BAC Information

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BAC

Clone NameB6Ng01-186C11
Chromosome2 (Build37)
Map Location 29,223,368 - 29,413,124
singlet/doubletdoublet
Overlap geneCrsp8
Upstream geneGm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2
Downstream geneRapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186C11.bB6Ng01-186C11.g
ACCGA011073GA011074
length1,0331,140
definitionB6Ng01-186C11.b B6Ng01-186C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,412,099 - 29,413,124)(29,223,368 - 29,224,507)
sequence
gaattctgagcagatctttgccacagtatgggcgaagctgagctggaggg
agggatgtggcatatgcgtccttcgagtgtccatgccctgtcttgttgct
accgagaaggtgtgggggagcaaaggaggccccagggattggagaattcg
gcccctgaagagaggtgatgactcagatgggcgaggacattaacctatca
tctcctcccagtgggtcgccaagggacctctcaggccacctcagcacaca
cagctagcagggatccctggagcatgtggttggctctgcagccggcaccc
tactcccctccaataagaccaaggttataggctggcgaaatggcccagtg
ggtgaagtgctaggcagcaggaggacatgagtttggattcccagcaacca
tgaataagcaataagcgaagcttgtggggtaaaaatctgtagctttagtg
ctgagggtggggtggagactgatggatcctggggctcgatggccagctag
tggtggttaatgaaagactttgtctcaaaaaacaaaggttggggctggca
agatggctcagtggataagagcactgactgctcttccgaaggtcctgagt
tcaaatcccagcaaccacatggtggctcacaaccacccataatgagatct
gacaccctcttctggtgcgtctgaagacagctacagtgtattcatgtata
ataataaataaatctttaaaaaaaaaaaaaaaaaaaaaaaaatacaaagg
ttggcaggatggctcagcaggtgaggacagttggggccatgcctgatgac
tggcgtccatccccaggagccatatggtgacagaaaggaccggctcccac
aagtttctcctctgacctcttacacatgcactagggcatacactcgtgca
cccctgtaaaaacaaagtctaaaataagggtagagactagttaagggaag
gcatgccagtgcacccctgtcctcttcacgctgccttgctcaggaacata
tatgccttcataacaggcatgcaacaacacatg
gaattcatttccaaagttgaggctcatcctgtgtctctcaagacttcacc
caggctgctttgcgcccatcttttctttttcttttaatacctcttaatgc
tatgggaatggttgtctgtcagaaagggtttggtattgtcatttagtcga
tgaagatggccaaagtatcaacagctgttaggagatgtgacatttcagga
tatttttctctggaaaaaggaatatttcaaaatgttgaagttggaatctc
gagcaatacatgattggcagagtacatgacactaggaagcactgaatgaa
ggctctgcaggagcaggaagcgtgtcctgaaggttccacagaggcatggg
ccactgctttggggatggaccagcacgcccaagcggtgtgcagtgccttt
cccctgaaagtgccactctcctggctggtatcggagaaagagcttcctga
gctggatgtagtgtctgtcacagggtcatgctctaccgtctggcttcatg
gcagagaccggattcctcctcataccattcttacactaatcaagtcatgt
caaaacaaaaccaaaaacaagtagagatcaatattttaactgcttttgtt
aatgattttctaccttgaaaatggacttcttttctagttcctcaggtagc
ccagcaaggagagcaagttcaacacgtgaccctggctaggctgtgtggct
ctgactctcagtttccacatctttaactaggggcatcatggttcttactg
tatcagggcttggtgacaattccaggagctaacactggtaaagaatgggc
atgttagctcttaccagtgcagtgatgagatgtgttcctgggatgtctgt
gctaagagtgttgacctgtgttacccacagtaggagcaagggggtagggt
gtgggaaatcaagtgttccctagaacaccgtacacagataggatgccctg
agcttgtgttggccaagcatatatggctgtatcttggaggatttatttca
tcgtccatgtgcaatgactgtgggagtgcatgctgtatggaccttgtgtt
caagtttcctaatgtcttggcatccagagccctcgccctaggctcgcctc
tcgattgcaacttcaggctccgaatgtaatgtgtgtctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_29412099_29413124
seq2: B6Ng01-186C11.b_44_1076 (reverse)

seq1  CATGTG-TGTTGCATGCCTG-TATGAAGGCATATATGTTCCTGAGC-AGG  47
      |||||| ||||||||||||| ||||||||||||||||||||||||| |||
seq2  CATGTGTTGTTGCATGCCTGTTATGAAGGCATATATGTTCCTGAGCAAGG  50

seq1  CAGCGTGAAGAGGCCAGGGTTGCACTGGCATGCCTT-CCTTAACTAGTCT  96
      ||||||||||||| ||||| |||||||||||||||| |||||||||||||
seq2  CAGCGTGAAGAGGACAGGGGTGCACTGGCATGCCTTCCCTTAACTAGTCT  100

seq1  CTA-CCTTATTTTAGACTTTGTTTTTACAGGGGTGCACGAGTGTATGCCC  145
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTATTTTAGACTTTGTTTTTACAGGGGTGCACGAGTGTATGCCC  150

seq1  TAGTGCATGTGT-AGAGGTCAGAGGAG-AACTTGTGGGAGCCGGTCCTTT  193
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  TAGTGCATGTGTAAGAGGTCAGAGGAGAAACTTGTGGGAGCCGGTCCTTT  200

seq1  CTGTCACCATATGGCTCCTGGGGATGGACGCCAGTCATCAGGCATGGCCC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCATATGGCTCCTGGGGATGGACGCCAGTCATCAGGCATGGCCC  250

seq1  CAACTGTCCTCACCTGCTGAGCCATCCTGCCAACCTTTGTTTTTTTTTTT  293
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAACTGTCCTCACCTGCTGAGCCATCCTGCCAACCTTTGTATTTTTTTTT  300

seq1  TTTTTTTTTTTTTTTTAAAGATTTATTTATTATTATACATGAATACACTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTAAAGATTTATTTATTATTATACATGAATACACTG  350

seq1  TAGCTGTCTTCAGACGCACCAGAAGAGGGTGTCAGATCTCATTATGGGTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTCTTCAGACGCACCAGAAGAGGGTGTCAGATCTCATTATGGGTG  400

seq1  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAA  450

seq1  GAGCAGTCAGTGCTCTTATCCACTGAGCCATCTTGCCAGCCCCAACCTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCAGTGCTCTTATCCACTGAGCCATCTTGCCAGCCCCAACCTTT  500

seq1  GTTTTTTGAGACAAAGTCTTTCATTAACCACCACTAGCTGGCCATCGAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGAGACAAAGTCTTTCATTAACCACCACTAGCTGGCCATCGAGC  550

seq1  CCCAGGATCCATCAGTCTCCACCCCACCCTCAGCACTAAAGCTACAGATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATCCATCAGTCTCCACCCCACCCTCAGCACTAAAGCTACAGATT  600

seq1  TTTACCCCACAAGCTTCGCTTATTGCTTATTCATGGTTGCTGGGAATCCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCCACAAGCTTCGCTTATTGCTTATTCATGGTTGCTGGGAATCCA  650

seq1  AACTCATGTCCTCCTGCTGCCTAGCACTTCACCCACTGGGCCATTTCGCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGTCCTCCTGCTGCCTAGCACTTCACCCACTGGGCCATTTCGCC  700

seq1  AGCCTATAACCTTGGTCTTATTGGAGGGGAGTAGGGTGCCGGCTGCAGAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATAACCTTGGTCTTATTGGAGGGGAGTAGGGTGCCGGCTGCAGAG  750

seq1  CCAACCACATGCTCCAGGGATCCCTGCTAGCTGTGTGTGCTGAGGTGGCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACATGCTCCAGGGATCCCTGCTAGCTGTGTGTGCTGAGGTGGCC  800

seq1  TGAGAGGTCCCTTGGCGACCCACTGGGAGGAGATGATAGGTTAATGTCCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGTCCCTTGGCGACCCACTGGGAGGAGATGATAGGTTAATGTCCT  850

seq1  CGCCCATCTGAGTCATCACCTCTCTTCAGGGGCCGAATTCTCCAATCCCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCATCTGAGTCATCACCTCTCTTCAGGGGCCGAATTCTCCAATCCCT  900

seq1  GGGGCCTCCTTTGCTCCCCCACACCTTCTCGGTAGCAACAAGACAGGGCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTCCTTTGCTCCCCCACACCTTCTCGGTAGCAACAAGACAGGGCA  950

seq1  TGGACACTCGAAGGACGCATATGCCACATCCCTCCCTCCAGCTCAGCTTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTCGAAGGACGCATATGCCACATCCCTCCCTCCAGCTCAGCTTC  1000

seq1  GCCCATACTGTGGCAAAGATCTGCTCAGAATTC  1026
      |||||||||||||||||||||||||||||||||
seq2  GCCCATACTGTGGCAAAGATCTGCTCAGAATTC  1033

seq1: chr2_29223368_29224507
seq2: B6Ng01-186C11.g_63_1202

seq1  GAATTCATTTCCAAAGTTGAGGCTCATCCTGTGTCTCTCAAGACTTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCAAAGTTGAGGCTCATCCTGTGTCTCTCAAGACTTCACC  50

seq1  CAGGCTGCTTTGCGCCCATCTTTTCTTTTTCTTTTAATACCTCTTAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGCTTTGCGCCCATCTTTTCTTTTTCTTTTAATACCTCTTAATGC  100

seq1  TATGGGAATGGTTGTCTGTCAGAAAGGGTTTGGTATTGTCATTTAGTCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAATGGTTGTCTGTCAGAAAGGGTTTGGTATTGTCATTTAGTCGA  150

seq1  TGAAGATGGCCAAAGTATCAACAGCTGTTAGGAGATGTGACATTTCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGGCCAAAGTATCAACAGCTGTTAGGAGATGTGACATTTCAGGA  200

seq1  TATTTTTCTCTGGAAAAAGGAATATTTCAAAATGTTGAAGTTGGAATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTCTGGAAAAAGGAATATTTCAAAATGTTGAAGTTGGAATCTC  250

seq1  GAGCAATACATGATTGGCAGAGTACATGACACTAGGAAGCACTGAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATACATGATTGGCAGAGTACATGACACTAGGAAGCACTGAATGAA  300

seq1  GGCTCTGCAGGAGCAGGAAGCGTGTCCTGAAGGTTCCACAGAGGCATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCAGGAGCAGGAAGCGTGTCCTGAAGGTTCCACAGAGGCATGGG  350

seq1  CCACTGCTTTGGGGATGGACCAGCACGCCCAAGCGGTGTGCAGTGCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTTTGGGGATGGACCAGCACGCCCAAGCGGTGTGCAGTGCCTTT  400

seq1  CCCCTGAAAGTGCCACTCTCCTGGCTGGTATCGGAGAAAGAGCTTCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAAAGTGCCACTCTCCTGGCTGGTATCGGAGAAAGAGCTTCCTGA  450

seq1  GCTGGATGTAGTGTCTGTCACAGGGTCATGCTCTACCGTCTGGCTTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATGTAGTGTCTGTCACAGGGTCATGCTCTACCGTCTGGCTTCATG  500

seq1  GCAGAGACCGGATTCCTCCTCATACCATTCTTACACTAATCAAGTCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACCGGATTCCTCCTCATACCATTCTTACACTAATCAAGTCATGT  550

seq1  CAAAACAAAACCAAAAACAAGTAGAGATCAATATTTTAACTGCTTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACCAAAAACAAGTAGAGATCAATATTTTAACTGCTTTTGTT  600

seq1  AATGATTTTCTACCTTGAAAATGGACTTCTTTTCTAGTTCCTCAGGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTTCTACCTTGAAAATGGACTTCTTTTCTAGTTCCTCAGGTAGC  650

seq1  CCAGCAAGGAGAGCAAGTTCAACACGTGACCCTGGCTAGGCTGTGTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGGAGAGCAAGTTCAACACGTGACCCTGGCTAGGCTGTGTGGCT  700

seq1  CTGACTCTCAGTTTCCACATCTTTAACTAGGGGCATCATGGTTCTTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTCAGTTTCCACATCTTTAACTAGGGGCATCATGGTTCTTACTG  750

seq1  TATCAGGGCTTGGTGACAATTCCAGGAGCTAACACTGGTAAAGAATGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGGCTTGGTGACAATTCCAGGAGCTAACACTGGTAAAGAATGGGC  800

seq1  ATGTTAGCTCTTACCAGTGCAGTGATGAGATGTGTTCCTGGGATGTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCTCTTACCAGTGCAGTGATGAGATGTGTTCCTGGGATGTCTGT  850

seq1  GCTAAGAGTGTTGACCTGTGTTACCCACAGTAGGAGCAAGGGGGTAGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAGTGTTGACCTGTGTTACCCACAGTAGGAGCAAGGGGGTAGGGT  900

seq1  GTGGGAAATCAAGTG-TCCCAGGAACACCGTACAACAGATAGGATG-CCT  948
      ||||||||||||||| ||||  ||||||||||| |||||||||||| |||
seq2  GTGGGAAATCAAGTGTTCCCTAGAACACCGTAC-ACAGATAGGATGCCCT  949

seq1  GAGC-TGTGTTGGCCAAGGCATATTAATGGCTGTTTTCTGGAGGATTTAT  997
      |||| |||||||||||| ||||||  |||||||| |  ||||||||||||
seq2  GAGCTTGTGTTGGCCAA-GCATAT--ATGGCTGTATCTTGGAGGATTTAT  996

seq1  TTCCATCGT-CATGTGCAAATGACTGTGGGAGTGCAGGCTGTAATGGACC  1046
      || |||||| ||||||| |||||||||||||||||| ||||| |||||||
seq2  TT-CATCGTCCATGTGC-AATGACTGTGGGAGTGCATGCTGT-ATGGACC  1043

seq1  TTGTGTTTAAAGTTTCTATTGTCTTGGCTTCGCAGAGCCC-CG-CCTAGG  1094
      ||||||| ||  || ||| ||||||||| || |||||||| || ||||||
seq2  TTGTGTTCAAGTTTCCTAATGTCTTGGCATC-CAGAGCCCTCGCCCTAGG  1092

seq1  CCCGCCCCTCAGATTGCCTC-TCAGGCTCCAGAGGTA--GTGTGTCTCT  1140
      | |||| ||| ||||||  | |||||||||  | |||  ||||||||||
seq2  CTCGCCTCTC-GATTGCAACTTCAGGCTCCGAATGTAATGTGTGTCTCT  1140