgtttcagtgttaagagaaata
gattaaaaaactcagactacttacattcaattatccatcaaggttgaaaa
aaagggaaaaaaaagtgggatcagcttcaaggacattcccaaggcctgaa
cttttactgaagctatggagcatcacggaaaaggatctatttatgaattg
gctctattgaaag

gaattcaacactctcttctagcctctacagataccaggcactcatttggt
ttgtatacatacattcacgtaaaacatccacacacctaaaatgtaaatga
atgactcctttaaaaacgcaagaattaagggcagttaagagcacggtcag
ctcttgtaaaggtcatggttcagttcttaaaacctatatggacttccagc
ttcagggtatcttatacccacttcttgtctcagcatgcatcagacatgaa
tgtgatatagacatgtatccaaataaaacacttatacacataaaataaaa
taaacagtaagtaaaaaattcaagaattaaatacatacgtttaaaaaatt
taaaaatacgtcattataagctaattcaaaatggaatcttttgtattgat
gatattgtttagctagattaaacatacaaatatagctctagtattgagtg
tcatattatgtacctcatctcacagacatgcttatacctatccacaaata
cacacatacatacacacatacacacacttgcatgcacacacacatgcaca
tgccattcaagttctttttcgcttttaggtatgcattatacatattcttc
attttatatatatatatatatatatatatatatatatatatatatatata
tatgactcatttctgttttttccagttgtttggcaagagtgttataatag
ctaataagcgggtcagaaaaactagaaaaattcagttgatatatcttaat
ttgtgtatgaaaaacatttttcatgaaatataaaatgctttgttgcacta
tcagcccacacatagacacagacagttgtgtttgttcattttttttttct
aactgcttcatctttgtactattactgtgacctctttgggtgtgtaatat
tgggtggataaggaatttatttttatagtagtctacataagtttattaat
tttattaaatcatacctgaatatgggcttgttttcctcctataatttttg
ccttcaggattcagctatattttagttagtgaacattctttgccaattgt
taattttgcaatgggttaactttaaggagaatatggtttaataagcttgg
attgttatagaaaaagcatgaaaaccatcttcagcttaacgtataggcca
tttttttcctcacaagttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_39613131_39613930
seq2: B6Ng01-185I02.b_404_1203

seq1  TTCTTTGTGGCTAGACTCTCTGGGACTTTTATCATGAAAGTATGTTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTGGCTAGACTCTCTGGGACTTTTATCATGAAAGTATGTTAGAT  50

seq1  TTTGTAAAAGGCATTTTCTGTATTGAATGAGATGATCACGTGGTTTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAAGGCATTTTCTGTATTGAATGAGATGATCACGTGGTTTAGCC  100

seq1  TTTGAGTCTATTTATATAGTAGATTACATTTATTGAATCACATATTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTCTATTTATATAGTAGATTACATTTATTGAATCACATATTTTTG  150

seq1  TATTTATGTTTATCAGAGATATTGTTCCATAATTTTATCTTTATTTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTTTATCAGAGATATTGTTCCATAATTTTATCTTTATTTTATG  200

seq1  GCCTATTGTCTAATTTTGATATCAGGGTAATACTGGCTTCATAAAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTGTCTAATTTTGATATCAGGGTAATACTGGCTTCATAAAAAGTA  250

seq1  TTCTAAAATGTTTCTGCCATTCTGATTATATAAAATAATTTTATGAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAATGTTTCTGCCATTCTGATTATATAAAATAATTTTATGAATGT  300

seq1  TATTTTTAATTCCTTTTTGAAGATCTGGTAGAATGCAGTGCTGAGTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAATTCCTTTTTGAAGATCTGGTAGAATGCAGTGCTGAGTATAT  350

seq1  CTAGTCCTGGAGTCTTTGAGCATTTATTTTTGATCACTTCTTCTATGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCTGGAGTCTTTGAGCATTTATTTTTGATCACTTCTTCTATGTCA  400

seq1  TTTGGCATTATGAATCTACTAAAATTATTTACTTAATCTTGACTTAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATTATGAATCTACTAAAATTATTTACTTAATCTTGACTTAATAT  450

seq1  TGATAGGTAATGTGTATCTAGAAATTAATACATTTCTTTTAGATTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGTAATGTGTATCTAGAAATTAATACATTTCTTTTAGATTTTTCT  500

seq1  AGACTAAAGAAAGTGTATTGGGTAGTAAAAAACTGTGAGAAGGTACAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAAGAAAGTGTATTGGGTAGTAAAAAACTGTGAGAAGGTACAAAT  550

seq1  CATCAGAA-TAAAAATTAA-TTTATGCTTGGAGACTTCAATAGTCAGATG  598
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  CATCAGAATTAAAAATTAATTTTATGCTTGGAGACTTCAATAGTCAGATG  600

seq1  TGATTAGAGCAGCATTGTTCCAGTGTTTAAGAGAAATAGATTAAAAAAAC  648
      ||||||||||||||||||| ||||| ||||||||||||||||||||||  
seq2  TGATTAGAGCAGCATTGTTTCAGTG-TTAAGAGAAATAGATTAAAAAACT  649

seq1  CAGACTACTTTAACATTCAAATTATCCATCAAAGTTG-AAAAAAGGGAAA  697
      ||||||||||  |||||| ||||||||||||| |||| ||||||||||||
seq2  CAGACTACTT--ACATTC-AATTATCCATCAAGGTTGAAAAAAAGGGAAA  696

seq1  AAAAAGTGGGATCCAGCTCAAAGGGACA-TCCCAAGGCCTGACACTATTA  746
      |||||||||||| |||||  || ||||| ||||||||||||| ||| |||
seq2  AAAAAGTGGGAT-CAGCTTCAA-GGACATTCCCAAGGCCTGA-ACTTTTA  743

seq1  CTGAAGCTATGGAGCATTCACGAAAAGGGATCTA-TTATGA--TTGCTCT  793
      |||||||||||||||| ||||| ||| ||||||| ||||||  | |||||
seq2  CTGAAGCTATGGAGCA-TCACGGAAAAGGATCTATTTATGAATTGGCTCT  792

seq1  A-TGAAAG  800
      | ||||||
seq2  ATTGAAAG  800


seq1: chr2_39759918_39761064
seq2: B6Ng01-185I02.g_63_1233 (reverse)

seq1  TTTAACTT-TGA-GAAAAAAATGCCTTAAACATTAAGCTG-AGATGTTTT  47
      |||||||| ||| |||||||||| | || || |||||||| ||||| |||
seq2  TTTAACTTGTGAGGAAAAAAATGGCCTATACGTTAAGCTGAAGATGGTTT  50

seq1  ---TGCTTTTTCTAT-ACAATC--AGCTTATT-AACCATATTCTCTTAAA  90
         |||||||||||| ||||||  |||||||| |||||||||||| | ||
seq2  TCATGCTTTTTCTATAACAATCCAAGCTTATTAAACCATATTCTCCTTAA  100

seq1  AGTTTAAACCATTG-AAAATAAACAAATTTTGCAAAGAATGTTCA-TAAC  138
      || |||| |||||| ||||| |||||  || |||||||||||||| ||||
seq2  AG-TTAACCCATTGCAAAATTAACAA--TTGGCAAAGAATGTTCACTAAC  147

seq1  TAAAATATAGCTGAATCTTAAAG--CAAAATTATAGGAGGAAAACAAG-C  185
      ||||||||||||||||| | |||   |||||||||||||||||||||| |
seq2  TAAAATATAGCTGAATCCTGAAGGCAAAAATTATAGGAGGAAAACAAGCC  197

seq1  CATATTCA-GTATGATTTAAT-AAATTTATAAACTTATGTAGACTACTAT  233
      |||||||| |||||||||||| ||||| ||||||||||||||||||||||
seq2  CATATTCAGGTATGATTTAATAAAATTAATAAACTTATGTAGACTACTAT  247

seq1  -AAAATTAATTCCTTATC--ACCAATATTACACACCCAAAGAGGTCACAG  280
       ||||| |||||||||||   |||||||||||||||||||||||||||||
seq2  AAAAATAAATTCCTTATCCACCCAATATTACACACCCAAAGAGGTCACAG  297

seq1  TAATAGTAC-AAGATGAAGCAGTTAG--AAAAAAAATGAACAAACACAAC  327
      ||||||||| ||||||||||||||||  ||||||||||||||||||||||
seq2  TAATAGTACAAAGATGAAGCAGTTAGAAAAAAAAAATGAACAAACACAAC  347

seq1  TGTCTGTGTCTATGTGTGGGCTGATAGTGCAACAAAGCA-TTTATATTTC  376
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTCTGTGTCTATGTGTGGGCTGATAGTGCAACAAAGCATTTTATATTTC  397

seq1  ATG-AAAATGTTTTTCATACAC-AATTAAGATATATCAACTGAATTTTTC  424
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGAAAAATGTTTTTCATACACAAATTAAGATATATCAACTGAATTTTTC  447

seq1  TAGTTTTTCTGA-CCGCTTATTAGCTATTATAACACTTTTGCCAAACAAC  473
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TAGTTTTTCTGACCCGCTTATTAGCTATTATAACACTCTTGCCAAACAAC  497

seq1  TGGAAAAAACAGAAATGAGTCATATATATATATATATATATATATATATA  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAACAGAAATGAGTCATATATATATATATATATATATATATATA  547

seq1  TATATATATATATATATATAAAATGAAGAATATGTATAATGCATACCTAA  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATAAAATGAAGAATATGTATAATGCATACCTAA  597

seq1  AAGCGAAAAAGAACTTGAATGGCATGTGCATGTGTGTGTGCATGCAAGTG  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAAAAAGAACTTGAATGGCATGTGCATGTGTGTGTGCATGCAAGTG  647

seq1  TGTGTATGTGTGTATGTATGTGTGTATTTGTGGATAGGTATAAGCATGTC  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTGTGTATGTATGTGTGTATTTGTGGATAGGTATAAGCATGTC  697

seq1  TGTGAGATGAGGTACATAATATGACACTCAATACTAGAGCTATATTTGTA  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATGAGGTACATAATATGACACTCAATACTAGAGCTATATTTGTA  747

seq1  TGTTTAATCTAGCTAAACAATATCATCAATACAAAAGATTCCATTTTGAA  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATCTAGCTAAACAATATCATCAATACAAAAGATTCCATTTTGAA  797

seq1  TTAGCTTATAATGACGTATTTTTAAATTTTTTAAACGTATGTATTTAATT  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTATAATGACGTATTTTTAAATTTTTTAAACGTATGTATTTAATT  847

seq1  CTTGAATTTTTTACTTACTGTTTATTTTATTTTATGTGTATAAGTGTTTT  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTTTTTACTTACTGTTTATTTTATTTTATGTGTATAAGTGTTTT  897

seq1  ATTTGGATACATGTCTATATCACATTCATGTCTGATGCATGCTGAGACAA  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATACATGTCTATATCACATTCATGTCTGATGCATGCTGAGACAA  947

seq1  GAAGTGGGTATAAGATACCCTGAAGCTGGAAGTCCATATAGGTTTTAAGA  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGTATAAGATACCCTGAAGCTGGAAGTCCATATAGGTTTTAAGA  997

seq1  ACTGAACCATGACCTTTACAAGAGCTGACCGTGCTCTTAACTGCCCTTAA  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCATGACCTTTACAAGAGCTGACCGTGCTCTTAACTGCCCTTAA  1047

seq1  TTCTTGCGTTTTTAAAGGAGTCATTCATTTACATTTTAGGTGTGTGGATG  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCGTTTTTAAAGGAGTCATTCATTTACATTTTAGGTGTGTGGATG  1097

seq1  TTTTACGTGAATGTATGTATACAAACCAAATGAGTGCCTGGTATCTGTAG  1123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACGTGAATGTATGTATACAAACCAAATGAGTGCCTGGTATCTGTAG  1147

seq1  AGGCTAGAAGAGAGTGTTGAATTC  1147
      ||||||||||||||||||||||||
seq2  AGGCTAGAAGAGAGTGTTGAATTC  1171


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