BAC Information

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BAC

Clone NameB6Ng01-188M14
Chromosome2 (Build37)
Map Location 173,492,419 - 173,623,061
singlet/doubletdoublet
Overlap geneRab22a, 1700010B08Rik, Vapb, LOC620189
Upstream geneBmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911
Downstream geneLOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188M14.bB6Ng01-188M14.g
ACCGA012989GA012990
length1,1401,116
definitionB6Ng01-188M14.b B6Ng01-188M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,621,920 - 173,623,061)(173,492,419 - 173,493,519)
sequence
gaattctttcttcactgtcaagtccaagcagtagtgataaatgcaatgtc
tgcaacacggacgagggacaggctgacactcaggggcagctggtgacact
gaaagaatactgcttattgttaatagagatgaaggcagattaggactctg
ggtcaggaacttctgaccagcgtaccccatatttatttaatcagattaaa
catggtagctcacatctgcaatcctagcacttagaaggcagaggcaggga
gttctcaaaaaaccaacagaacaacaaagtacaaacaaatggacagaggg
aagaataaattcagctctctctcaggagctgtttgaaccttgggccattc
agccatcacaaagcatacattgagtgcctactgtgtactgtacactcagt
tgcaaagctaaccggggcaacttctgctcccccatagcaaccgcttgtga
gaatcccaggggtgaacactagtgaggagagtccaagcccacctgccttc
cttacactttccaagtgtccccaaaacccaggatctgggaggcagagaag
caacactgctgaacagaaagagagcctcaaggctctttcaaaatgacctc
gaaatgaatccctctccactgaaaactgcctctgctactcaagccttaat
tcagaggtaaagttgattgccagccccccacctccttgttccaagagaca
ccataatggctgactgggtccgctctcctgggaggagttcaggggccact
atcccttcccttcctgccacctggccagtcccggtggcctccacaggctg
gaaaagtgattgagaaacaagacacatagaaagatgtcattgcagaccag
cgccagatgcacagacattaaattaaaggtctgctcagccacccccctcc
tggggagggggaggaagatcgtttgagaagaggaaatgctacagtcaaat
ccccaatagcgcctctgcttctcggggggccgagccttggcccacgaccc
aaacagatggtaaacactgaacattttagaagtaattaaatccaattgat
ccccaatttatcacccggatatagaatactaattcatcagttcgtgctcc
acccacagatcattcacctctgggccttaataagaaattg
gaattcaaaccagccagggctaaatagcaagatcctgtctacaaacaaaa
cagaagaatactcatagtgttttatattgcatgcaggacagtgtgtaagt
tagggtgattccacacccttcccaaacctgtcagtccactttgaagccag
ccaccgtgcctccccactacctatggtgttctctccttccctacacttat
ccctgtctattcaaatatttgcctagttccaagtgtgctgttcattcagc
caacagctttttaatcttaccagtgtctttttttttttttaatgtacgta
cactgtagctatcctcagatactccagaagaggccatcagatttcattat
ggatagttgtgagccaccatgtggttgctggaatttgaactcgggacctt
cggaagaacagtcggcgctcttaaccactgagccatctcaccagcccatc
agtgtcttttgaagaacaatttttccattctattcgtaacattgacttgt
gtgttccttgcgtcccaaatgagaaggattttctcctgtgttctagattc
tgttttttagttttggttttgtttctatgttttaagacattctcaatagg
taccctggctggcctagaattcatagagatatgctgcctctgcctcccaa
gttctgggattaaaatgtgttgttcttgttctagaagtcccatagcttca
ttctaagattggcctgagggctgtttctcctagtgtgtcttctgtgtaag
gtgatgcttttcctatggtcactcgaggcattggttagtgtggagttcag
tggctgttctagtaaatggcctttggacctctatcaggagtgggctgcta
tgtagggaagttctcactttgcaaatccggcagtcatctagttgtaatac
ttttcaggtttgttttgtgcttgtagactctgtatcctgtgttctacatt
tttaagggacatagtgcccaattcttcaaacatctactaaaaatctgcca
atcttttctgactagtttggggaaaattgataaccctaacagtgctctga
atccatgaacatgttaagacttcctctgtttctttaaggtctcaaaaagg
gtgtgggtttctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_173621920_173623061
seq2: B6Ng01-188M14.b_48_1187 (reverse)

seq1  CAATTTCTAATTAAGCCCCAGAGGTG-ATGA-CTGT-GGTGGAGCACGGA  47
      |||||||| |||||| |||||||||| |||| |||| ||||||||||| |
seq2  CAATTTCTTATTAAGGCCCAGAGGTGAATGATCTGTGGGTGGAGCACGAA  50

seq1  CTGATTGATTAGTATTCTATATCCGGGTGATAAATTTGGGGATCAAATTG  97
      |||||  ||||||||||||||||||||||||||| ||||||||| |||||
seq2  CTGATGAATTAGTATTCTATATCCGGGTGATAAA-TTGGGGATC-AATTG  98

seq1  GTTTTAAATTAACTTCTAAAAATGTTCAGTGTTTACCATCTGGTTTGGGT  147
      | |||||  | |||||| ||||||||||||||||||||||| ||||||||
seq2  GATTTAA--TTACTTCT-AAAATGTTCAGTGTTTACCATCT-GTTTGGGT  144

seq1  CGTGGG-CAAGGCTCGGCCCCCCGAG-AGCAGAGGCGCTATTTGGGGATT  195
      |||||| ||||||||||||||||||| ||||||||||||| |||||||||
seq2  CGTGGGCCAAGGCTCGGCCCCCCGAGAAGCAGAGGCGCTA-TTGGGGATT  193

seq1  TGACTGTAGCATTTCCTCTTCTCAAACGATCTTCCTCCCCCTCCCCAGGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTAGCATTTCCTCTTCTCAAACGATCTTCCTCCCCCTCCCCAGGA  243

seq1  GGGGGGTGGCTGAGCAGACCTTTAATTTAATGTCTGTGCATCTGGCGCTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGGCTGAGCAGACCTTTAATTTAATGTCTGTGCATCTGGCGCTG  293

seq1  GTCTGCAATGACATCTTTCTATGTGTCTTGTTTCTCAATCACTTTTCCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAATGACATCTTTCTATGTGTCTTGTTTCTCAATCACTTTTCCAG  343

seq1  CCTGTGGAGGCCACCGGGACTGGCCAGGTGGCAGGAAGGGAAGGGATAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGAGGCCACCGGGACTGGCCAGGTGGCAGGAAGGGAAGGGATAGT  393

seq1  GGCCCCTGAACTCCTCCCAGGAGAGCGGACCCAGTCAGCCATTATGGTGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTGAACTCCTCCCAGGAGAGCGGACCCAGTCAGCCATTATGGTGT  443

seq1  CTCTTGGAACAAGGAGGTGGGGGGCTGGCAATCAACTTTACCTCTGAATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGAACAAGGAGGTGGGGGGCTGGCAATCAACTTTACCTCTGAATT  493

seq1  AAGGCTTGAGTAGCAGAGGCAGTTTTCAGTGGAGAGGGATTCATTTCGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGAGTAGCAGAGGCAGTTTTCAGTGGAGAGGGATTCATTTCGAG  543

seq1  GTCATTTTGAAAGAGCCTTGAGGCTCTCTTTCTGTTCAGCAGTGTTGCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTGAAAGAGCCTTGAGGCTCTCTTTCTGTTCAGCAGTGTTGCTT  593

seq1  CTCTGCCTCCCAGATCCTGGGTTTTGGGGACACTTGGAAAGTGTAAGGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAGATCCTGGGTTTTGGGGACACTTGGAAAGTGTAAGGAA  643

seq1  GGCAGGTGGGCTTGGACTCTCCTCACTAGTGTTCACCCCTGGGATTCTCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGGCTTGGACTCTCCTCACTAGTGTTCACCCCTGGGATTCTCA  693

seq1  CAAACGGTTGCTATGGGGGAGCAGAAGTTGCCCCGGTTAGCTTTGCAACT  745
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCGGTTGCTATGGGGGAGCAGAAGTTGCCCCGGTTAGCTTTGCAACT  743

seq1  GAGTGTACAGTACACAGTAGGCACTCAATGTATGCTTTGTGATGGCTGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTACAGTACACAGTAGGCACTCAATGTATGCTTTGTGATGGCTGAA  793

seq1  TGGCCCAAGGTTCAAACAGCTCCTGAGAGAGAGCTGAATTTATTCTTCCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAAGGTTCAAACAGCTCCTGAGAGAGAGCTGAATTTATTCTTCCC  843

seq1  TCTGTCCATTTGTTTGTACTTTGTTGTTCTGTTGGTTTTTTGAGAACTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCATTTGTTTGTACTTTGTTGTTCTGTTGGTTTTTTGAGAACTCC  893

seq1  CTGCCTCTGCCTTCTAAGTGCTAGGATTGCAGATGTGAGCTACCATGTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTTCTAAGTGCTAGGATTGCAGATGTGAGCTACCATGTTT  943

seq1  AATCTGATTAAATAAATATGGGGTACGCTGGTCAGAAGTTCCTGACCCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGATTAAATAAATATGGGGTACGCTGGTCAGAAGTTCCTGACCCAG  993

seq1  AGTCCTAATCTGCCTTCATCTCTATTAACAATAAGCAGTATTCTTTCAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAATCTGCCTTCATCTCTATTAACAATAAGCAGTATTCTTTCAGT  1043

seq1  GTCACCAGCTGCCCCTGAGTGTCAGCCTGTCCCTCGTCCGTGTTGCAGAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAGCTGCCCCTGAGTGTCAGCCTGTCCCTCGTCCGTGTTGCAGAC  1093

seq1  ATTGCATTTATCACTACTGCTTGGACTTGACAGTGAAGAAAGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTTATCACTACTGCTTGGACTTGACAGTGAAGAAAGAATTC  1140

seq1: chr2_173492419_173493519
seq2: B6Ng01-188M14.g_69_1184

seq1  GAATTCAAACCAGCCAGGGCTAAATAGCAAGATCCTGTCTACAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCAGCCAGGGCTAAATAGCAAGATCCTGTCTACAAACAAAA  50

seq1  CAGAAGAATACTCATAGTGTTTTATATTGCATGCAGGACAGTGTGTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAATACTCATAGTGTTTTATATTGCATGCAGGACAGTGTGTAAGT  100

seq1  TAGGGTGATTCCACACCCTTCCCAAACCTGTCAGTCCACTTTGAAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGATTCCACACCCTTCCCAAACCTGTCAGTCCACTTTGAAGCCAG  150

seq1  CCACCGTGCCTCCCCACTACCTATGGTGTTCTCTCCTTCCCTACACTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGTGCCTCCCCACTACCTATGGTGTTCTCTCCTTCCCTACACTTAT  200

seq1  CCCTGTCTATTCAAATATTTGCCTAGTTCCAAGTGTGCTGTTCATTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTATTCAAATATTTGCCTAGTTCCAAGTGTGCTGTTCATTCAGC  250

seq1  CAACAGCTTTTTAATCTTACCAGTGTCTTTTTTTTTTTTTAATGTACGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTTTTTAATCTTACCAGTGTCTTTTTTTTTTTTTAATGTACGTA  300

seq1  CACTGTAGCTATCCTCAGATACTCCAGAAGAGGCCATCAGATTTCATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGCTATCCTCAGATACTCCAGAAGAGGCCATCAGATTTCATTAT  350

seq1  GGATAGTTGTGAGCCACCATGTGGTTGCTGGAATTTGAACTCGGGACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTTGTGAGCCACCATGTGGTTGCTGGAATTTGAACTCGGGACCTT  400

seq1  CGGAAGAACAGTCGGCGCTCTTAACCACTGAGCCATCTCACCAGCCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGAACAGTCGGCGCTCTTAACCACTGAGCCATCTCACCAGCCCATC  450

seq1  AGTGTCTTTTGAAGAACAATTTTTCCATTCTATTCGTAACATTGACTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTTTGAAGAACAATTTTTCCATTCTATTCGTAACATTGACTTGT  500

seq1  GTGTTCCTTGCGTCCCAAATGAGAAGGATTTTCTCCTGTGTTCTAGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTTGCGTCCCAAATGAGAAGGATTTTCTCCTGTGTTCTAGATTC  550

seq1  TGTTTTTTAGTTTTGGTTTTGTTTCTATGTTTTAAGACATTCTCAATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTAGTTTTGGTTTTGTTTCTATGTTTTAAGACATTCTCAATAGG  600

seq1  TACCCTGGCTGGCCTAGAATTCATAGAGATATGCTGCCTCTGCCTCCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGCTGGCCTAGAATTCATAGAGATATGCTGCCTCTGCCTCCCAA  650

seq1  GTTCTGGGATTAAAATGTGTTGTTCTTGTTCTAGAAGTCCCATAGCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGATTAAAATGTGTTGTTCTTGTTCTAGAAGTCCCATAGCTTCA  700

seq1  TTCTAAGATTGGCCTGAGGGCTGTTTCTCCTAGTGTGTCTTCTGTGTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGATTGGCCTGAGGGCTGTTTCTCCTAGTGTGTCTTCTGTGTAAG  750

seq1  GTGATGCTTTTCCTATGGTCACTCGAGGCATTGGTTAGTGTGGAGTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCTTTTCCTATGGTCACTCGAGGCATTGGTTAGTGTGGAGTTCAG  800

seq1  TGGCTGTTCTAGTAAATGGCCTTTGGACCTCTATCAGGAGTGGGCTGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTCTAGTAAATGGCCTTTGGACCTCTATCAGGAGTGGGCTGCTA  850

seq1  TGTAGGGAAGTTCTCACTTTGCAAATCCGGCAGTCATCTAGTTGTAATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGAAGTTCTCACTTTGCAAATCCGGCAGTCATCTAGTTGTAATAC  900

seq1  TTTTCAAGTTTGTTTTGTGCTTGTAGACTCTGTAT-CTGTG-TCTACATT  948
      |||||| |||||||||||||||||||||||||||| ||||| ||||||||
seq2  TTTTCAGGTTTGTTTTGTGCTTGTAGACTCTGTATCCTGTGTTCTACATT  950

seq1  TTT-AGGGACATAGTGCCCAATTCTTCAAACATCTACTAAAAATCTGCCA  997
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGGACATAGTGCCCAATTCTTCAAACATCTACTAAAAATCTGCCA  1000

seq1  ATC--TTCTGACTAGTTTGGGGAAAATTGATAA-CCTAACAGTGCTCTG-  1043
      |||  |||||||||||||||||||||||||||| ||||||||||||||| 
seq2  ATCTTTTCTGACTAGTTTGGGGAAAATTGATAACCCTAACAGTGCTCTGA  1050

seq1  ATCCATGAACATGTT-AGAC-TCCTCTG-TTCTTT-AGGTCTCAAAA---  1086
      ||||||||||||||| |||| ||||||| |||||| |||||||||||   
seq2  ATCCATGAACATGTTAAGACTTCCTCTGTTTCTTTAAGGTCTCAAAAAGG  1100

seq1  GTGTGTG-TTCTTTCT  1101
      ||||| | ||||||||
seq2  GTGTGGGTTTCTTTCT  1116