BAC Information

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BAC

Clone NameB6Ng01-189A20
Chromosome2 (Build37)
Map Location 26,028,291 - 26,168,199
singlet/doubletdoublet
Overlap geneLhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik
Upstream geneNrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik
Downstream geneGpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189A20.bB6Ng01-189A20.g
ACCGA013179GA013180
length757814
definitionB6Ng01-189A20.b B6Ng01-189A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,167,445 - 26,168,199)(26,028,291 - 26,029,088)
sequence
gaattccaaactgttgtgaaagagagacaggaagacagacaggaaagaga
ggggaggggatagagccagatagacctgtaaggaactgtactcagtttta
ccctggtctcttaaataagttcactggtttgaagaaagacttgcttctgt
ttcttcttctccttcttttgtttgttttggtttttttgttttgttttgtt
tttttgtcttttttgtttttgttgtttttttgagacagggtttctctgtg
cagccctggctgtcctggaattcactctgtagaccaggctggccttgaac
tcagaaatctggctgcctctgcctcccaagtgctgggattaaaggtgtgt
gccatcactgcccagcaacttgcttcttaaatgtaggcgtgagctccttt
ctgctgtcctgatcaaacacaccctcctgtgacagaatcatccactgctg
ttcccttgggagcttcaaaacattggtgaatatagtagcaagtagataga
tggatctatgtcacatccccataggagccaagatggaaacagtctgtccc
acccacgagagcctcaggaagatgacatacgcacacagacacacacagga
aaatagctctaagtccacgtgagatggaatgcactgtcagcatgaggcac
tgacagcgcatcattccctgaggcacactcactggctgttgcaggctttg
tcaccccaggttgtcctgggggcctgttggagtaggtggaccaagcagga
agtggcc
gaattcctagaaaggacttcaaggcagacaacaggcctgtcactgcacag
agcagctaatggtgtgtggacgagcttgtgagcacaaggccagcaaggag
acagaacccacataggaggtagtgtagtggcatggtagtgtagtggcatg
gggcctggggagcctcagcctccgcggcgtggaagggcaggctgtggcct
tctgcatcttagaggtgagggcaaggactgctctggtagtgaagttagat
atggaaaatgggaagaggccaacaagcctgcagctactcagactgtttca
tcaaacacagaactgtgacccggaaatgctcctgccaggaagcatcccat
gatgatgtcacaagaaaggtctacctggagagggaggcaaacacacagcc
cattgctgctgacttgtccctatggtgagatccttgtcagaaacaaatta
gagtaggaaggagggtctgctcctccacgcccccatgtggggacagggga
gctaagtcagctgacctgtggtggtggcaggaacctgaagggcagttggc
tcatatctttgtcttagagtttctgtcactgtaataaaacactctgacca
atttgcaatttgaggagaaaaaaggtttattatatctttatgcttaaaaa
aaaaaagttccatcactgagggatgtcagagcaggacctcaagcagggca
tgaacctggaggcagaatctgaagaagcagtcattggggaacacttgcct
acttgagctttctccctccccttcctccctccccgctcctcccctctctc
tttcttgagacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_26167445_26168199
seq2: B6Ng01-189A20.b_46_802 (reverse)

seq1  GGCCACTTCCTGCTTGGTCCACCTGCTCCAACAGGCCCCAGGAACAACCT  50
      |||||||||||||||||||||||| ||||||||||||||  | |||||||
seq2  GGCCACTTCCTGCTTGGTCCACCTACTCCAACAGGCCCCCAGGACAACCT  50

seq1  -GGGTGACAAAGCCTGCAACAGCCAGTGAGTGTGCCTCA-GGAATGCTGC  98
       |||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  GGGGTGACAAAGCCTGCAACAGCCAGTGAGTGTGCCTCAGGGAATGATGC  100

seq1  GCTGTCAGTGCCTCATGCTGACAGTGCATTCCATCTCACGTGGACTTAGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAGTGCCTCATGCTGACAGTGCATTCCATCTCACGTGGACTTAGA  150

seq1  GCTATTTTCCTGTGTGTGTCTGTGTGCGTATGTCATCTTCCTGAGGCTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTCCTGTGTGTGTCTGTGTGCGTATGTCATCTTCCTGAGGCTCT  200

seq1  CGTGGGTGGGACAGACTGTTTCCATCTTGGCTCCTATGGGGATGTGACAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGTGGGACAGACTGTTTCCATCTTGGCTCCTATGGGGATGTGACAT  250

seq1  AGATCCATCTATCTACTTGCTACTATATTCACCAATGTTTTGAAGCTCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCATCTATCTACTTGCTACTATATTCACCAATGTTTTGAAGCTCCC  300

seq1  AAGGGAACAGCAGTGGATGATTCTGTCACAGGAGGGTGTGTTTGATCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAACAGCAGTGGATGATTCTGTCACAGGAGGGTGTGTTTGATCAGG  350

seq1  ACAGCAGAAAGGAGCTCACGCCTACATTTAAGAAGCAAGTTGCTGGGCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGAAAGGAGCTCACGCCTACATTTAAGAAGCAAGTTGCTGGGCAG  400

seq1  TGATGGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGCCAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGCCAGA  450

seq1  TTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAATTCCAGGACAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAATTCCAGGACAGCC  500

seq1  AGGGCTGCACAGAGAAACCCTGTCTCAAAAAAACAACAAAAACAAAAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGCACAGAGAAACCCTGTCTCAAAAAAACAACAAAAACAAAAAAG  550

seq1  ACAAAAAAACAAAACAAAACAAAAAAACCAAAACAAACAAAAGAAGGAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACAAAACAAAACAAAAAAACCAAAACAAACAAAAGAAGGAGA  600

seq1  AGAAGAAACAGAAGCAAGTCTTTCTTCAAACCAGTGAACTTATTTAAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAACAGAAGCAAGTCTTTCTTCAAACCAGTGAACTTATTTAAGAG  650

seq1  ACCAGGGTAAAACTGAGTACAGTTCCTTACAGGTCTATCTGGCTCTATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGTAAAACTGAGTACAGTTCCTTACAGGTCTATCTGGCTCTATCC  700

seq1  CCTCCCCTCTCTTTCCTGTCTGTCTTCCTGTCTCTCTTTCACAACAGTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCTCTTTCCTGTCTGTCTTCCTGTCTCTCTTTCACAACAGTTT  750

seq1  GGAATTC  755
      |||||||
seq2  GGAATTC  757

seq1: chr2_26028291_26029088
seq2: B6Ng01-189A20.g_68_868

seq1  GAATTCCTAGAAAGGACTTCAAGGCAGACAACAGGCCTGTCACTGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAAAGGACTTCAAGGCAGACAACAGGCCTGTCACTGCACAG  50

seq1  AGCAGCTAATGGTGTGTGGACGAGCTTGTGAGCACAAGGCCAGCAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTAATGGTGTGTGGACGAGCTTGTGAGCACAAGGCCAGCAAGGAG  100

seq1  ACAGAACCCACATAGGAGGTAGTGTAGTGGCATGGTAGTGTAGTGGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCCACATAGGAGGTAGTGTAGTGGCATGGTAGTGTAGTGGCATG  150

seq1  GGGCCTGGGGAGCCTCAGCCTCCGCGGCGTGGAAGGGCAGGCTGTGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGGGAGCCTCAGCCTCCGCGGCGTGGAAGGGCAGGCTGTGGCCT  200

seq1  TCTGCATCTTAGAGGTGAGGGCAAGGACTGCTCTGGTAGTGAAGTTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCTTAGAGGTGAGGGCAAGGACTGCTCTGGTAGTGAAGTTAGAT  250

seq1  ATGGAAAATGGGAAGAGGCCAACAAGCCTGCAGCTACTCAGACTGTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATGGGAAGAGGCCAACAAGCCTGCAGCTACTCAGACTGTTTCA  300

seq1  TCAAACACAGAACTGTGACCCGGAAATGCTCCTGCCAGGAAGCATCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACACAGAACTGTGACCCGGAAATGCTCCTGCCAGGAAGCATCCCAT  350

seq1  GATGATGTCACAAGAAAGGTCTACCTGGAGAGGGAGGCAAACACACAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGTCACAAGAAAGGTCTACCTGGAGAGGGAGGCAAACACACAGCC  400

seq1  CATTGCTGCTGACTTGTCCCTATGGTGAGATCCTTGTCAGAAACAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTGCTGACTTGTCCCTATGGTGAGATCCTTGTCAGAAACAAATTA  450

seq1  GAGTAGGAAGGAGGGTCTGCTCCTCCACGCCCCCATGTGGGGACAGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGAAGGAGGGTCTGCTCCTCCACGCCCCCATGTGGGGACAGGGGA  500

seq1  GCTAAGTCAGCTGACCTGTGGTGGTGGCAGGAACCTGAAGGGCAGTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTCAGCTGACCTGTGGTGGTGGCAGGAACCTGAAGGGCAGTTGGC  550

seq1  TCATATC-TTGTCTTAGAGTTTCTGTCACTGTAATAAAACACTCTGACCA  599
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTTTGTCTTAGAGTTTCTGTCACTGTAATAAAACACTCTGACCA  600

seq1  A-TTGCAATTTGAGGAGAAAAAAGGTTTATTATATC-TTATGCTTAAAAA  647
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTTGCAATTTGAGGAGAAAAAAGGTTTATTATATCTTTATGCTTAAAAA  650

seq1  AAAAAAG-TCCATCACTGAGGGATGTCAGAGCAGGACCTCAAGCAGGGCA  696
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTTCCATCACTGAGGGATGTCAGAGCAGGACCTCAAGCAGGGCA  700

seq1  GGAACCTGGAGGCAGAAACTGAAGAAGCAGCCATTGGGGAACACTTGCCT  746
       |||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TGAACCTGGAGGCAGAATCTGAAGAAGCAGTCATTGGGGAACACTTGCCT  750

seq1  AC-TGAGCTTTCTCCCTCCCCTTCCTCCCTCCCCGCTCCTCCCCTCCCTC  795
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTTGAGCTTTCTCCCTCCCCTTCCTCCCTCCCCGCTCCTCCCCTCTCTC  800

seq1  TCT  798
      |  
seq2  T--  801