BAC Information

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BAC

Clone NameB6Ng01-187M05
Chromosome2 (Build37)
Map Location 6,595,847 - 6,731,895
singlet/doubletdoublet
Overlap geneCugbp2, LOC100040659
Upstream geneCamk1d, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387
Downstream geneLOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187M05.bB6Ng01-187M05.g
ACCGA012252GA012253
length1,1121,053
definitionB6Ng01-187M05.b B6Ng01-187M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,595,847 - 6,596,966)(6,730,868 - 6,731,895)
sequence
gaattccagtggcagagagactaggtttaactgctatccatttccacaca
aacctcaacttcagcacactggattattagacgcttgtaggtcaggccat
tttcttcaatcttgtggttttgtttagttggtatattaactccattcaca
agaacacaggccctctaatgctagtctggctaaactacaacctagcctca
tgcctagtctgcaccagttgcaacagtgctcttttattatcatgttcaat
gggtgacttcttggatactggtgtctgagctctgcaagggggacttgtaa
tacaaacagaacaatgctggttttgattttaaggatctgctaccctttct
tccacactttggcctttatataataaaacaaagacagaaatcctttggct
atggaaaccatgttaactgaagtaaagactgtacttactgcagactttct
gaacccttgagttaatatttgcaaacactattataatagtttccacccca
ttccaaagaattaagtaagccatttaaaatggtggaaatcaggtaagaaa
tacatttaggagccatgtggaaaatttcctttaattttcatggttgatgt
gacagttttctaagtactacttgttatttctctatttcattcatgatctt
tccagcaaatctcatgtattatatgacatcctgtgctctaactacccaca
ttccctgattaaaagaggctaccagatatcctgttgtcagactcataggt
ttgggaaattattcaagatggcaaaatggtgttcctgggacactacaagg
caagcaaatcaagaaaacaagctactcttctttagcctgtgaattagata
cggatgtctgcatctaattgtggcatcagcaaatagaatcttgatgttac
tcaggtttggtcataatgcccaccaccactagataacacatctggtatat
cagcaaagacacctatttccagaaaggcacccaattaggacattacttta
atgacattgtcttcacagtgttctcaggtggcagctagcatgacgtactg
ggacaaacctgtctctgcaagaactgtaagtgctctaaactctgagcatt
cctttccagatc

gaattcagaggtagtagtcagcactaggctgtagtaggaagtgaacatag
tccttctaggtctctggaggattataagaggtgaaaagtcaacaaataat
tctaagtagaggagctagcattttaaaaaagagatgagctcatttgaggt
ggcttttgaaatatgtaaatggtattgaagtaggcacccctttccccatg
agggaaagatccctatgagagctctgaactgaagatgtatggttatgatt
tacctgtttttagtttggttggaaatcttaatttaacaatattcaataag
cctgtgaggtgtaaaatgagagaagacccagtacctggtaccctggccac
cagaaagaggcagatgatcttgtaactgaggctgagaaaagtgcactggc
atagatgaactcaccagaattttaagtgaaggaagacagcagttaatatt
agggtgaggggtcaagtaagagggaagctttaaaagttcttgaattgctc
aacatgaagatatttgatacatgcagaaataattcagtagggtagtatgg
tttcaggcatctatgaaataggaggtgaaatagttaagtcaggttttagt
ttttttgtttgtttttgagaaatttggctgtttaaatgaagaaaagagag
tagtatcaagtgggcagatgtaacagtgaatctgttcattttcatgttta
tgttttgttttagtttaatgtattaatttttaatttgctttaatttaaat
cagtatacatgtataagctacttgaatgctcatgttttttgaacattcaa
atttcagagtttcctttgaattctccctaaccttgtatggtaagatataa
gagaatattctgatatttcaaatagaggggtaatgaggctgtattgggac
tagcatccagccattagttacatcaaaatttattgtccataatttgattt
gtttattacaattcaaatggtgatgaaactctgtttaaagatggaacaca
ttttccttttctcgagatcaatcaatttgggaaggaggtagaacgctaag
att
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_6595847_6596966
seq2: B6Ng01-187M05.b_46_1157

seq1  GAATTCCAGTGGCAGAGAGACTAGGTTTAACTGCTATCCATTTCCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGGCAGAGAGACTAGGTTTAACTGCTATCCATTTCCACACA  50

seq1  AACCTCAACTTCAGCACACTGGATTATTAGACGCTTGTAGGTCAGGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAACTTCAGCACACTGGATTATTAGACGCTTGTAGGTCAGGCCAT  100

seq1  TTTCTTCAATCTTGTGGTTTTGTTTAGTTGGTATATTAACTCCATTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCAATCTTGTGGTTTTGTTTAGTTGGTATATTAACTCCATTCACA  150

seq1  AGAACACAGGCCCTCTAATGCTAGTCTGGCTAAACTACAACCTAGCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAGGCCCTCTAATGCTAGTCTGGCTAAACTACAACCTAGCCTCA  200

seq1  TGCCTAGTCTGCACCAGTTGCAACAGTGCTCTTTTATTATCATGTTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGTCTGCACCAGTTGCAACAGTGCTCTTTTATTATCATGTTCAAT  250

seq1  GGGTGACTTCTTGGATACTGGTGTCTGAGCTCTGCAAGGGGGACTTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACTTCTTGGATACTGGTGTCTGAGCTCTGCAAGGGGGACTTGTAA  300

seq1  TACAAACAGAACAATGCTGGTTTTGATTTTAAGGATCTGCTACCCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACAGAACAATGCTGGTTTTGATTTTAAGGATCTGCTACCCTTTCT  350

seq1  TCCACACTTTGGCCTTTATATAATAAAACAAAGACAGAAATCCTTTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTTTGGCCTTTATATAATAAAACAAAGACAGAAATCCTTTGGCT  400

seq1  ATGGAAACCATGTTAACTGAAGTAAAGACTGTACTTACTGCAGACTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACCATGTTAACTGAAGTAAAGACTGTACTTACTGCAGACTTTCT  450

seq1  GAACCCTTGAGTTAATATTTGCAAACACTATTATAATAGTTTCCACCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTTGAGTTAATATTTGCAAACACTATTATAATAGTTTCCACCCCA  500

seq1  TTCCAAAGAATTAAGTAAGCCATTTAAAATGGTGGAAATCAGGTAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGAATTAAGTAAGCCATTTAAAATGGTGGAAATCAGGTAAGAAA  550

seq1  TACATTTAGGAGCCATGTGGAAAATTTCCTTTAATTTTCATGGTTGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTAGGAGCCATGTGGAAAATTTCCTTTAATTTTCATGGTTGATGT  600

seq1  GACAGTTTTCTAAGTACTACTTGTTATTTCTCTATTTCATTCATGATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTTCTAAGTACTACTTGTTATTTCTCTATTTCATTCATGATCTT  650

seq1  TCCAGCAAATCTCATGTATTATATGACATCCTGTGCTCTAACTACCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAAATCTCATGTATTATATGACATCCTGTGCTCTAACTACCCACA  700

seq1  TTCCCTGATTAAAAGAGGCTACCAGATATCCTGTTGTCAGACTCATAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGATTAAAAGAGGCTACCAGATATCCTGTTGTCAGACTCATAGGT  750

seq1  TTGGGAAATTATTCAAGATGGCAAAATGGTGTTCCTGGGACACTACAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAATTATTCAAGATGGCAAAATGGTGTTCCTGGGACACTACAAGG  800

seq1  CAAGCAAATCAAGAAAACAAGCTACTCTTCTTTAGCCTGTGAATTAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAATCAAGAAAACAAGCTACTCTTCTTTAGCCTGTGAATTAGATA  850

seq1  CGGATGTCTGCATCTAATTGTGGCATCAGCAAATAGAATCTTGATGTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGTCTGCATCTAATTGTGGCATCAGCAAATAGAATCTTGATGTTAC  900

seq1  TCAGGTTTGGTCATAATGCCCACCACCACTAGATAACACATCTGGTATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTGGTCATAATGCCCACCACCACTAGATAACACATCTGGTATAT  950

seq1  CAGCAAAGACACCTATTTCCAGAAAGGCACCCCAATTAGGACAATTACTT  1000
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  CAGCAAAGACACCTATTTCCAGAAAGGCA-CCCAATTAGGAC-ATTACTT  998

seq1  TAATTGACA-TGTC-TCACAGTGTTCTCAGGTGGGAAGCTAGCATGAAGG  1048
      ||| ||||| |||| ||||||||||||||||| || |||||||||| | |
seq2  TAA-TGACATTGTCTTCACAGTGTTCTCAGGT-GGCAGCTAGCATG-ACG  1045

seq1  TACTGGGAACCAAACCTTGGTCCTCTGCAAGAACTGTAAGTGCTTCTAAC  1098
      ||||||||  |||||||  || ||||||||||||||||||||| ||||| 
seq2  TACTGGGA--CAAACCT--GT-CTCTGCAAGAACTGTAAGTGC-TCTAAA  1089

seq1  TTCTGAGCCAT-CTCTCCAGATC  1120
       |||||||  | || ||||||||
seq2  CTCTGAGCATTCCTTTCCAGATC  1112


seq1: chr2_6730868_6731895
seq2: B6Ng01-187M05.g_68_1120 (reverse)

seq1  AATCTTAGC--TCTACCTCCT--CCTAAATGATTGATCTC--GGAAAGGA  44
      |||||||||  ||||||||||  || || |||||||||||  | ||||||
seq2  AATCTTAGCGTTCTACCTCCTTCCCAAATTGATTGATCTCGAGAAAAGGA  50

seq1  AA---TGTTCCTTCTTTAAAC--AGTTTCATCA-CATTT-AAATGTAAT-  86
      ||   |||||| |||||||||  |||||||||| ||||| || |||||| 
seq2  AAATGTGTTCCATCTTTAAACAGAGTTTCATCACCATTTGAATTGTAATA  100

seq1  AACAAATC-AATTATGAACAATAAA-TTTGATGTAACT-ATGGCTGGATG  133
      |||||||| ||||||| |||||||| |||||||||||| |||||||||||
seq2  AACAAATCAAATTATGGACAATAAATTTTGATGTAACTAATGGCTGGATG  150

seq1  CCTAGT-CCAATACAGCCTCATTA-CCCTCTATTTG-AATATCAG-ATAT  179
       ||||| ||||||||||||||||| ||||||||||| |||||||| ||||
seq2  -CTAGTCCCAATACAGCCTCATTACCCCTCTATTTGAAATATCAGAATAT  199

seq1  TCTC-TATATCTTACCATAC-AGGTTAGGGAGAATTC-AAGGAAACTCTT  226
      |||| ||||||||||||||| |||||||||||||||| ||||||||||| 
seq2  TCTCTTATATCTTACCATACAAGGTTAGGGAGAATTCAAAGGAAACTCTG  249

seq1  GAATTTGAATGTTC-AAAAACATGAGCATTCAAGTAGCTTATACATGTAT  275
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAATTTGAATGTTCAAAAAACATGAGCATTCAAGTAGCTTATACATGTAT  299

seq1  ACTGATTTAAATTAAAGCAAATT-AAAATTAATACATTAAACTAAAACAA  324
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTGATTTAAATTAAAGCAAATTAAAAATTAATACATTAAACTAAAACAA  349

seq1  AACATAAACATGAAAATGAACAGATTCACTGTTACATCTGCCCACTTGAT  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAACATGAAAATGAACAGATTCACTGTTACATCTGCCCACTTGAT  399

seq1  ACTACTCTCTTTTCTTCATTTAAACAGCCAAATTTCTCAAAAACAAACAA  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTCTTTTCTTCATTTAAACAGCCAAATTTCTCAAAAACAAACAA  449

seq1  AAAAACTAAAACCTGACTTAACTATTTCACCTCCTATTTCATAGATGCCT  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAAAACCTGACTTAACTATTTCACCTCCTATTTCATAGATGCCT  499

seq1  GAAACCATACTACCCTACTGAATTATTTCTGCATGTATCAAATATCTTCA  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCATACTACCCTACTGAATTATTTCTGCATGTATCAAATATCTTCA  549

seq1  TGTTGAGCAATTCAAGAACTTTTAAAGCTTCCCTCTTACTTGACCCCTCA  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGCAATTCAAGAACTTTTAAAGCTTCCCTCTTACTTGACCCCTCA  599

seq1  CCCTAATATTAACTGCTGTCTTCCTTCACTTAAAATTCTGGTGAGTTCAT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATATTAACTGCTGTCTTCCTTCACTTAAAATTCTGGTGAGTTCAT  649

seq1  CTATGCCAGTGCACTTTTCTCAGCCTCAGTTACAAGATCATCTGCCTCTT  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCAGTGCACTTTTCTCAGCCTCAGTTACAAGATCATCTGCCTCTT  699

seq1  TCTGGTGGCCAGGGTACCAGGTACTGGGTCTTCTCTCATTTTACACCTCA  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGCCAGGGTACCAGGTACTGGGTCTTCTCTCATTTTACACCTCA  749

seq1  CAGGCTTATTGAATATTGTTAAATTAAGATTTCCAACCAAACTAAAAACA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTATTGAATATTGTTAAATTAAGATTTCCAACCAAACTAAAAACA  799

seq1  GGTAAATCATAACCATACATCTTCAGTTCAGAGCTCTCATAGGGATCTTT  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATCATAACCATACATCTTCAGTTCAGAGCTCTCATAGGGATCTTT  849

seq1  CCCTCATGGGGAAAGGGGTGCCTACTTCAATACCATTTACATATTTCAAA  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATGGGGAAAGGGGTGCCTACTTCAATACCATTTACATATTTCAAA  899

seq1  AGCCACCTCAAATGAGCTCATCTCTTTTTTAAAATGCTAGCTCCTCTACT  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTCAAATGAGCTCATCTCTTTTTTAAAATGCTAGCTCCTCTACT  949

seq1  TAGAATTATTTGTTGACTTTTCACCTCTTATAATCCTCCAGAGACCTAGA  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTATTTGTTGACTTTTCACCTCTTATAATCCTCCAGAGACCTAGA  999

seq1  AGGACTATGTTCACTTCCTACTACAGCCTAGTGCTGACTACTACCTCTGA  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTATGTTCACTTCCTACTACAGCCTAGTGCTGACTACTACCTCTGA  1049

seq1  ATTC  1028
      ||||
seq2  ATTC  1053


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