BAC Information

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BAC

Clone NameB6Ng01-187L09
Chromosome2 (Build37)
Map Location 152,461,978 - 152,597,011
singlet/doubletdoublet
Overlap geneH13, Mcts2, Id1, LOC629170, Cox4i2
Upstream geneLOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1
Downstream geneBcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187L09.bB6Ng01-187L09.g
ACCGA012212GA012213
length313519
definitionB6Ng01-187L09.b B6Ng01-187L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,596,699 - 152,597,011)(152,461,978 - 152,462,502)
sequence
ttgatcacaagaacaacaacatctttagaaattacatcaggctttgttgg
acaattatcccatttttgtgtaatctcagaagtcaagccaaagtgtcctg
ctacctccatggagggtacctctgtgaatagaatcccttctgctcccagt
aaaacaggtttgccagcttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtaacatatacgacatatacaaggccctgatccatcttca
gcagtacataaaaataagtaaataaataatacaaaaagaagcattgagta
gctttacctgccg
catggaactcggtccattaatcccaggatggacactaatttagttcagtg
cattcatcttccaaatgtggaaaatgaagccctgagacaggcagagagta
ctccagagtcacccagtcagtgagtttcggggccctcaagatccagcccc
ctcctctgacctcccttggctgtgagggatgagggacacagtgaagcttc
ccgcctggctgaggacccagctgggtgtaggggtcgggtcaggagtttcc
atctcggggaggatgggggaggagggactgtcactactttgagaagagaa
caagatgcaaactgtttagaccacactgcctcatacttctgacacccctg
cctccaaccaactgcccaccaccagactcctggtccctacacggaagtca
cccgtgacccactccagaggatgaggcacagaaaaaaaatcatacttcga
ggtgcccagttccccaatgctcaccgccaactcactggtcaccagtcatg
cccaggaagcggaggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152596699_152597011
seq2: B6Ng01-187L09.b_52_364 (reverse)

seq1  CGGCAGGTAAAGCTACTCAATGCTTCTTTTTGTATTATTTATTTACTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGGTAAAGCTACTCAATGCTTCTTTTTGTATTATTTATTTACTTAT  50

seq1  TTTTATGTACTGCTGAAGATGGATCAGGGCCTTGTATATGTCGTATATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTACTGCTGAAGATGGATCAGGGCCTTGTATATGTCGTATATGT  100

seq1  TACACACACACACACACACACACACACACACACACACACACACGAAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACACACACACACACACACACGAAGCTG  150

seq1  GCAAACCTGTTTTACTGGGAGCAGAAGGGATTCTATTCACAGAGGTACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCTGTTTTACTGGGAGCAGAAGGGATTCTATTCACAGAGGTACCC  200

seq1  TCCATGGAGGTAGCAGGACACTTTGGCTTGACTTCTGAGATTACACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGAGGTAGCAGGACACTTTGGCTTGACTTCTGAGATTACACAAAA  250

seq1  ATGGGATAATTGTCCAACAAAGCCTGATGTAATTTCTAAAGATGTTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATAATTGTCCAACAAAGCCTGATGTAATTTCTAAAGATGTTGTTG  300

seq1  TTCTTGTGATCAA  313
      |||||||||||||
seq2  TTCTTGTGATCAA  313

seq1: chr2_152461978_152462502
seq2: B6Ng01-187L09.g_61_585

seq1  GAATTCCATGGAACTCGGTCCATTAATCCCAGGATGGACACTAATTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGAACTCGGTCCATTAATCCCAGGATGGACACTAATTTAGT  50

seq1  TCAGTGCATTCATCTTCCAAATGTGGAAAATGAAGCCCTGAGACAGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCATTCATCTTCCAAATGTGGAAAATGAAGCCCTGAGACAGGCAG  100

seq1  AGAGTACTCCAGAGTCACCCAGTCAGTGAGTTTCGGGGCCCTCAAGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTCCAGAGTCACCCAGTCAGTGAGTTTCGGGGCCCTCAAGATCC  150

seq1  AGCCCCCTCCTCTGACCTCCCTTGGCTGTGAGGGATGAGGGACACAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTCCTCTGACCTCCCTTGGCTGTGAGGGATGAGGGACACAGTGA  200

seq1  AGCTTCCCGCCTGGCTGAGGACCCAGCTGGGTGTAGGGGTCGGGTCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCGCCTGGCTGAGGACCCAGCTGGGTGTAGGGGTCGGGTCAGGA  250

seq1  GTTTCCATCTCGGGGAGGATGGGGGAGGAGGGACTGTCACAACTTTGAGA  300
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTTCCATCTCGGGGAGGATGGGGGAGGAGGGACTGTCACTACTTTGAGA  300

seq1  AGAGAACAAGATGCAAACTGTTTAGACCACACTGCCTCATACTTCTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAAGATGCAAACTGTTTAGACCACACTGCCTCATACTTCTGACA  350

seq1  CCCCTGCCTCCAACCAACTGCCCACCACCAGACTCCTGGTCCCTACACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCTCCAACCAACTGCCCACCACCAGACTCCTGGTCCCTACACGG  400

seq1  AAGTCACCCGTGACCCAGTCCAGAGGATGAGGCACAGAAAAAAAATCATA  450
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGTCACCCGTGACCCACTCCAGAGGATGAGGCACAGAAAAAAAATCATA  450

seq1  CTTCGAGGTGCCCAGTTCCCCAATGCTCACCGCCAACTCACTGGTCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAGGTGCCCAGTTCCCCAATGCTCACCGCCAACTCACTGGTCACCA  500

seq1  GTCATGCCCAGGAAGCGGAGGAGGG  525
      |||||||||||||||||||||||||
seq2  GTCATGCCCAGGAAGCGGAGGAGGG  525