BAC Information

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BAC

Clone NameB6Ng01-188A08
Chromosome2 (Build37)
Map Location 34,458,083 - 34,605,814
singlet/doubletdoublet
Overlap geneMapkap1, LOC623269, Gapvd1
Upstream geneLmx1b, LOC100041918, 2610528K11Rik, LOC100041931, Pbx3, LOC665948, LOC623448
Downstream geneHspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188A08.bB6Ng01-188A08.g
ACCGA012437GA012438
length1,136989
definitionB6Ng01-188A08.b B6Ng01-188A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,458,083 - 34,459,235)(34,604,817 - 34,605,814)
sequence
gaattcatactggctagaagtgatagccaaattgatgactgaaatgcttt
tatgtagttttcatttaaacctaaaagtatttgatggtttattcagtatc
tagttttcacagattatatgtattcacttagaggcctttaatgggtttat
caacatagagaaagaccagtgttaggaatgttcaaaggtttgcagacaga
gctccaagcagacttcgtgaggagaaaagtcaccatccttaaaacagaaa
actccacccgagcacccaaacaatagacttggaggtctgtgtaaataaag
caaagcagctacctggctttagaacgctctggaaggagctcagacttggc
acctctgtgcccaccagagccccagtttagatgcactctgtagactctga
actcctgggacagtggtatttcatttgaaaggactgacatggacaacctg
taagacatccatccttatgtgtccactaactctcatgtgcagagttcatg
tctagttgggtggcatcccccttcccctctcccaggaaaggtggcagcaa
gatcaggttttttttactaaagtcacttggcacaccacatcccaggcacc
aaacccgctgaccacccacccttttttctccctggctgacagggcagctc
cagcagagaccacacataagcacacttgtccagcatgacaggcaccctag
ttcagcttcggaagaagcacgtacctgggatgtttgttcctttaggtgct
cccatgagtgtgtgtaacagaaattccagtgaggagcgtggggaatattc
gaggccttgctgctgtacagtgggcacctgtgtttacaaaaagtagccca
cagcctgctctccggcgctgttgactcccaggaaatctgggcctcacaca
tgagagagtccagtagtgttgtgcttttttgtctctgacggggacttatt
tccaaagttccagatcaaatacattaatatgcctgttggcagaacacaaa
ctctcctgaattaatgccccagttatgattgccttttcctgagagcacat
cagagcagacgctctctcttacagatatgttcctagcctattaaagggtc
tcatctaacctgtcaaagggagtctgctggattttt
gaattcctctccttttccttccttcctgtttgtttttgtttttttgagac
agggtttctttgtgtagccctggctgtcctggaactcatgcctgcctctg
cctcctgagtactggtatcaaaggcctgtagcatcactgcccagcatttt
ctttttctttttttttcttttcctaaaggctaaagcaggactgatgatgt
agcttgatggtagagcagttgcacttagaaggcagagactggatcttttt
tgagttcaaggccagtctgatcttcataatgaggtctaggctagacagaa
ctataaagtaagactctgtcaaaaaaaaaaaaaaaaagaatagaacacag
caaaaagtaaaaaagacttccttgttttgttagctgtttttatttccttg
tttatgttgcagtgttagggatcagactccagccatagcacccagcagcc
agtcacatttacagcacaaagacaaatgaatcatttggttgtcaaatgcc
attttcttgcttttttattttccttatgattttcaccaaggtgctgggag
ttgaaccccaggccttcttccgcggccctcagagtaccactcaagttgga
tttgtcccagagttcttttcagtcagattcagacgaaacagttttagctg
gcatactaaactggttttaaagtctcattgtgcgccataagaaacaccca
gtgatgtcagttttactaatgacatatttttgattaaggagtctcacaag
tcttttcttgtaaaggcattatttttcctttttaataaataatctatgga
ataataatattttgctttctcaaagtcatctttcgatgtgtgtgtgtggg
gggggtatgcattatgtataagccagaaactgatgatggtatctgtcttc
ccttatgtttccatcttccttccttccttccctcgctctctctctctctc
ttttcgtccagagatgggagttctttattttttaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34458083_34459235
seq2: B6Ng01-188A08.b_45_1180

seq1  GAATTCATACTGGCTAGAAGTGATAGCCAAATTGATGACTGAAATGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTGGCTAGAAGTGATAGCCAAATTGATGACTGAAATGCTTT  50

seq1  TATGTAGTTTTCATTTAAACCTAAAAGTATTTGATGGTTTATTCAGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGTTTTCATTTAAACCTAAAAGTATTTGATGGTTTATTCAGTATC  100

seq1  TAGTTTTCACAGATTATATGTATTCACTTAGAGGCCTTTAATGGGTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCACAGATTATATGTATTCACTTAGAGGCCTTTAATGGGTTTAT  150

seq1  CAACATAGAGAAAGACCAGTGTTAGGAATGTTCAAAGGTTTGCAGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATAGAGAAAGACCAGTGTTAGGAATGTTCAAAGGTTTGCAGACAGA  200

seq1  GCTCCAAGCAGACTTCGTGAGGAGAAAAGTCACCATCCTTAAAACAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAGCAGACTTCGTGAGGAGAAAAGTCACCATCCTTAAAACAGAAA  250

seq1  ACTCCACCCGAGCACCCAAACAATAGACTTGGAGGTCTGTGTAAATAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCCGAGCACCCAAACAATAGACTTGGAGGTCTGTGTAAATAAAG  300

seq1  CAAAGCAGCTACCTGGCTTTAGAACGCTCTGGAAGGAGCTCAGACTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGCTACCTGGCTTTAGAACGCTCTGGAAGGAGCTCAGACTTGGC  350

seq1  ACCTCTGTGCCCACCAGAGCCCCAGTTTAGATGCACTCTGTAGACTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTGCCCACCAGAGCCCCAGTTTAGATGCACTCTGTAGACTCTGA  400

seq1  ACTCCTGGGACAGTGGTATTTCATTTGAAAGGACTGACATGGACAACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGGACAGTGGTATTTCATTTGAAAGGACTGACATGGACAACCTG  450

seq1  TAAGACATCCATCCTTATGTGTCCACTAACTCTCATGTGCAGAGTTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACATCCATCCTTATGTGTCCACTAACTCTCATGTGCAGAGTTCATG  500

seq1  TCTAGTTGGGTGGCATCCCCCTTCCCCTCTCCCAGGAAAGGTGGCAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTGGGTGGCATCCCCCTTCCCCTCTCCCAGGAAAGGTGGCAGCAA  550

seq1  GATCAGGTTTTTTTTACTAAAGTCACTTGGCACACCACATCCCAGGCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGTTTTTTTTACTAAAGTCACTTGGCACACCACATCCCAGGCACC  600

seq1  AAACCCGCTGACCACCCACCCTTTTTTCTCCCTGGCTGACAGGGCAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCGCTGACCACCCACCCTTTTTTCTCCCTGGCTGACAGGGCAGCTC  650

seq1  CAGCAGAGACCACACATAAGCACACTTGTCCAGCATGACAGGCACCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGACCACACATAAGCACACTTGTCCAGCATGACAGGCACCCTAG  700

seq1  TTCAGCTTCGGAAGAAGCACGTACCTGGGATGTTTGTTCCTTTAGGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTCGGAAGAAGCACGTACCTGGGATGTTTGTTCCTTTAGGTGCT  750

seq1  CCCATGAGTGTGTGTAACAGAAATTCCAGTGAGGAGCGTGGGGAATATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAGTGTGTGTAACAGAAATTCCAGTGAGGAGCGTGGGGAATATTC  800

seq1  GAGGCCTTGCTGCTGTACAGTGGGCACCTGTGTTTACAAAAAGTAGCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTGCTGCTGTACAGTGGGCACCTGTGTTTACAAAAAGTAGCCCA  850

seq1  CAGCCTGCTCTCCGGCGCTGTTGACTCCCAGGAAATCT-GGCCTCACACA  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGCCTGCTCTCCGGCGCTGTTGACTCCCAGGAAATCTGGGCCTCACACA  900

seq1  TGAGAGAGTCCAGTAGTGTTGTGCTTTTTTGTCTCTGACGGGGACTTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGTCCAGTAGTGTTGTGCTTTTTTGTCTCTGACGGGGACTTATT  950

seq1  TCCAAAGTTCCAGATCAAATACATTAAATATTGCCTGTTGGCAGAACAAC  999
      ||||||||||||||||||||||||| |||| |||||||||||||||| ||
seq2  TCCAAAGTTCCAGATCAAATACATT-AATA-TGCCTGTTGGCAGAAC-AC  997

seq1  AAACTCTCCTGAATTAAATGCCCCAGTTATTGGATTGCCTTTTCCTGAGA  1049
      ||||||||||||||| ||||||||||||||  ||||||||||||||||||
seq2  AAACTCTCCTGAATT-AATGCCCCAGTTAT--GATTGCCTTTTCCTGAGA  1044

seq1  GCACAATCAGAAGCAGGACGCCTCTCCTCCTAACAGATATGTTCCCTAGC  1099
      |||| ||||| |||| |||| |||||   || ||||||||||| ||||| 
seq2  GCAC-ATCAG-AGCA-GACG-CTCTC--TCTTACAGATATGTT-CCTAG-  1086

seq1  CCTATTAAAAGGGGTCTTCATCTAACCTGTCAAAGGGAGTCTGCTGGGGT  1149
      |||||||||  ||||| ||||||||||||||||||||||||||||||  |
seq2  CCTATTAAA--GGGTC-TCATCTAACCTGTCAAAGGGAGTCTGCTGGATT  1133

seq1  TTTT  1153
      ||| 
seq2  TTT-  1136

seq1: chr2_34604817_34605814
seq2: B6Ng01-188A08.g_63_1051 (reverse)

seq1  AATCTTTAAAAAAAAAAAAAGAAACTCCATCTCTGGAAAGAAAAAGAGAG  50
      ||||||    |||||| ||||||   ||||||||||  |  |||||||||
seq2  AATCTT----AAAAAATAAAGAACTCCCATCTCTGG--ACGAAAAGAGAG  44

seq1  AGAGAGAGAGCGAAGGGAAGGAAGGAAGAAAGATGGAAAACAATAAAGGA  100
      |||||||||||| ||||||||||||||| ||||||||||   |||| |||
seq2  AGAGAGAGAGCG-AGGGAAGGAAGGAAGGAAGATGGAAA--CATAAGGGA  91

seq1  AGACAGATACCCATCATCAGTTTCTGGCTTATACAT-ATGCATACCCCCC  149
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  AGACAGATA-CCATCATCAGTTTCTGGCTTATACATAATGCATACCCCCC  140

seq1  CCACACACACACATCGAAAGATGACTTTGAGAAAGCAAAATATTATTATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACACACATCGAAAGATGACTTTGAGAAAGCAAAATATTATTATT  190

seq1  CCATAGATTATTTATTAAAAAGGAAAAATAATGCCTTTACAAGAAAAGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGATTATTTATTAAAAAGGAAAAATAATGCCTTTACAAGAAAAGAC  240

seq1  TTGTGAGACTCCTTAATCAAAAATATGTCATTAGTAAAACTGACATCACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGACTCCTTAATCAAAAATATGTCATTAGTAAAACTGACATCACT  290

seq1  GGGTGTTTCTTATGGCGCACAATGAGACTTTAAAACCAGTTTAGTATGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTTCTTATGGCGCACAATGAGACTTTAAAACCAGTTTAGTATGCC  340

seq1  AGCTAAAACTGTTTCGTCTGAATCTGACTGAAAAGAACTCTGGGACAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAACTGTTTCGTCTGAATCTGACTGAAAAGAACTCTGGGACAAAT  390

seq1  CCAACTTGAGTGGTACTCTGAGGGCCGCGGAAGAAGGCCTGGGGTTCAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGAGTGGTACTCTGAGGGCCGCGGAAGAAGGCCTGGGGTTCAAC  440

seq1  TCCCAGCACCTTGGTGAAAATCATAAGGAAAATAAAAAAGCAAGAAAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACCTTGGTGAAAATCATAAGGAAAATAAAAAAGCAAGAAAATG  490

seq1  GCATTTGACAACCAAATGATTCATTTGTCTTTGTGCTGTAAATGTGACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGACAACCAAATGATTCATTTGTCTTTGTGCTGTAAATGTGACTG  540

seq1  GCTGCTGGGTGCTATGGCTGGAGTCTGATCCCTAACACTGCAACATAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGGTGCTATGGCTGGAGTCTGATCCCTAACACTGCAACATAAAC  590

seq1  AAGGAAATAAAAACAGCTAACAAAACAAGGAAGTCTTTTTTACTTTTTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATAAAAACAGCTAACAAAACAAGGAAGTCTTTTTTACTTTTTGC  640

seq1  TGTGTTCTATTCTTTTTTTTTTTTTTTTTGACAGAGTCTTACTTTATAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTATTCTTTTTTTTTTTTTTTTTGACAGAGTCTTACTTTATAGT  690

seq1  TCTGTCTAGCCTAGACCTCATTATGAAGATCAGACTGGCCTTGAACTCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTAGCCTAGACCTCATTATGAAGATCAGACTGGCCTTGAACTCAA  740

seq1  AAAAGATCCAGTCTCTGCCTTCTAAGTGCAACTGCTCTACCATCAAGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCCAGTCTCTGCCTTCTAAGTGCAACTGCTCTACCATCAAGCTA  790

seq1  CATCATCAGTCCTGCTTTAGCCTTTAGGAAAAGAAAAAAAAAGAAAAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCAGTCCTGCTTTAGCCTTTAGGAAAAGAAAAAAAAAGAAAAAGA  840

seq1  AAATGCTGGGCAGTGATGCTACAGGCCTTTGATACCAGTACTCAGGAGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGGCAGTGATGCTACAGGCCTTTGATACCAGTACTCAGGAGGC  890

seq1  AGAGGCAGGCATGAGTTCCAGGACAGCCAGGGCTACACAAAGAAACCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCATGAGTTCCAGGACAGCCAGGGCTACACAAAGAAACCCTG  940

seq1  TCTCAAAAAAACAAAAACAAACAGGAAGGAAGGAAAAGGAGAGGAATTC  998
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAAACAAAAACAAACAGGAAGGAAGGAAAAGGAGAGGAATTC  989