BAC Information

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BAC

Clone NameB6Ng01-186M02
Chromosome2 (Build37)
Map Location 158,421,966 - 158,567,125
singlet/doubletdoublet
Overlap geneSlc32a1, Actr5, Ppp1r16b
Upstream geneCtnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481
Downstream gene2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186M02.bB6Ng01-186M02.g
ACCGA011515GA011516
length1,093413
definitionB6Ng01-186M02.b B6Ng01-186M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,421,966 - 158,423,065)(158,566,707 - 158,567,125)
sequence
gaattccaggacagccagggctatacagagaaaccctgtctcaacaaact
aaaacaatacaaaacaaccaaacaaacaaacaaatgaacaaaagaacata
acagagggcaggagaaacagctcagtagatagaagtgcttactggacaag
tgtgatgatgtagttccctcccaggatccacgtagcagaaggagagagtc
aactggcacctgaacattgtcctccgaccttcatgtgcacagtgtggaac
acacacgcctatgcacaagcattcttgcccacactagaacaaaggaagac
aatggactttttttttctttttttggttgattccccagagacccacttaa
attctgataatgaatttgctttttataaaacttagtccttgggaggtaga
ggaaggtcaggggtttgaggccagctaatactgcctatgctccatgagac
tgtcaaaaacagaaaggaaggagagataaaaatgtcttgtgatgaactta
tcccatgctgtacagtgccccaaggtccccacaggtggactttgggggtt
gggaagagaggttttgctacctggacagaagccattttgtcattatgctc
ccaccatcccatcccactgtctgcacattaaactctaaatttccagtacc
ctaaaataaataaataaataaaaaacctagccccaccccctgttagagtt
ctagctggaccattactgcttctgaatggggaagagttggttccccctga
catttaggctcagaagggaagaaaagaggaactccagtcacattggtgac
atagacacttaaggcactgatatgaaaagtcagctaaggcttccctaccc
tcagtcatggctcactgggggctgctacgtctgctccattttctcaagga
aagagagtgtcttagagtttactgctgtgaacagacatcatgactcatca
gtcttataaagaataacatttattggggctggcttacagttcagaggttc
agtccattatcttcaggcagagcatggcagcatccaggtaggcatggtgc
aggaggagctgacagttctacatcttcatcctgaagctctgct
ccgcaggactaacccttgggggctacaggctggccgtggaagacaaagct
tctatgtgggtggtgacagccaaggccatccccaggcagggagggatgtc
accacattcccttggaaaggacatgtgttcgatagcacccacttcatggc
cataggtcttggccatgtgaccttagacaacaaaacagtcagtcggcttt
gtcctcagggcgagtgggatgtcctggtggccgtgaatactctctgtcaa
ttctcaacttctacaatgaattttctcagctgcctgtgaggacacagtga
acaaagaacccctgtcctcagagcctgtgaccgcgcacatgtgcacaacc
aggagcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_158421966_158423065
seq2: B6Ng01-186M02.b_43_1135

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAACAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAACAAACT  50

seq1  AAAACAATACAAAACAACCAAACAAACAAACAAATGAACAAAAGAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATACAAAACAACCAAACAAACAAACAAATGAACAAAAGAACATA  100

seq1  ACAGAGGGCAGGAGAAACAGCTCAGTAGATAGAAGTGCTTACTGGACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGGCAGGAGAAACAGCTCAGTAGATAGAAGTGCTTACTGGACAAG  150

seq1  TGTGATGATGTAGTTCCCTCCCAGGATCCACGTAGCAGAAGGAGAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGATGTAGTTCCCTCCCAGGATCCACGTAGCAGAAGGAGAGAGTC  200

seq1  AACTGGCACCTGAACATTGTCCTCCGACCTTCATGTGCACAGTGTGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCACCTGAACATTGTCCTCCGACCTTCATGTGCACAGTGTGGAAC  250

seq1  ACACACGCCTATGCACAAGCATTCTTGCCCACACTAGAACAAAGGAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGCCTATGCACAAGCATTCTTGCCCACACTAGAACAAAGGAAGAC  300

seq1  AATGGACTTTTTTTTTCTTTTTTTGGTTGATTCCCCAGAGACCCACTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTTTTTTTTTCTTTTTTTGGTTGATTCCCCAGAGACCCACTTAA  350

seq1  ATTCTGATAATGAATTTGCTTTTTATAAAACTTAGTCCTTGGGAGGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATAATGAATTTGCTTTTTATAAAACTTAGTCCTTGGGAGGTAGA  400

seq1  GGAAGGTCAGGGGTTTGAGGCCAGCTAATACTGCCTATGCTCCATGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCAGGGGTTTGAGGCCAGCTAATACTGCCTATGCTCCATGAGAC  450

seq1  TGTCAAAAACAGAAAGGAAGGAGAGATAAAAATGTCTTGTGATGAACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAACAGAAAGGAAGGAGAGATAAAAATGTCTTGTGATGAACTTA  500

seq1  TCCCATGCTGTACAGTGCCCCAAGGTCCCCACAGGTGGACTTTGGGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGCTGTACAGTGCCCCAAGGTCCCCACAGGTGGACTTTGGGGGTT  550

seq1  GGGAAGAGAGGTTTTGCTACCTGGACAGAAGCCATTTTGTCATTATGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGAGGTTTTGCTACCTGGACAGAAGCCATTTTGTCATTATGCTC  600

seq1  CCACCATCCCATCCCACTGTCTGCACATTAAACTCTAAATTTCCAGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATCCCATCCCACTGTCTGCACATTAAACTCTAAATTTCCAGTACC  650

seq1  CTAAAATAAATAAATAAATAAAAAACCTAGCCCCACCCCCTGTTAGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAAATAAATAAATAAAAAACCTAGCCCCACCCCCTGTTAGAGTT  700

seq1  CTAGCTGGACCATTACTGCTTCTGAATGGGGAAGAGTTGGTTCCCCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGGACCATTACTGCTTCTGAATGGGGAAGAGTTGGTTCCCCCTGA  750

seq1  CATTTAGGCTCAGGAAGGGAAGAAAAGAGGAACTCCAGTCACATTGGTGA  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATTTAGGCTCA-GAAGGGAAGAAAAGAGGAACTCCAGTCACATTGGTGA  799

seq1  CATAGGACACTTAAGGCACTGATATG-AAAGTCAGCTAAGGCTTCCCTAC  849
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATA-GACACTTAAGGCACTGATATGAAAAGTCAGCTAAGGCTTCCCTAC  848

seq1  CCTCAGTCATGGCTCACTGGGGGCTGCTACGTCTGCTCCATTTTCTCCAA  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTCAGTCATGGCTCACTGGGGGCTGCTACGTCTGCTCCATTTTCT-CAA  897

seq1  GGAAAGAGAGTGTCTTAGAGTTTTACTGCTGTGAACAGACATCATGACTC  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAAAGAGAGTGTCTTAGAG-TTTACTGCTGTGAACAGACATCATGACTC  946

seq1  AGTCAAGTCTTATAAAGAATAACATTTAATTGGGGCTGGCTTACAGGTTC  999
      | || |||||||||||||||||||||| ||||||||||||||||| ||||
seq2  A-TC-AGTCTTATAAAGAATAACATTT-ATTGGGGCTGGCTTACA-GTTC  992

seq1  AGAGGTTCAGTCCATTATCTTCAAGGCAGAAGCATGGCAGCATCCAGGTA  1049
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  AGAGGTTCAGTCCATTATCTTC-AGGCAG-AGCATGGCAGCATCCAGGTA  1040

seq1  GGCATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCAT-CTGAAG-GCT  1097
      |||||||||||||||||||||| |||||||||||||||| ||||||  ||
seq2  GGCATGGTGCAGGAGGAGCTGACAGTTCTACATCTTCATCCTGAAGCTCT  1090

seq1  GCT  1100
      |||
seq2  GCT  1093

seq1: chr2_158566707_158567125
seq2: B6Ng01-186M02.g_66_484 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACACACA  50

seq1  CACACAAGCTCCTGGTTGTGCACATGTGCGCGGTCACAGGCTCTGAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGCTCCTGGTTGTGCACATGTGCGCGGTCACAGGCTCTGAGGAC  100

seq1  AGGGGTTCTTTGTTCACTGTGTCCTCACAGGCAGCTGAGAAAATTCATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTCTTTGTTCACTGTGTCCTCACAGGCAGCTGAGAAAATTCATTG  150

seq1  TAGAAGTTGAGAATTGACAGAGAGTATTCACGGCCACCAGGACATCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTGAGAATTGACAGAGAGTATTCACGGCCACCAGGACATCCCAC  200

seq1  TCGCCCTGAGGACAAAGCCGACTGACTGTTTTGTTGTCTAAGGTCACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCTGAGGACAAAGCCGACTGACTGTTTTGTTGTCTAAGGTCACATG  250

seq1  GCCAAGACCTATGGCCATGAAGTGGGTGCTATCGAACACATGTCCTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGACCTATGGCCATGAAGTGGGTGCTATCGAACACATGTCCTTTCC  300

seq1  AAGGGAATGTGGTGACATCCCTCCCTGCCTGGGGATGGCCTTGGCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATGTGGTGACATCCCTCCCTGCCTGGGGATGGCCTTGGCTGTCA  350

seq1  CCACCCACATAGAAGCTTTGTCTTCCACGGCCAGCCTGTAGCCCCCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACATAGAAGCTTTGTCTTCCACGGCCAGCCTGTAGCCCCCAAGG  400

seq1  GTTAGTCCTGCGGGAATTC  419
      |||||||||||||||||||
seq2  GTTAGTCCTGCGGGAATTC  419