BAC Information

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BAC

Clone NameB6Ng01-188B03
Chromosome2 (Build37)
Map Location 51,734,386 - 51,780,938
singlet/doubletdoublet
Overlap geneRbm43
Upstream geneLOC227885, Rnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1
Downstream geneLOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188B03.bB6Ng01-188B03.g
ACCGA012475GA012476
length1,012843
definitionB6Ng01-188B03.b B6Ng01-188B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,734,386 - 51,735,389)(51,780,101 - 51,780,938)
sequence
gaattctcttaggggctctgtgctatacagtcatgtaaagtctctgaact
caacacttatgatagaacatttaattccagcactccagagacagagccag
gtgggggtttctgtgagatcaaagccagcctggtctacacagtgagttct
aggacaaccaggattatttagagagatgctatatccataaaaaatgggaa
ttttattttgtaattttatgccacagggttgttttaagctaatagaatta
gaaactctgaaagcaaaaacagaaatggattgtcatgatattagtatcat
taggtctttctgaaaacctgcgtggatgtgttttaacaaaagtacagtgt
gtcagggtctgggagaccagtgtgcccatggtaacctcacaagagtcagg
ctcaagaaggatgacaacgctgtcctcaggagtcccagtatatacgttta
tgagtgattgatcggtgtgtgcaaagacaagaaaccgtggcttcctgatt
ccagatgtttacagtctgagactgctcagcaatcaccaggtttccatcga
tttatcaatcaatttctctcccattttcttgtcacccaagcaataaacaa
tgttgtttattgttaaaaaacaatattattgtagtagatattaaaagagt
ttagagctttgacaaggggcctgaatatgtcctctcccatcttcacccaa
agaacacacttgttttctgtgccttcacacctaacacgtctcctgtgctg
gagatgattcggagaaagcatgagagacagagaaccaactggcctaaacc
agggtctgaatgagtccctctcttgttgtgtagccgtaaatcaatgaccc
tcgctattttccatccttttattccataaaaattaaactgttaccatgag
ccttatttttgaccataatgtgaagaatacattatgaaagtcttaatata
acaatgatctataaaactccatcagaaacaaatattctcttaaataacgt
taataccttgcc
gaattcattgaagagtgtgcccaggagttccaccttgagctcagaaaaga
gctactggttttggaaggaatgggagatagagagaaaagaaacattaggc
aggctttagaagaactgggtggcagatatcctagagttttgaccaacgtt
cacagcacacatattgatcttataggacctccttccgacacatacctatt
taagacacagctcatgaaatctgcggggcaaaaggtcacttgaagtctca
gccacagttatcatggtcacttcccctgccccttccccatctaaggtata
ggagaagataagatttacagatatgaaactacttattcaaagttgcccag
cagacaacaactgggactagcattgaataaaaagtaatgtctaaatcaaa
ccttgaaaagagaactcactaaatgttgaagcaatctcactttccctcca
aatctaaaattattaggaaaagaagtcttcccctgcataggtttgtatga
cttttaggctgttgctagcttcttgggttttacattcaccccaccccaca
cagcattagaatgttggtcaagctcacctgggaagctgtggttctgttag
aattgtgggggaatcttgggagaagtctgtgcagtggctttttgtgggtg
gttcttgctttacgatagtgtggcgtccagatgagcattgtaagttgaaa
aacactgtgaatcagcaatgccgttaatccaagtaatgtgcagaacaccc
ctagacttgccaaactgccacagtgaagaaaggactgccttaccctgggt
tgctgcgttgactgacaggttcaggctcgctgctgctgctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_51734386_51735389
seq2: B6Ng01-188B03.b_44_1055

seq1  GAATTCTCTTAGGGGCTCTGTGCTATACAGTCATGTAAAGTCTCTGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAGGGGCTCTGTGCTATACAGTCATGTAAAGTCTCTGAACT  50

seq1  CAACACTTATGATAGAACATTTAATTCCAGCACTCCAGAGACAGAGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTTATGATAGAACATTTAATTCCAGCACTCCAGAGACAGAGCCAG  100

seq1  GTGGGGGTTTCTGTGAGATCAAAGCCAGCCTGGTCTACACAGTGAGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGTTTCTGTGAGATCAAAGCCAGCCTGGTCTACACAGTGAGTTCT  150

seq1  AGGACAACCAGGATTATTTAGAGAGATGCTATATCCATAAAAAATGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAACCAGGATTATTTAGAGAGATGCTATATCCATAAAAAATGGGAA  200

seq1  TTTTATTTTGTAATTTTATGCCACAGGGTTGTTTTAAGCTAATAGAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTGTAATTTTATGCCACAGGGTTGTTTTAAGCTAATAGAATTA  250

seq1  GAAACTCTGAAAGCAAAAACAGAAATGGATTGTCATGATATTAGTATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTGAAAGCAAAAACAGAAATGGATTGTCATGATATTAGTATCAT  300

seq1  TAGGTCTTTCTGAAAACCTGCGTGGATGTGTTTTAACAAAAGTACAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTTCTGAAAACCTGCGTGGATGTGTTTTAACAAAAGTACAGTGT  350

seq1  GTCAGGGTCTGGGAGACCAGTGTGCCCATGGTAACCTCACAAGAGTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGTCTGGGAGACCAGTGTGCCCATGGTAACCTCACAAGAGTCAGG  400

seq1  CTCAAGAAGGATGACAACGCTGTCCTCAGGAGTCCCAGTATATACGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAGGATGACAACGCTGTCCTCAGGAGTCCCAGTATATACGTTTA  450

seq1  TGAGTGATTGATCGGTGTGTGCAAAGACAAGAAACCGTGGCTTCCTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATTGATCGGTGTGTGCAAAGACAAGAAACCGTGGCTTCCTGATT  500

seq1  CCAGATGTTTACAGTCTGAGACTGCTCAGCAATCACCAGGTTTCCATCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTTTACAGTCTGAGACTGCTCAGCAATCACCAGGTTTCCATCGA  550

seq1  TTTATCAATCAATTTCTCTCCCATTTTCTTGTCACCCAAGCAATAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAATCAATTTCTCTCCCATTTTCTTGTCACCCAAGCAATAAACAA  600

seq1  TGTTGTTTATTGTTAAAAAACAATATTATTGTAGTAGATATTAAAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTATTGTTAAAAAACAATATTATTGTAGTAGATATTAAAAGAGT  650

seq1  TTAGAGC-TTGACAAGGGGCCTGAATATGTCCTCTCCCATCTTCACCCAG  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  TTAGAGCTTTGACAAGGGGCCTGAATATGTCCTCTCCCATCTTCACCCAA  700

seq1  AGAACACACTTGTTTTCTGTGCCTTCACACCTAACACGTCTCCTGTGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACACTTGTTTTCTGTGCCTTCACACCTAACACGTCTCCTGTGCTG  750

seq1  GAGATGATTCGGAGAAAGCATGAGAGACAGAGAACCAACTGGCCTAAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATTCGGAGAAAGCATGAGAGACAGAGAACCAACTGGCCTAAACC  800

seq1  AGGGTCTGAATGAGTCCCTCTCTTGTTGTGTAGCCGTAAATCAATGACCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGAATGAGTCCCTCTCTTGTTGTGTAGCCGTAAATCAATGACCC  850

seq1  TCGCTA-TTTCCATCCATTTA-TCCAT-AAAATTAAACTGTTACCATGAG  896
      |||||| ||||||||| |||| ||||| ||||||||||||||||||||||
seq2  TCGCTATTTTCCATCCTTTTATTCCATAAAAATTAAACTGTTACCATGAG  900

seq1  -CTTA-TTTTGACCATAATGTGAA-AATACA-TATGAAAGTCATAATATA  942
       |||| |||||||||||||||||| |||||| |||||||||| |||||||
seq2  CCTTATTTTTGACCATAATGTGAAGAATACATTATGAAAGTCTTAATATA  950

seq1  AAAAGTATATATAAAACT-CATCAGAAACATAATATTTTCTTAATAAATG  991
      | ||  || ||||||||| ||||||||||| |||||| ||||||  || |
seq2  ACAATGATCTATAAAACTCCATCAGAAACA-AATATTCTCTTAAATAACG  999

seq1  TTAATACTTTGCC  1004
      ||||||| |||||
seq2  TTAATACCTTGCC  1012

seq1: chr2_51780101_51780938
seq2: B6Ng01-188B03.g_67_909 (reverse)

seq1  AGCAGCAGCAGCAGCGAGCCTG-AGCTGTCAGTCAACGCAGCAA-CCAGG  48
      |||||||||||||||||||||| | ||||||||||||||||||| |||||
seq2  AGCAGCAGCAGCAGCGAGCCTGAACCTGTCAGTCAACGCAGCAACCCAGG  50

seq1  GTAA-GCAGTCCTTTCTTCACTGTGGGCAGTTTGGCAAGTCTA-GGGTGT  96
      |||| ||||||||||||||||||| |||||||||||||||||| ||||||
seq2  GTAAGGCAGTCCTTTCTTCACTGT-GGCAGTTTGGCAAGTCTAGGGGTGT  99

seq1  TCTGCACATTACTTGGATTAACGGCATTGCTGATTCACAGTG-TTTTCAA  145
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTGCACATTACTTGGATTAACGGCATTGCTGATTCACAGTGTTTTTCAA  149

seq1  CTTACAATGCTCATCTGGACGCCACACTATCGTAAAGCAAGAACCACCCA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAATGCTCATCTGGACGCCACACTATCGTAAAGCAAGAACCACCCA  199

seq1  C-AAAAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACA  244
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACA  249

seq1  GAACCACAGCTTCCCAGGTGAGCTTGACCAACATTCTAATGCTGTGTGGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACAGCTTCCCAGGTGAGCTTGACCAACATTCTAATGCTGTGTGGG  299

seq1  GTGGGGTGAATGTAAAACCCAAGAAGCTAGCAACAGCCTAAAAGTCATAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGAATGTAAAACCCAAGAAGCTAGCAACAGCCTAAAAGTCATAC  349

seq1  AAACCTATGCAGGGGAAGACTTCTTTTCCTAATAATTTTAGATTTGGAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATGCAGGGGAAGACTTCTTTTCCTAATAATTTTAGATTTGGAGG  399

seq1  GAAAGTGAGATTGCTTCAACATTTAGTGAGTTCTCTTTTCAAGGTTTGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGAGATTGCTTCAACATTTAGTGAGTTCTCTTTTCAAGGTTTGAT  449

seq1  TTAGACATTACTTTTTATTCAATGCTAGTCCCAGTTGTTGTCTGCTGGGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATTACTTTTTATTCAATGCTAGTCCCAGTTGTTGTCTGCTGGGC  499

seq1  AACTTTGAATAAGTAGTTTCATATCTGTAAATCTTATCTTCTCCTATACC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAATAAGTAGTTTCATATCTGTAAATCTTATCTTCTCCTATACC  549

seq1  TTAGATGGGGAAGGGGCAGGGGAAGTGACCATGATAACTGTGGCTGAGAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGGGGAAGGGGCAGGGGAAGTGACCATGATAACTGTGGCTGAGAC  599

seq1  TTCAAGTGACCTTTTGCCCCGCAGATTTCATGAGCTGTGTCTTAAATAGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGACCTTTTGCCCCGCAGATTTCATGAGCTGTGTCTTAAATAGG  649

seq1  TATGTGTCGGAAGGAGGTCCTATAAGATCAATATGTGTGCTGTGAACGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCGGAAGGAGGTCCTATAAGATCAATATGTGTGCTGTGAACGTT  699

seq1  GGTCAAAACTCTAGGATATCTGCCACCCAGTTCTTCTAAAGCCTGCCTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAACTCTAGGATATCTGCCACCCAGTTCTTCTAAAGCCTGCCTAA  749

seq1  TGTTTCTTTTCTCTCTATCTCCCATTCCTTCCAAAACCAGTAGCTCTTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTTCTCTCTATCTCCCATTCCTTCCAAAACCAGTAGCTCTTTT  799

seq1  CTGAGCTCAAGGTGGAACTCCTGGGCACACTCTTCAATGAATTC  838
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCAAGGTGGAACTCCTGGGCACACTCTTCAATGAATTC  843