BAC Information

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BAC

Clone NameB6Ng01-186H21
Chromosome2 (Build37)
Map Location 119,600,262 - 119,780,461
singlet/doubletdoublet
Overlap geneRpap1, Tyro3, 6330405D24Rik, LOC625403, Mga
Upstream geneDisp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk
Downstream geneMapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186H21.bB6Ng01-186H21.g
ACCGA011321GA011322
length1,114635
definitionB6Ng01-186H21.b B6Ng01-186H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,600,262 - 119,601,365)(119,779,828 - 119,780,461)
sequence
gaattccatgtggaagcatcagtagagtggtcagaagagggagaggcaga
gcttgggggtctacggactgcctggccaagcgcaaggcctaggacctcag
tcagtgagcaaaggagggctggaaactttccaaggtgaaggacagcttga
gttaggccagaggaaaccaggatggcagctcgtgagggagggaacagcct
gagggaaagcatgcaaggcctggctcttgagttacaggaaggtaggatgt
caacagaaggagcagcatcttgactctaagaaactgagtgacagcaaggc
cctgagctagggcgggacacacaggaggtcaaaggcaagtgaccagagct
ccaagttttgcacagtttttgcagttgctaaacgtttgccaagagttgcc
cagtcctcctaggaccccatcccttacctcggcctcttctccgtggtggt
gcaggcccagatgtgtgggaagatccacatcaggcgccaggagctcgccc
tgaaggctgaatcgagcctgcattctctaagacaaaagaaatggactgtg
ttgggtgctgcagcagttcctcacactcagtcacctttaatctcaagcct
tttaggattagctctgggctcttcctctcactggaaacgaggcttgtggg
gcctatagggccaggcagggtgacaggagagaagctgagaacaaataaga
gctatttctcaggccccaggtctgggcagaagagcagtaaccccacccca
ccccacctgttcgtcctcacctcctgtgtctgctgccgccggagtggggg
caggtcctgggtccagtggagcttgtccagctctacggtgtccatgtgga
gccagtctttgctgggggtcatgggcagtttcagtgctagggaaggcaga
aagcactgcgttcctcaagggctcagcacactgggcagaaagcagctgcc
ctcagctatggctaaatgggtacggcttggggggctggccaccccctaag
caactggatgaaatgttttcacttatagcaactatagcaaacaatagctg
gtctggctctagctccatgctgaccttcaagaccgtgtttgagagaaaaa
aagaaaatggaaga
gaattcatggaggaactccagacaacaagatgctagaaggtaagacagtc
caggagtataaaaggtgcaggaagccgtacccaatttaagggaaagagaa
tcattgttgttaggtgccatctcagttgtggataagctgagagagcaaca
gaaagatatcagaaacctgagaatcctgggaaagacattgggaaaagtgg
agatgctaataataataataataataataataataataataataataata
ataataatatcacaacagtagcatggctacagaaagcacccagggcagct
tcaaaactatataattaatagctaaacaaatggggatccccagttgctag
tcaactggctctttaagaattcttagctgttagaactgtttgacactaca
gtgttggttgctttttggatttctgggaataggacacgatataaaatagc
cagctgatcctaagaaggcagagtgggagtggggtagggttagggctacc
agaatgaaagcaaaggcagttggtggcagaagacatcgttaggagacagt
tgaggcaggaaaagccgagctgaagagataggctagaatagttgttatag
ttttggagctgctggtattgggggaagggattgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119600262_119601365
seq2: B6Ng01-186H21.b_44_1157

seq1  GAATTCCATGTGGAAGCATCAGTAGAGTGGTCAGAAGAGGGAGAGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGGAAGCATCAGTAGAGTGGTCAGAAGAGGGAGAGGCAGA  50

seq1  GCTTGGGGGTCTACGGACTGCCTGGCCAAGCGCAAGGCCTAGGACCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGGTCTACGGACTGCCTGGCCAAGCGCAAGGCCTAGGACCTCAG  100

seq1  TCAGTGAGCAAAGGAGGGCTGGAAACTTTCCAAGGTGAAGGACAGCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGCAAAGGAGGGCTGGAAACTTTCCAAGGTGAAGGACAGCTTGA  150

seq1  GTTAGGCCAGAGGAAACCAGGATGGCAGCTCGTGAGGGAGGGAACAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCCAGAGGAAACCAGGATGGCAGCTCGTGAGGGAGGGAACAGCCT  200

seq1  GAGGGAAAGCATGCAAGGCCTGGCTCTTGAGTTACAGGAAGGTAGGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAGCATGCAAGGCCTGGCTCTTGAGTTACAGGAAGGTAGGATGT  250

seq1  CAACAGAAGGAGCAGCATCTTGACTCTAAGAAACTGAGTGACAGCAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAGGAGCAGCATCTTGACTCTAAGAAACTGAGTGACAGCAAGGC  300

seq1  CCTGAGCTAGGGCGGGACACACAGGAGGTCAAAGGCAAGTGACCAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTAGGGCGGGACACACAGGAGGTCAAAGGCAAGTGACCAGAGCT  350

seq1  CCAAGTTTTGCACAGTTTTTGCAGTTGCTAAACGTTTGCCAAGAGTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTTGCACAGTTTTTGCAGTTGCTAAACGTTTGCCAAGAGTTGCC  400

seq1  CAGTCCTCCTAGGACCCCATCCCTTACCTCGGCCTCTTCTCCGTGGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCCTAGGACCCCATCCCTTACCTCGGCCTCTTCTCCGTGGTGGT  450

seq1  GCAGGCCCAGATGTGTGGGAAGATCCACATCAGGCGCCAGGAGCTCGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCCAGATGTGTGGGAAGATCCACATCAGGCGCCAGGAGCTCGCCC  500

seq1  TGAAGGCTGAATCGAGCCTGCATTCTCTAAGACAAAAGAAATGGACTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTGAATCGAGCCTGCATTCTCTAAGACAAAAGAAATGGACTGTG  550

seq1  TTGGGTGCTGCAGCAGTTCCTCACACTCAGTCACCTTTAATCTCAAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGCTGCAGCAGTTCCTCACACTCAGTCACCTTTAATCTCAAGCCT  600

seq1  TTTAGGATTAGCTCTGGGCTCTTCCTCTCACTGGAAACGAGGCTTGTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATTAGCTCTGGGCTCTTCCTCTCACTGGAAACGAGGCTTGTGGG  650

seq1  GCCTATAGGGCCAGGCAGGGTGACAGGAGAGAAGCTGAGAACAAATAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAGGGCCAGGCAGGGTGACAGGAGAGAAGCTGAGAACAAATAAGA  700

seq1  GCTATTTCTCAGGCCCCAGGTCTGGGCAGAAGAGCAGTAACCCCACCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCTCAGGCCCCAGGTCTGGGCAGAAGAGCAGTAACCCCACCCCA  750

seq1  CCCCACCTGTTCGTCCTCACCTCCTGTGTCTGCTGCCGCCGGAGTGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTGTTCGTCCTCACCTCCTGTGTCTGCTGCCGCCGGAGTGGGGG  800

seq1  CAGGTCCTGGGTCCAGTGGAGCTTGTCCAGCTCTACGGTGTCCATGTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTGGGTCCAGTGGAGCTTGTCCAGCTCTACGGTGTCCATGTGGA  850

seq1  GCCAGTCTTTGCTGGGGGTCATGGGCAGTTTCAGTGCTAGGG-AGGCAG-  898
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  GCCAGTCTTTGCTGGGGGTCATGGGCAGTTTCAGTGCTAGGGAAGGCAGA  900

seq1  AAGCACTGCGTTCCTCAAGGGGCTCAGCACACT-GGCAGAAAGCAGCTG-  946
      |||||||||||||||||| |||||||||||||| ||||||||||||||| 
seq2  AAGCACTGCGTTCCTCAA-GGGCTCAGCACACTGGGCAGAAAGCAGCTGC  949

seq1  CCTCAGCTATGGCTAAAT-GGTACGGCTT-GGGGGCTGG-CACCCC--TA  991
      |||||||||||||||||| |||||||||| ||||||||| ||||||   |
seq2  CCTCAGCTATGGCTAAATGGGTACGGCTTGGGGGGCTGGCCACCCCCTAA  999

seq1  GCAACTGGATG-AATG-TTTCAACTATAGCAACTATAGCAAAC-ATAGCT  1038
      ||||||||||| |||| |||||  ||||||||||||||||||| ||||||
seq2  GCAACTGGATGAAATGTTTTCACTTATAGCAACTATAGCAAACAATAGCT  1049

seq1  GGTCCTGGCTCTAGCCCCATGCTGACCTCAAAGA-CGTGTTTGA-AGAAG  1086
      ||| ||||||||||| ||||||||||||  |||| ||||||||| |||| 
seq2  GGT-CTGGCTCTAGCTCCATGCTGACCTTCAAGACCGTGTTTGAGAGAAA  1098

seq1  AAGAGAAGAAAAGGAAGA  1104
      || |||  ||| ||||||
seq2  AAAAGA--AAATGGAAGA  1114

seq1: chr2_119779828_119780461
seq2: B6Ng01-186H21.g_65_699 (reverse)

seq1  AACAATCCCTTCCCCCAATACCAGCAGCTCC-AAACTATAACAACTATTC  49
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACAATCCCTTCCCCCAATACCAGCAGCTCCAAAACTATAACAACTATTC  50

seq1  TAGCCTATCTCTTCAGCTCGGCTTTTCCTGCCTCAACTGTCTCCTAACGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTATCTCTTCAGCTCGGCTTTTCCTGCCTCAACTGTCTCCTAACGA  100

seq1  TGTCTTCTGCCACCAACTGCCTTTGCTTTCATTCTGGTAGCCCTAACCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTGCCACCAACTGCCTTTGCTTTCATTCTGGTAGCCCTAACCCT  150

seq1  ACCCCACTCCCACTCTGCCTTCTTAGGATCAGCTGGCTATTTTATATCGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACTCCCACTCTGCCTTCTTAGGATCAGCTGGCTATTTTATATCGT  200

seq1  GTCCTATTCCCAGAAATCCAAAAAGCAACCAACACTGTAGTGTCAAACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATTCCCAGAAATCCAAAAAGCAACCAACACTGTAGTGTCAAACAG  250

seq1  TTCTAACAGCTAAGAATTCTTAAAGAGCCAGTTGACTAGCAACTGGGGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAGCTAAGAATTCTTAAAGAGCCAGTTGACTAGCAACTGGGGAT  300

seq1  CCCCATTTGTTTAGCTATTAATTATATAGTTTTGAAGCTGCCCTGGGTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTGTTTAGCTATTAATTATATAGTTTTGAAGCTGCCCTGGGTGC  350

seq1  TTTCTGTAGCCATGCTACTGTTGTGATATTATTATTATTATTATTATTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAGCCATGCTACTGTTGTGATATTATTATTATTATTATTATTAT  400

seq1  TATTATTATTATTATTATTATTATTATTAGCATCTCCACTTTTCCCAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTATTATTATTATTAGCATCTCCACTTTTCCCAATG  450

seq1  TCTTTCCCAGGATTCTCAGGTTTCTGATATCTTTCTGTTGCTCTCTCAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCAGGATTCTCAGGTTTCTGATATCTTTCTGTTGCTCTCTCAGC  500

seq1  TTATCCACAACTGAGATGGCACCTAACAACAATGATTCTCTTTCCCTTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACAACTGAGATGGCACCTAACAACAATGATTCTCTTTCCCTTAA  550

seq1  ATTGGGTACGGCTTCCTGCACCTTTTATACTCCTGGACTGTCTTACCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTACGGCTTCCTGCACCTTTTATACTCCTGGACTGTCTTACCTTC  600

seq1  TAGCATCTTGTTGTCTGGAGTTCCTCCATGAATTC  634
      |||||||||||||||||||||||||||||||||||
seq2  TAGCATCTTGTTGTCTGGAGTTCCTCCATGAATTC  635