BAC Information

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BAC

Clone NameB6Ng01-188H05
Chromosome2 (Build37)
Map Location 159,394,467 - 159,528,988
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689, Gm826, Mafb, LOC100043892, Top1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188H05.bB6Ng01-188H05.g
ACCGA012746GA012747
length1,1781,101
definitionB6Ng01-188H05.b B6Ng01-188H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,394,467 - 159,395,655)(159,527,881 - 159,528,988)
sequence
gaattctctacaaggataagtttgttttcttattttgttttgaggaaggt
tttttactgaaatgccaaagctgaccttgaatttactatgtagctcactc
aggacttgaacttgtccttcccttatccttgatgtatgagtagatgggaa
tataggcctttacaccggcttggcctcatcatcaaggtttgatgccagct
ctgaagatatgatgaaaaatgagaaactctgtggtccttgtcaggtattt
gatgagaacagaagatcttgattttattgccacaaaaaacctggattctt
tcagaagcttgaacgagcatgtggaagaaagttctttctactatctttga
aaaaagctcatctctcaattccagctttgagagatgctgagcagagaaac
cagtgcagcccatatgggcttccaactctcagaactatgtaatgagtagg
tcttgttgtagggcattaaagtctgttgtaatttgttctgcagtaataga
aaacaaataaacattctttccttccttctttttccattaataaatgttta
tttttggcatagtgtgtgctgagaacggcctctgccactctgtaaaaagc
agagcatttaattcccaaaacatcactaaaagtaagttttaatatgtcca
ttttcacaaggctaagcctacagttataaagtttggaaagtctttggatc
ctaattcaaacccttctgcaataccgctccatgaccattcaattcttttc
cctaccagacttgtattttctttccacatggatatgagagaggaagaagg
atcgccattcctcctgaagctactgtgcatttgcattgaatgaactagca
cacagattagttatgtccctcagagacttctgaaatctgtgcctttgtct
accttgctctgtccacctttttcagttcttcagaaattgtgcttgcttgc
cacactttgtccagaaggagcacataagaagaaactggcatagttagagc
agaataattatttactgttgtgattctgaccacgacttactcttctcgtc
tcatctcctttgtcagggtgtggccaggacagatcctattgaggctgagc
aggagaagatacatggtgtttggaacttatagaatactcacaattttcaa
tctaattgatcctgttcattggccaaac

gttggcagatgtggcaagaaaagtttccattcgacatactccctgtcgtc
ttcagtgtgaggggaaatacaagggtaggtgtgaggtagagcagaaatac
tctattgtaattctcagtaattgatttctcaaagaattaaatagggctgg
tgttgctatctgggcaaaaaaaaattttaaaagaaaaagaaaaattggaa
tctcttcaacacctttaggcagtacaccagatactatgtatgtacccagt
atgttaagtcatcaagcaaagttctttgtatccatttgctggtgaggacc
ctaccccacctacaatacagagtgatcctggtaatatacacagataattg
agctggcatagagattaagtggcttgccagtgtccacagactatttggaa
accttcaatatctgcttacctgttctgtgtgggtttggctttagagaggt
cacacgtctcttaatttaccagagtacacccatagtttatgttaaatgtg
cccgtggttcttatttaattactgagtataactttttaaggtttgttttg
attcttcatattgaataaaattaccactacctatatataggacagaggcc
tcctgaaggcagactaccagttataaccagaagaaactgtttaccgtgtt
gctaaatctaattataactaagccttcaagacagatgcaatgaaacaaaa
gtgtacacagccttttctgaaggcaacaaagatactgtgccctggacaag
ctggtaaaaacaaaacaaaacaaaacaaaacaaagacacacacaaaacag
ttatctctatttactctctactgggaactgggaggccatagctacaagag
ccataaagggtcacaacctctatttgtccttttctactctactgtatgct
gtcttggagtctctgatccatttccaatgaagttgatcaaatcagaacaa
agcagctaaagaccaaccacatgtcagcataatagaggaatttcatagat
aagtagactgagttttctgttagaaacaatggctgcacttgtgctcggta
aagcatccatcatcagatccatcaatatacttctccatcccaaatagtgt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_159394467_159395655
seq2: B6Ng01-188H05.b_47_1224

seq1  GAATTCTCTACAAGGATAAGTTTGTTTTCTTATTTTGTTTTGAGGAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACAAGGATAAGTTTGTTTTCTTATTTTGTTTTGAGGAAGGT  50

seq1  TTTTTACTGAAATGCCAAAGCTGACCTTGAATTTACTATGTAGCTCACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTGAAATGCCAAAGCTGACCTTGAATTTACTATGTAGCTCACTC  100

seq1  AGGACTTGAACTTGTCCTTCCCTTATCCTTGATGTATGAGTAGATGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGAACTTGTCCTTCCCTTATCCTTGATGTATGAGTAGATGGGAA  150

seq1  TATAGGCCTTTACACCGGCTTGGCCTCATCATCAAGGTTTGATGCCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCCTTTACACCGGCTTGGCCTCATCATCAAGGTTTGATGCCAGCT  200

seq1  CTGAAGATATGATGAAAAATGAGAAACTCTGTGGTCCTTGTCAGGTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATATGATGAAAAATGAGAAACTCTGTGGTCCTTGTCAGGTATTT  250

seq1  GATGAGAACAGAAGATCTTGATTTTATTGCCACAAAAAACCTGGATTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAACAGAAGATCTTGATTTTATTGCCACAAAAAACCTGGATTCTT  300

seq1  TCAGAAGCTTGAACGAGCATGTGGAAGAAAGTTCTTTCTACTATCTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCTTGAACGAGCATGTGGAAGAAAGTTCTTTCTACTATCTTTGA  350

seq1  AAAAAGCTCATCTCTCAATTCCAGCTTTGAGAGATGCTGAGCAGAGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTCATCTCTCAATTCCAGCTTTGAGAGATGCTGAGCAGAGAAAC  400

seq1  CAGTGCAGCCCATATGGGCTTCCAACTCTCAGAACTATGTAATGAGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGCCCATATGGGCTTCCAACTCTCAGAACTATGTAATGAGTAGG  450

seq1  TCTTGTTGTAGGGCATTAAAGTCTGTTGTAATTTGTTCTGCAGTAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGTAGGGCATTAAAGTCTGTTGTAATTTGTTCTGCAGTAATAGA  500

seq1  AAACAAATAAACATTCTTTCCTTCCTTCTTTTTCCATTAATAAATGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAAACATTCTTTCCTTCCTTCTTTTTCCATTAATAAATGTTTA  550

seq1  TTTTTGGCATAGTGTGTGCTGAGAACGGCCTCTGCCACTCTGTAAAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCATAGTGTGTGCTGAGAACGGCCTCTGCCACTCTGTAAAAAGC  600

seq1  AGAGCATTTAATTCCCAAAACATCACTAAAAGTAAGTTTTAATATGTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTTAATTCCCAAAACATCACTAAAAGTAAGTTTTAATATGTCCA  650

seq1  TTTTCACAAGGCTAAGCCTACAGTTATAAAGTTTGGAAAGTCTTTGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAAGGCTAAGCCTACAGTTATAAAGTTTGGAAAGTCTTTGGATC  700

seq1  CTAATTCAAACCCTTCTGCAATACCGCTCCATGACCATTCAATTCTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCAAACCCTTCTGCAATACCGCTCCATGACCATTCAATTCTTTTC  750

seq1  CCTACCAGACTTGTATTTTCTTTCCACATGGATATGAGAGAGGAAGAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAGACTTGTATTTTCTTTCCACATGGATATGAGAGAGGAAGAAGG  800

seq1  ATCGCCATTCCTCCTGAAGCTACTGTGCATTTGCATTGAATGAACTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCATTCCTCCTGAAGCTACTGTGCATTTGCATTGAATGAACTAGCA  850

seq1  CACAGATTAGTTATGTCCCTCAGAGACTTCTGAAATCTGTGCCTTTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTAGTTATGTCCCTCAGAGACTTCTGAAATCTGTGCCTTTGTCT  900

seq1  ACCTTGCTCTGTCCACC-TTTTCAGTTCTTCAG-AATTGTGCTTGCTTGC  948
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  ACCTTGCTCTGTCCACCTTTTTCAGTTCTTCAGAAATTGTGCTTGCTTGC  950

seq1  CACAC-TTGTCCAGAA-GAGCACATAAGAAGAAACTGGCAATAGTAAGAG  996
      ||||| |||||||||| |||||||||||||||||||||| ||||| ||||
seq2  CACACTTTGTCCAGAAGGAGCACATAAGAAGAAACTGGC-ATAGTTAGAG  999

seq1  CAG-ATAA-TATTTACTGTTGGTTGGATTCTGACCACGACTTACTCTTCT  1044
      ||| |||| ||||||||||||    |||||||||||||||||||||||||
seq2  CAGAATAATTATTTACTGTTG---TGATTCTGACCACGACTTACTCTTCT  1046

seq1  CGTCTCCATCTCCCTTGTTCAGGGTGTGGCCAGGCCAGATCTTATTGAAG  1094
      ||||| ||||||| ||| |||||||||||||||| |||||| ||||| ||
seq2  CGTCT-CATCTCCTTTG-TCAGGGTGTGGCCAGGACAGATCCTATTG-AG  1093

seq1  CCTGAGGCAGAGAAGATAACAT-GTGTTTTGACATTAATAGAAATACATC  1143
       |||||   |||||||| |||| |||||| || | | |||| ||||| ||
seq2  GCTGAGCAGGAGAAGAT-ACATGGTGTTTGGA-ACTTATAG-AATAC-TC  1139

seq1  AACAATATTTTCAAAATCTAATTGATTTCTTGTTTCATTGG-CAAAC  1189
       |||  ||||||  |||||||||||  || || |||||||| |||||
seq2  -ACA--ATTTTC--AATCTAATTGA--TCCTG-TTCATTGGCCAAAC  1178


seq1: chr2_159527881_159528988
seq2: B6Ng01-188H05.g_76_1176 (reverse)

seq1  GACACTTATTTTGGGATGGAGAAGTATATGAATGGATCCTTGAATGATGG  50
      ||||||   ||||||||||||||||||||  |||||||  || |||||||
seq2  GACACT--ATTTGGGATGGAGAAGTATATTGATGGATC--TG-ATGATGG  45

seq1  ATGCCTTTACCCGAAGCACAAGTGCAGCCATTGTTTCCTAACAGAAAACT  100
      ||| |||||||   |||||||||||||||||||||| |||||||||||||
seq2  ATG-CTTTACC--GAGCACAAGTGCAGCCATTGTTT-CTAACAGAAAACT  91

seq1  CAGTCTACCTTATCTATGAAATTCCTCTATTATGCTGACATGTGG-TGGT  149
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGTCTA-CTTATCTATGAAATTCCTCTATTATGCTGACATGTGGTTGGT  140

seq1  CCTTAGCTGCTGTG-TCTGATTTGATCAACTTCATTGGAAATGGATCAGA  198
      | ||||||||| || |||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTGCTTTGTTCTGATTTGATCAACTTCATTGGAAATGGATCAGA  190

seq1  GACTCCAAGACAGCATACAGTAGAGTAGAAAAGGACAAATAGAGGTTGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAAGACAGCATACAGTAGAGTAGAAAAGGACAAATAGAGGTTGTG  240

seq1  ACCCTTTATGGCTCTTGTAGCTATGGCCT-CCAGTTCCCAGTAGAGAGTA  297
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCCTTTATGGCTCTTGTAGCTATGGCCTCCCAGTTCCCAGTAGAGAGTA  290

seq1  AATAGAGATAACTGTTTTGTGTGTGTCTTTGTTTTGTTTTGTTTTGTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGATAACTGTTTTGTGTGTGTCTTTGTTTTGTTTTGTTTTGTTTT  340

seq1  GTTTTTACCAGCTTGTCCAGGGCACAGTATCTTTGTTGCCTTCAGAAAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACCAGCTTGTCCAGGGCACAGTATCTTTGTTGCCTTCAGAAAAG  390

seq1  GCTGTGTACACTTTTGTTTCATTGCATCTGTCTTGAAGGCTTAGTTATAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTACACTTTTGTTTCATTGCATCTGTCTTGAAGGCTTAGTTATAA  440

seq1  TTAGATTTAGCAACACGGTAAACAGTTTCTTCTGGTTATAACTGGTAGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTAGCAACACGGTAAACAGTTTCTTCTGGTTATAACTGGTAGTC  490

seq1  TGCCTTCAGGAGGCCTCTGTCCTATATATAGGTAGTGGTAATTTTATTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCAGGAGGCCTCTGTCCTATATATAGGTAGTGGTAATTTTATTCA  540

seq1  ATATGAAGAATCAAAACAAACCTTAAAAAGTTATACTCAGTAATTAAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGAATCAAAACAAACCTTAAAAAGTTATACTCAGTAATTAAATA  590

seq1  AGAACCACGGGCACATTTAACATAAACTATGGGTGTACTCTGGTAAATTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACGGGCACATTTAACATAAACTATGGGTGTACTCTGGTAAATTA  640

seq1  AGAGACGTGTGACCTCTCTAAAGCCAAACCCACACAGAACAGGTAAGCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACGTGTGACCTCTCTAAAGCCAAACCCACACAGAACAGGTAAGCAG  690

seq1  ATATTGAAGGTTTCCAAATAGTCTGTGGACACTGGCAAGCCACTTAATCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAAGGTTTCCAAATAGTCTGTGGACACTGGCAAGCCACTTAATCT  740

seq1  CTATGCCAGCTCAATTATCTGTGTATATTACCAGGATCACTCTGTATTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCAGCTCAATTATCTGTGTATATTACCAGGATCACTCTGTATTGT  790

seq1  AGGTGGGGTAGGGTCCTCACCAGCAAATGGATACAAAGAACTTTGCTTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGTAGGGTCCTCACCAGCAAATGGATACAAAGAACTTTGCTTGA  840

seq1  TGACTTAACATACTGGGTACATACATAGTATCTGGTGTACTGCCTAAAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAACATACTGGGTACATACATAGTATCTGGTGTACTGCCTAAAGG  890

seq1  TGTTGAAGAGATTCCAATTTTTCTTTTTCTTTTAAAATTTTTTTTTGCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGAGATTCCAATTTTTCTTTTTCTTTTAAAATTTTTTTTTGCCC  940

seq1  AGATAGCAACACCAGCCCTATTTAATTCTTTGAGAAATCAATTACTGAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCAACACCAGCCCTATTTAATTCTTTGAGAAATCAATTACTGAGA  990

seq1  ATTACAATAGAGTATTTCTGCTCTACCTCACACCTACCCTTGTATTTCCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATAGAGTATTTCTGCTCTACCTCACACCTACCCTTGTATTTCCC  1040

seq1  CTCACACTGAAGACGACAGGGAGTATGTCGAATGGAAACTTTTCTTGCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTGAAGACGACAGGGAGTATGTCGAATGGAAACTTTTCTTGCCA  1090

seq1  CATCTGCCAAC  1108
      |||||||||||
seq2  CATCTGCCAAC  1101


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