BAC Information

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BAC

Clone NameB6Ng01-188N07
Chromosome2 (Build37)
Map Location 55,223,721 - 55,357,854
singlet/doubletdoublet
Overlap geneKcnj3
Upstream geneLOC100042878, Galnt13, LOC666936
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188N07.bB6Ng01-188N07.g
ACCGA013021GA013022
length1,207491
definitionB6Ng01-188N07.b B6Ng01-188N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,223,721 - 55,224,641)(55,357,359 - 55,357,854)
sequence
gaattcttagttgtttgttatatctcccttttgatttctgatttttctta
atttggatattctcactgtctattagtatggataacggttcaactatctt
attgattttcttcaaagaatcaactctttgtttgttgattctttgtattg
ctctgtttctactttattgatttcagtcatgaatttgttctttttctgct
atctactgctcttgagtgtgtttgcttctttatttttatagctctagcct
tcagatatattgttgaatcactatgatgagaaatctctaatttcttaatt
gctctgaacattcctcttagcattgttttcattgtgtctcatatgtttgg
gcatgtgtgcattcattttctttgaattttggaaactcattcatttcttt
tcttttctcttcttttcttttctcctcccttcttttcttttcttttcttt
tcttttctcttctcttctcttctcttctcttcttttcttttcttttcttt
tctttttcctctcctctcctctcctctcctctcttcatttttttcttttc
cccagtattcattgagtacaaagttcttcagttactttgagttttcagac
tttctttcatttctgttgttgaagttcagttttaatccatggtggtctga
ttaaatacaaggggttatttctattttctcatacctgttgagacttgctc
tgtgaccgagtatatagtcaattatggagatgtttgcatgagaaaaagat
atattcttgtgtgtttgggtgaaatatgtttttgctgttattgtgttttt
ttgaaaattttttattagatatattctttatttatacttcaaatgtcatc
tcctttcctggcttaccctatgaaaaccccctatcacattcccactcttc
cttcttctataaaggtgtaccccaaccactgaccctggcctgggcattcc
tctacactggggcatcatactcccacaggaccaagggcctctcctcccat
tgattccagaacaagaccatcctttgctacaaatgatgctgtgtcaaagg
gtacctccatgtgtacttctattggttggtggtttaatcctgggaagctc
tgggtggttaatgctagtgattacatgcctgtttcctctatgaagcttac
aaaatccgttggctcttcagtgggaaacctgtctcagtccaatggtttgg
ccagtga

tctggaggagtctctttgttaaggcataaaactgtttatgaggagggacc
tggtaagtcacttctgaaaggctacacctcctaataccatgactctgcct
gagaggtttcacatagggatttttgggaaacactatccacagaacatatt
ttaacacgccacaattaatgctggaaaatagttagtacttttgacttaat
ctgctaaatagggccctctattacagaattttaaaatacaaatatattaa
attatgtgtgtatgtgtgtggctgcatgaatgtgtgtgtgcaatgatgtg
catgagtacacatgtgtgtttgtgtgtgagagagagagagagagacagag
agagagacagatacagagacagagagacagattcagagagacagagagag
agaaagtctgtgtgtgttggtgtctatagaagctggaggattggaggagg
atgtcaaattgtctggatttgaaattatagcctgttgtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55223721_55224641
seq2: B6Ng01-188N07.b_324_1251

seq1  GAAATCTCTAATTTCTTAATTGCTCTGAACATTCCTCTTAGCATTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCTAATTTCTTAATTGCTCTGAACATTCCTCTTAGCATTGTTTT  50

seq1  CATTGTGTCTCATATGTTTGGGCATGTGTGCATTCATTTTCTTTGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTCTCATATGTTTGGGCATGTGTGCATTCATTTTCTTTGAATTT  100

seq1  TGGAAACTCATTCATTTCTTTTCTTTTCTCTTCTTTTCTTTTCTCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTCATTCATTTCTTTTCTTTTCTCTTCTTTTCTTTTCTCCTCCC  150

seq1  TTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTCTTCTCTTCTCTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTCTTCTCTTCTCTTCTC  200

seq1  TTCTTTTCTTTTCTTTTCTTTTCTTTTTCCTCTCCTCTCCTCTCCTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTCTTTTCTTTTCTTTTTCCTCTCCTCTCCTCTCCTCTCC  250

seq1  TCTCTTCATTTTTTTCTTTTCCCCAGTATTCATTGAGTACAAAGTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCATTTTTTTCTTTTCCCCAGTATTCATTGAGTACAAAGTTCTTC  300

seq1  AGTTACTTTGAGTTTTCAGACTTTCTTTCATTTCTGTTGTTGAAGTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTGAGTTTTCAGACTTTCTTTCATTTCTGTTGTTGAAGTTCAG  350

seq1  TTTTAATCCATGGTGGTCTGATTAAATACAAGGGGTTATTTCTATTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCCATGGTGGTCTGATTAAATACAAGGGGTTATTTCTATTTTCT  400

seq1  CATACCTGTTGAGACTTGCTCTGTGACCGAGTATATAGTCAATTATGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTGTTGAGACTTGCTCTGTGACCGAGTATATAGTCAATTATGGAG  450

seq1  ATGTTTGCATGAGAAAAAGATATATTCTTGTGTGTTTGGGTGAAATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCATGAGAAAAAGATATATTCTTGTGTGTTTGGGTGAAATATGT  500

seq1  TTTTGCTGTTATTGTGTTTTTTTGAAAATTTTTTATTAGATATATTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTTATTGTGTTTTTTTGAAAATTTTTTATTAGATATATTCTTT  550

seq1  ATTTATACTTCAAATGTCATCTCCTTTCCTGGCTTACCCTATGAAAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACTTCAAATGTCATCTCCTTTCCTGGCTTACCCTATGAAAACCC  600

seq1  CCTATCACATTCCCACTCTTCCTTCTTCTATAAAGGTGTACCCCAACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCACATTCCCACTCTTCCTTCTTCTATAAAGGTGTACCCCAACCAC  650

seq1  TGACCCTGGCCT-GGCATTCCTCTACACTGGGGCATCATACTCCCACAGG  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGGCCTGGGCATTCCTCTACACTGGGGCATCATACTCCCACAGG  700

seq1  ACCAAGGGCCTCTCCTCCCATTGATTCCAG-ACAAGACCATCCTTTGCTA  748
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACCAAGGGCCTCTCCTCCCATTGATTCCAGAACAAGACCATCCTTTGCTA  750

seq1  CAAATGATGCTGTGTCAAAGGGTAACTCCATGTGTAC-TCTA-TGGTTGG  796
      |||||||||||||||||||||||| |||||||||||| |||| |||||||
seq2  CAAATGATGCTGTGTCAAAGGGTACCTCCATGTGTACTTCTATTGGTTGG  800

seq1  TGGTTTAATCCCTGGGAGCTCTGGGT-GTTATGGTTAGTTGATAC-TG-C  843
      |||||||||||  || |||||||||| ||||  | ||||   ||| || |
seq2  TGGTTTAATCCTGGGAAGCTCTGGGTGGTTAATGCTAGTGATTACATGCC  850

seq1  TGTTCCTCCTATGAGGC-TACAAATCCCTTTGGCTCCTTCAGTTGGGAAA  892
      |||| |  |||||| || ||||||  || |||||| |||||| |||||||
seq2  TGTTTCCTCTATGAAGCTTACAAAATCCGTTGGCT-CTTCAG-TGGGAAA  898

seq1  CCTGTGCTCAGTCCAATGGTT--GGCAGTGA  921
      ||||| |||||||||||||||  | ||||||
seq2  CCTGT-CTCAGTCCAATGGTTTGGCCAGTGA  928


seq1: chr2_55357359_55357854
seq2: B6Ng01-188N07.g_66_561 (reverse)

seq1  TTACTACAGGCTATAATTTCAAATCCAGACAATTTGACATCCTCCTCCAA  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACAGGCTATAATTTCAAATCCAGACAATTTGACATCCTCCTCCAA  50

seq1  TCCTCCAGCTTCTATAGACACCTGCACACACAGACTTTCTCTCTCTCTGT  100
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  TCCTCCAGCTTCTATAGACACCAACACACACAGACTTTCTCTCTCTCTGT  100

seq1  CTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCTCTCTCTGTCTCT  150
      |||||||  ||||||||||||||||||| |||||||||||||||||||||
seq2  CTCTCTGAATCTGTCTCTCTGTCTCTGTATCTGTCTCTCTCTCTGTCTCT  150

seq1  CTCTCTCTCTCTCACACACAAACACACATGTGTACTCATGCACATCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCACACACAAACACACATGTGTACTCATGCACATCATTG  200

seq1  CACACACACATTCATGCAGCCACACACATACACACATAATTTAATATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATTCATGCAGCCACACACATACACACATAATTTAATATATT  250

seq1  TGTATTTTAAAATTCTGTAATAGAGGGCCCTATTTAGCAGATTAAGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTAAAATTCTGTAATAGAGGGCCCTATTTAGCAGATTAAGTCAA  300

seq1  AAGTACTAACTATTTTCCAGCATTAATTGTGGCGTGTTAAAATATGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTAACTATTTTCCAGCATTAATTGTGGCGTGTTAAAATATGTTCT  350

seq1  GTGGATAGTGTTTCCCAAAAATCCCTATGTGAAACCTCTCAGGCAGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAGTGTTTCCCAAAAATCCCTATGTGAAACCTCTCAGGCAGAGTC  400

seq1  ATGGTATTAGGAGGTGTAGCCTTTCAGAAGTGACTTACCAGGTCCCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATTAGGAGGTGTAGCCTTTCAGAAGTGACTTACCAGGTCCCTCCT  450

seq1  CATAAACAGTTTTATGCCTTAACAAAGAGACTCCTCCAGAGAATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACAGTTTTATGCCTTAACAAAGAGACTCCTCCAGAGAATTC  496


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