BAC Information

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BAC

Clone NameB6Ng01-186A10
Chromosome2 (Build37)
Map Location 96,946,479 - 97,116,708
singlet/doubletdoublet
Overlap geneLOC100043267
Upstream genenone
Downstream geneLrrc4c, LOC621146, LOC664974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186A10.bB6Ng01-186A10.g
ACCGA010980GA010981
length9661,178
definitionB6Ng01-186A10.b B6Ng01-186A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,115,748 - 97,116,708)(96,946,479 - 96,947,657)
sequence
gaattccacatcctcttgtgaagattcacattggaaattagcctattaaa
agctttcagtattcttgtggtgaagaaatgggtgcttaatctgccatgcc
taaacttatttcaccacataatccatttgaaaagtatctgtaacagtctg
caggaaggtcccaggcatccctctgagttctctaatctttgccttagagt
aataacctgcaagaagtattcaaaaatggactactactaaagtaaatgca
gacagctaataattagagaatgcctactatattacagtcatgttgcaagt
catattgccagtatttttcacctcatttcgatagtaattttgtgcattta
tcttatcatcttcatgttgcatattacacagacagagatgtgacataagt
agagggaggttacgtcaaatcaaggaaaatgactgatatgaatgcattgc
ttaatgagcaggtagtctctcatattctgtgatagtacaccagttgatta
ttaaactaatgcacaagctcaaagaaaggatattttaattatgccttgat
caaagaagtctaagtaatttctattatatatactacacttaattcttcct
ttctctcctaatcaagatgtgttcattttagtgtaaatcatgacactttg
aagtcatgggtctgcatgtgttgtgtttaatttaccaaatgaatatatga
tcgtttatatttcgataaactgtccttttgcttgatgaggcatagatgtt
taaattgatttgtatgagcttcagttttcttaaaagaaaaagatgtggcc
acagagccattactgatgaaaaaattagctacgtagcactgggatagtta
ttgagaagctgttaatttttttttcaaacttttcttttttagtgattgtg
aaccagttataaaagccttaggcaaggtgggacagaagccagtaatgctt
gccctagagggtgaaa

gaattctacatgtacatatatttttattttttatttttaaagtggaaata
attcaggccatgacgcaacacatgctacagaaatgctctacaatgtacat
gcattattaggcctatatatgtaatttttaaatgttattttttattcaac
acttagtacagtcctaaagaacacataaaaattccactgttaatatgggt
cagatttatcaaaatgcataactttttttttcagtttcaaaagtatcatt
ggttagagcaaatcaacttaaccagttcagtgacattagtgtgtaggagc
aggaaagaagttaaaacctaacatgctgaattataggtttttagcactgt
cattcatgaggatttaaccttggtcaaatcacataatttttctgactgta
tgtttttctttgttgaaaagatgatagtaatgttgatctcaaatagatgt
cattacattaaattaaaacagtatatgattaaaggcttgaattaaataca
agttacaaggtataatattttttttactatatctgataattggatatgag
ccactaagtctcaagggctttacatttaggggtgagtagacttcttgtgg
aggacatgttaagcaatagagaacaaaatgcaataagtaatatgaagcta
atgaattaagtttctatctgggtaatacatatagcaagcccattccacag
gatttttggtaactagacctttgctgtcttacataatactcgaatagctt
atcatatgcttggggaaaaaacttagttagaatgaaaagaagggaagaga
gtaaaaatattctgaacctcctcatatgaatgcagccataccctggaggg
aaagatgcagtgaaaagttcttaggaacagtgattgatttgtcacacttt
gcaaccttatgatgtcacgataatcagctatcacatgttaaggtcagtac
tgtggtatccagattcatttcaaacagactctgacctcagccattccagc
attttactaagaagcgggtacttttctcaatgacagtcttaaagagaatc
ttatgctttgacacactcaacattaactcctatggcatttcatccatacc
tttaaattcatatagattcaactcatttttatgctgaaaagattctgaaa
gtcatcgataaggcaatgactttagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_97115748_97116708
seq2: B6Ng01-186A10.b_46_1011 (reverse)

seq1  TTTCA-CCTCTTAGGCAAGCA-TACT-GCTTCTGT-CCACCTTGCCTAAG  46
      ||||| |||||  |||||||| |||| |||||||| ||||||||||||||
seq2  TTTCACCCTCTAGGGCAAGCATTACTGGCTTCTGTCCCACCTTGCCTAAG  50

seq1  GCTTTTATAACT-GTTCACAATCACTAAAAAAGAAAAGTTTGAAAAAAAA  95
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATAACTGGTTCACAATCACTAAAAAAGAAAAGTTTGAAAAAAAA  100

seq1  ATTAACAGCTTCTCAATAACTATCCCAGTGCTACGTAGCTAATTTTTTCA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAGCTTCTCAATAACTATCCCAGTGCTACGTAGCTAATTTTTTCA  150

seq1  TCAGTAATGGCTCTGTGGCCACATCTTTTTCTTTTAAGAAAACTGAAGCT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATGGCTCTGTGGCCACATCTTTTTCTTTTAAGAAAACTGAAGCT  200

seq1  CATACAAATCAATTTAAACATCTATGCCTCATCAAGCAAAAGGACAGTTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAATCAATTTAAACATCTATGCCTCATCAAGCAAAAGGACAGTTT  250

seq1  ATCGAAATATAAACGATCATATATTCATTTGGTAAATTAAACACAACACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAAATATAAACGATCATATATTCATTTGGTAAATTAAACACAACACA  300

seq1  TGCAGACCCATGACTTCAAAGTGTCATGATTTACACTAAAATGAACACAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACCCATGACTTCAAAGTGTCATGATTTACACTAAAATGAACACAT  350

seq1  CTTGATTAGGAGAGAAAGGAAGAATTAAGTGTAGTATATATAATAGAAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTAGGAGAGAAAGGAAGAATTAAGTGTAGTATATATAATAGAAAT  400

seq1  TACTTAGACTTCTTTGATCAAGGCATAATTAAAATATCCTTTCTTTGAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGACTTCTTTGATCAAGGCATAATTAAAATATCCTTTCTTTGAGC  450

seq1  TTGTGCATTAGTTTAATAATCAACTGGTGTACTATCACAGAATATGAGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATTAGTTTAATAATCAACTGGTGTACTATCACAGAATATGAGAG  500

seq1  ACTACCTGCTCATTAAGCAATGCATTCATATCAGTCATTTTCCTTGATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTGCTCATTAAGCAATGCATTCATATCAGTCATTTTCCTTGATTT  550

seq1  GACGTAACCTCCCTCTACTTATGTCACATCTCTGTCTGTGTAATATGCAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTAACCTCCCTCTACTTATGTCACATCTCTGTCTGTGTAATATGCAA  600

seq1  CATGAAGATGATAAGATAAATGCACAAAATTACTATCGAAATGAGGTGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATGATAAGATAAATGCACAAAATTACTATCGAAATGAGGTGAA  650

seq1  AAATACTGGCAATATGACTTGCAACATGACTGTAATATAGTAGGCATTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGGCAATATGACTTGCAACATGACTGTAATATAGTAGGCATTCT  700

seq1  CTAATTATTAGCTGTCTGCATTTACTTTAGTAGTAGTCCATTTTTGAATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATTAGCTGTCTGCATTTACTTTAGTAGTAGTCCATTTTTGAATA  750

seq1  CTTCTTGCAGGTTATTACTCTAAGGCAAAGATTAGAGAACTCAGAGGGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCAGGTTATTACTCTAAGGCAAAGATTAGAGAACTCAGAGGGAT  800

seq1  GCCTGGGACCTTCCTGCAGACTGTTACAGATACTTTTCAAATGGATTATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGACCTTCCTGCAGACTGTTACAGATACTTTTCAAATGGATTATG  850

seq1  TGGTGAAATAAGTTTAGGCATGGCAGATTAAGCACCCATTTCTTCACCAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAATAAGTTTAGGCATGGCAGATTAAGCACCCATTTCTTCACCAC  900

seq1  AAGAATACTGAAAGCTTTTAATAGGCTAATTTCCAATGTGAATCTTCACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACTGAAAGCTTTTAATAGGCTAATTTCCAATGTGAATCTTCACA  950

seq1  AGAGGATGTGGAATTC  961
      ||||||||||||||||
seq2  AGAGGATGTGGAATTC  966


seq1: chr2_96946479_96947657
seq2: B6Ng01-186A10.g_64_1241

seq1  GAATTCTACATGTACATATATTTTTATTTTTTATTTTTAAAGTGGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATGTACATATATTTTTATTTTTTATTTTTAAAGTGGAAATA  50

seq1  ATTCAGGCCATGACGCAACACATGCTACAGAAATGCTCTACAATGTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGCCATGACGCAACACATGCTACAGAAATGCTCTACAATGTACAT  100

seq1  GCATTATTAGGCCTATATATGTAATTTTTAAATGTTATTTTTTATTCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATTAGGCCTATATATGTAATTTTTAAATGTTATTTTTTATTCAAC  150

seq1  ACTTAGTACAGTCCTAAAGAACACATAAAAATTCCACTGTTAATATGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTACAGTCCTAAAGAACACATAAAAATTCCACTGTTAATATGGGT  200

seq1  CAGATTTATCAAAATGCATAACTTTTTTTTTCAGTTTCAAAAGTATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTATCAAAATGCATAACTTTTTTTTTCAGTTTCAAAAGTATCATT  250

seq1  GGTTAGAGCAAATCAACTTAACCAGTTCAGTGACATTAGTGTGTAGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAGCAAATCAACTTAACCAGTTCAGTGACATTAGTGTGTAGGAGC  300

seq1  AGGAAAGAAGTTAAAACCTAACATGCTGAATTATAGGTTTTTAGCACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAAGTTAAAACCTAACATGCTGAATTATAGGTTTTTAGCACTGT  350

seq1  CATTCATGAGGATTTAACCTTGGTCAAATCACATAATTTTTCTGACTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGAGGATTTAACCTTGGTCAAATCACATAATTTTTCTGACTGTA  400

seq1  TGTTTTTCTTTGTTGAAAAGATGATAGTAATGTTGATCTCAAATAGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTTTGTTGAAAAGATGATAGTAATGTTGATCTCAAATAGATGT  450

seq1  CATTACATTAAATTAAAACAGTATATGATTAAAGGCTTGAATTAAATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATTAAATTAAAACAGTATATGATTAAAGGCTTGAATTAAATACA  500

seq1  AGTTACAAGGTATAATATTTTTTTTACTATATCTGATAATTGGATATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAAGGTATAATATTTTTTTTACTATATCTGATAATTGGATATGAG  550

seq1  CCACTAAGTCTCAAGGGCTTTACATTTAGGGGTGAGTAGACTTCTTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGTCTCAAGGGCTTTACATTTAGGGGTGAGTAGACTTCTTGTGG  600

seq1  AGGACATGTTAAGCAATAGAGAACAAAATGCAATAAGTAATATGAAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGTTAAGCAATAGAGAACAAAATGCAATAAGTAATATGAAGCTA  650

seq1  ATGAATTAAGTTTCTATCTGGGTAATACATATAGCAAG-CTATTCCACAG  699
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  ATGAATTAAGTTTCTATCTGGGTAATACATATAGCAAGCCCATTCCACAG  700

seq1  GATTTTTGGTAACTAGACCTTTGCTGTCTTACATAATACTCGAATAGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGGTAACTAGACCTTTGCTGTCTTACATAATACTCGAATAGCTT  750

seq1  ATCATATGCTTGGGGAAAAAACTTAGTTAGAATGAAAAGAAGGGAAGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGCTTGGGGAAAAAACTTAGTTAGAATGAAAAGAAGGGAAGAGA  800

seq1  GTAAAAATATTCTGAACCTCCTCATATGAATGCAGCCATACCCTGGAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATATTCTGAACCTCCTCATATGAATGCAGCCATACCCTGGAGGG  850

seq1  AAAGATGCAGTG-AAAGTTCTTAGGAACAGTGATTGA-TTGTCACACTTT  897
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  AAAGATGCAGTGAAAAGTTCTTAGGAACAGTGATTGATTTGTCACACTTT  900

seq1  GCAACCTTATGATGTCACGATAATCAGCTATCACATGTTAAGGTCAGTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTTATGATGTCACGATAATCAGCTATCACATGTTAAGGTCAGTAC  950

seq1  TGTGGTATCCAGATTCATTTCAAACAGACTCCTGACCTCAGCCATTCCAG  997
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGGTATCCAGATTCATTTCAAACAGACT-CTGACCTCAGCCATTCCAG  999

seq1  CA-TTTACTAAGAAGCGGGTACTTTCCTCATTGACAGTCTT-AAGAGAAT  1045
      || |||||||||||||||||||||| |||| |||||||||| ||||||||
seq2  CATTTTACTAAGAAGCGGGTACTTTTCTCAATGACAGTCTTAAAGAGAAT  1049

seq1  C-TATGCCTTGACACACTCAACATT-ACT-CTATTGCAATTTCATCCCAT  1092
      | ||||| ||||||||||||||||| ||| |||| || ||||||| ||||
seq2  CTTATGCTTTGACACACTCAACATTAACTCCTATGGC-ATTTCAT-CCAT  1097

seq1  ACCTTTAAA-TCATATAGATCCATCTCCATTTTATGCTGAGAAAGATTCC  1141
      ||||||||| |||||||||| || |||  ||||||||||| |||||||| 
seq2  ACCTTTAAATTCATATAGATTCAACTCATTTTTATGCTGA-AAAGATTC-  1145

seq1  AGAAAAGTCCATCTGATAAGGGTAATGTATTTTAGCTC  1179
         ||||| |||| ||||| || |||| | ||||||||
seq2  -TGAAAGT-CATC-GATAA-GGCAATG-ACTTTAGCTC  1178


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