BAC Information

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BAC

Clone NameB6Ng01-187N19
Chromosome2 (Build37)
Map Location 96,924,492 - 97,093,506
singlet/doubletdoublet
Overlap geneLOC100043267
Upstream genenone
Downstream geneLrrc4c, LOC621146, LOC664974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187N19.bB6Ng01-187N19.g
ACCGA012320GA012321
length9731,008
definitionB6Ng01-187N19.b B6Ng01-187N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,924,492 - 96,925,460)(97,092,504 - 97,093,506)
sequence
gaattccttaagtggatactgaagttataccctctttctcccctttccta
cccctcgtgtgtctgtcttacttatcaaacacatgattctttattattta
atgatgaatgtcagagctataattaagtacatatttatatataacactgt
agtatgttttatatagtaaaaatctacacacttgagagatcagttagtgt
tgtatacatgactttaggctgacctcttagaattgggtaacttataagca
agcccatcccagcagaagaaataattctctatctctctgcaaccatcagt
tgcctgtagtttaatttgtggggggcgggggaaaacacctagttcaactc
cccccaagaataaatggaaaaagaacaaaagaaatatcaccattcttcat
atatttcttgaatatatatttcactatattattttacttacaaaatattc
ctgagtgcctagtttttaatttttttaaccaatacacaaaacataagccc
tgtacacattcactggatatcagtgtttaatacatctctatagtatataa
gcaatggttagacaagattaaatgcatttatctccaacattagtcacttc
cttatggtaaaaattttcatctttgttcttgctgtttaaaatatctggtg
tattattgttttccctctcttcatattggttgattgtttttgagctactt
aaaactttgcgtgaatactttcatttgccaagcatcttgcaaagttaagg
gcaagtatgtgcaacacatagactggtaatctgtggactcacctagaaaa
atgttggttttttaaaaaatcattccttttatttgatgatgtttaaatgg
aagtactaaatatgttttttttctattgctataaaatttcttcttattgc
tggggattggattttagggcttttgttcttcaggaagacagcagagtgtg
acacatagaaaaggttccatatg

gaattcaaaagtgccaaatttctaatttattttcatgtttagagatattg
tgcatgagaatgcatgtattttcacatgctcacatgcactcaacattgct
tgtggaagtaagaaacaacttgtaggaagttattctgtccacttgacaca
gaggtttgaatgttcaaactcaggtactcatggttagttggtaagtaact
tagttcactttgctatcttgccagacccttgaatatgcattttaagcaaa
ggtgttagaataattttagaatctaggagttttgtttctgcttcaataat
ttgtaagtaaaatggatatatttaatgtgtgcttacaatgcacacatcct
gtgtaggatacttgactgggaacgacatttagattttacacacacacact
gaaatttatagtatgtcaaaactatatagaaagtatttattttccttatt
cttaattttgtggcaaatgttttatgggcaagggaaatggtagtggttag
tgttggctatggaagtatgaggtctgcaactttggtcttcaaaacccatg
taaaactgcagcactacacttacaatcatggtgcttgcaacgcagagact
ggagtcccaaagacaaactgactagcgaaattatctaagtaggggtgttg
taggttcaattgagagattacccctcagcggaatgaggtgggggagcaat
tgcagatgcctttcgttagcctagcatcacccccagacttaaggtgttta
agacacacctgaataagtccccataaacatgaaagcaaatataaacatag
agaaacatgtgcagaaatatcctgtaatgttttcataaatatagattgag
gggataaaatgtataaatattttataaataaataaaattaagattctgtt
ttcaacagttaattaaatgaagaaggtaaagctatttccaaattgtgaat
tttatttaattattcctgctctcctatccaacagtactttgacacaccaa
cgttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_96924492_96925460
seq2: B6Ng01-187N19.b_52_1024

seq1  GAATTCCTTAAGTGGATACTGAAGTTATACCCTCTTTCTCCCCTTTCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAGTGGATACTGAAGTTATACCCTCTTTCTCCCCTTTCCTA  50

seq1  CCCCTCGTGTGTCTGTCTTACTTATCAAACACATGATTCTTTATTATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCGTGTGTCTGTCTTACTTATCAAACACATGATTCTTTATTATTTA  100

seq1  ATGATGAATGTCAGAGCTATAATTAAGTACATATTTATATATAACACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAATGTCAGAGCTATAATTAAGTACATATTTATATATAACACTGT  150

seq1  AGTATGTTTTATATAGTAAAAATCTACACACTTGAGAGATCAGTTAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTTTATATAGTAAAAATCTACACACTTGAGAGATCAGTTAGTGT  200

seq1  TGTATACATGACTTTAGGCTGACCTCTTAGAATTGGGTAACTTATAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACATGACTTTAGGCTGACCTCTTAGAATTGGGTAACTTATAAGCA  250

seq1  AGCCCATCCCAGCAGAAGAAATAATTCTCTATCTCTCTGCAACCATCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCCCAGCAGAAGAAATAATTCTCTATCTCTCTGCAACCATCAGT  300

seq1  TGCCTGTAGTTTAATTTGTGGGGGGCGGGGGAAAACACCTAGTTCAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAGTTTAATTTGTGGGGGGCGGGGGAAAACACCTAGTTCAACTC  350

seq1  CCCCCAAGAATAAATGGAAAAAGAACAAAAGAAATATCACCATTCTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAGAATAAATGGAAAAAGAACAAAAGAAATATCACCATTCTTCAT  400

seq1  ATATTTCTTGAATATATATTTCACTATATTATTTTACTTACAAAATATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTTGAATATATATTTCACTATATTATTTTACTTACAAAATATTC  450

seq1  CTGAGTGCCTAGTTTTTAATTTTTTTAACCAATACACAAAACATAAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCCTAGTTTTTAATTTTTTTAACCAATACACAAAACATAAGCCC  500

seq1  TGTACACATTCACTGGATATCAGTGTTTAATACATCTCTATAGTATATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACATTCACTGGATATCAGTGTTTAATACATCTCTATAGTATATAA  550

seq1  GCAATGGTTAGACAAGATTAAATGCATTTATCTCCAACATTAGTCACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGTTAGACAAGATTAAATGCATTTATCTCCAACATTAGTCACTTC  600

seq1  CTTATGGTAAAAATTTTCATCTTTGTTCTTGCTGTTTAAAATATCTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGTAAAAATTTTCATCTTTGTTCTTGCTGTTTAAAATATCTGGTG  650

seq1  TATTATTGTTTTCCCTCTCTTCATATTGGTTGATTGTTTTTGAGCTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGTTTTCCCTCTCTTCATATTGGTTGATTGTTTTTGAGCTACTT  700

seq1  AAAACTTTGCGTGAATACTTTCATTTGCCAAGCATCTTGCAAAGTTAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTGCGTGAATACTTTCATTTGCCAAGCATCTTGCAAAGTTAAGG  750

seq1  GCAAGTATGTGCAACACATAGACTGGTAATCTGTGGACTCACCTAG-AAA  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCAAGTATGTGCAACACATAGACTGGTAATCTGTGGACTCACCTAGAAAA  800

seq1  ATGTTGGTTTTTT-AAAAATCATTCC-TTTATTTGATGATGTTTAAATGG  847
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  ATGTTGGTTTTTTAAAAAATCATTCCTTTTATTTGATGATGTTTAAATGG  850

seq1  AAGTAACTAAAATATGTTTTTTTTCTTATTGCTATAAAAATTCTTCTTAT  897
      |||| ||| |||||||||||||||| ||||||||||||| ||||||||||
seq2  AAGT-ACT-AAATATGTTTTTTTTC-TATTGCTATAAAATTTCTTCTTAT  897

seq1  TGCTGGGGATTTGGATTTAGGGC-TTTGTATTTCAAGAAGACAGCAGAGT  946
      ||||||||||| |  |||||||| |||||  |||| ||||||||||||||
seq2  TGCTGGGGATTGGATTTTAGGGCTTTTGTTCTTCAGGAAGACAGCAGAGT  947

seq1  G-GACACATAG-AAAGGTT-CATATG  969
      | ||||||||| ||||||| ||||||
seq2  GTGACACATAGAAAAGGTTCCATATG  973


seq1: chr2_97092504_97093506
seq2: B6Ng01-187N19.g_67_1073 (reverse)

seq1  ACCAACGTT-GTGTGTCCAAGTACTG-TGGATAGGAGAAGCAGAAATAAT  48
      ||||||||| ||||||| |||||||| |||||||||| ||||| ||||||
seq2  ACCAACGTTGGTGTGTCAAAGTACTGTTGGATAGGAG-AGCAGGAATAAT  49

seq1  TAAATTAAAAATCACAATTTTGTAAATAGCTTTACCTTCTTCAATTTAAT  98
      |||| ||||| |||||| |||| ||||||||||||||||||| |||||||
seq2  TAAA-TAAAATTCACAA-TTTGGAAATAGCTTTACCTTCTTC-ATTTAAT  96

seq1  T-ACTGTTG-AAACAGAATCTTAATTTTATTTATTTAT-AAATATTTATA  145
      | ||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  TAACTGTTGAAAACAGAATCTTAATTTTATTTATTTATAAAATATTTATA  146

seq1  CATTTTATCCCCTCAATCTATATTTATTGAAAACATTACAGGATATTTCT  195
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATTTTATCCCCTCAATCTATATTTA-TGAAAACATTACAGGATATTTCT  195

seq1  GCACATGTTTCTCTATGTTTATATTTGCTTTCATGTTTATGGGGACTTAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGTTTCTCTATGTTTATATTTGCTTTCATGTTTATGGGGACTTAT  245

seq1  TCAGGTGTGTCTTAAACACC-TAAGTCTGGGGGTGATGCTAGGCTAACG-  293
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  TCAGGTGTGTCTTAAACACCTTAAGTCTGGGGGTGATGCTAGGCTAACGA  295

seq1  AAGGCATCTGCAATTGCT-CCCCACCTCATT-CGCTGAGGGGTAATCTCT  341
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  AAGGCATCTGCAATTGCTCCCCCACCTCATTCCGCTGAGGGGTAATCTCT  345

seq1  CAATTGAACCTACAACACCCCTACTTAGATAATTTCGCTAGTCAGTTTGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAACCTACAACACCCCTACTTAGATAATTTCGCTAGTCAGTTTGT  395

seq1  CTTTGGGACTCCAGTCTCTGCGTTGCAAGCACCATGATTGTAAGTGTAGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGACTCCAGTCTCTGCGTTGCAAGCACCATGATTGTAAGTGTAGT  445

seq1  GCTGCAGTTTTACATGGGTTTTGAAGACCAAAGTTGCAGACCTCATACTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGTTTTACATGGGTTTTGAAGACCAAAGTTGCAGACCTCATACTT  495

seq1  CCATAGCCAACACTAACCACTACCATTTCCCTTGCCCATAAAACATTTGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCCAACACTAACCACTACCATTTCCCTTGCCCATAAAACATTTGC  545

seq1  CACAAAATTAAGAATAAGGAAAATAAATACTTTCTATATAGTTTTGACAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATTAAGAATAAGGAAAATAAATACTTTCTATATAGTTTTGACAT  595

seq1  ACTATAAATTTCAGTGTGTGTGTGTAAAATCTAAATGTCGTTCCCAGTCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAATTTCAGTGTGTGTGTGTAAAATCTAAATGTCGTTCCCAGTCA  645

seq1  AGTATCCTACACAGGATGTGTGCATTGTAAGCACACATTAAATATATCCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCTACACAGGATGTGTGCATTGTAAGCACACATTAAATATATCCA  695

seq1  TTTTACTTACAAATTATTGAAGCAGAAACAAAACTCCTAGATTCTAAAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTACAAATTATTGAAGCAGAAACAAAACTCCTAGATTCTAAAAT  745

seq1  TATTCTAACACCTTTGCTTAAAATGCATATTCAAGGGTCTGGCAAGATAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAACACCTTTGCTTAAAATGCATATTCAAGGGTCTGGCAAGATAG  795

seq1  CAAAGTGAACTAAGTTACTTACCAACTAACCATGAGTACCTGAGTTTGAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGAACTAAGTTACTTACCAACTAACCATGAGTACCTGAGTTTGAA  845

seq1  CATTCAAACCTCTGTGTCAAGTGGACAGAATAACTTCCTACAAGTTGTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAACCTCTGTGTCAAGTGGACAGAATAACTTCCTACAAGTTGTTT  895

seq1  CTTACTTCCACAAGCAATGTTGAGTGCATGTGAGCATGTGAAAATACATG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCCACAAGCAATGTTGAGTGCATGTGAGCATGTGAAAATACATG  945

seq1  CATTCTCATGCACAATATCTCTAAACATGAAAATAAATTAGAAATTTGGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCATGCACAATATCTCTAAACATGAAAATAAATTAGAAATTTGGC  995

seq1  ACTTTTGAATTC  1003
      ||||||||||||
seq2  ACTTTTGAATTC  1007


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