BAC Information

Click to search

BAC

Clone NameB6Ng01-189F19
Chromosome2 (Build37)
Map Location 154,627,354 - 154,824,510
singlet/doubletdoublet
Overlap geneRaly, Eif2s2
Upstream geneLOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692
Downstream genea, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189F19.bB6Ng01-189F19.g
ACCGA013406GA013407
length1,076829
definitionB6Ng01-189F19.b B6Ng01-189F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,823,457 - 154,824,510)(154,627,354 - 154,628,177)
sequence
actcttagagccgaggatgaccttgaaccctgatcctgcctctctatcac
ccgtgctaggattttgtatcactccacctggctgttgtttgagggatttg
ctcctccccctttctctttctcctcttctgtgataattgtaaatttgacc
catgtggcttagtatcagagggcagttttgatacactgctggctaaaact
gttggcatgttcttgccatttgtccttttgagaattgtgcgattcattgc
ccacttgctgggcagattatttgtccatttaactttttggatttcttatg
tattctgggtcttaatccttcgtcaaagattttctgttgttcagaagact
tccttatgcccatctttctttcctgtttctctcttttccattcttctccc
tcaccccctctctttctttcttgtgcaggcgctcacacaactcaaacgtg
attgagtctcacattcctcctgcttccacctcccaagttctagagttacc
ggcatgtgctatgttgccctgctaggctgccttttcattctggcaattgt
ttcttgtgtggtttttatttttaaagcatgatcccccttgccaattcctg
ctgttttctacgctattagaaggcagaaggtcatcacttacgcccagatc
ctgaagtgttccttaatgttttccttgaatgcttgggaactttcacgtgt
taccataagccctttcatccattttggggcttgtttttgtgcaagatgag
gcagagatgtagtctctctacacgtgggcatccagctttcttagtgcctg
ccactttaacaagttgtctttttccagtttatgctttttggtgccttttg
ctgagaatcatgtgtttgtagctacatgagtttgtttctgggccctttta
gtttcaattctttggatccaagaatttttgaacagtgggatgatgacaag
agaatgtggttttttgggaaagcagaaggaatatggctcttctagggcag
aacttgggttctgaagggtattctacggatcctggccagtgaagtgcctc
cttgaatagatggaaaggtaaatgtt
gaattcaatgctctgtgggcaccaggcacaaaagtgatatagattgaaaa
accaaaaaaaaaaaaaaaaaaagtggtatagaaacaaacatgcaggggct
ggtgagatggctcagtgggtaagagcacccgactgctcttccaaaggtcc
cgagttcaaatcccagcaaccacatggtggctcacaaccatccataacga
gatctgactccctcttctggagtgtctgaagacagctacagtgtacttac
atataataaataaataaataaataaatctttaaaaaaaaaaaaagaaaca
gaaacaaacatgcaggtaaaatactcatacacataaaatacgataataaa
ataattaaaaaataaatctttaaaaatactttttaaaaaatattaagaag
gttgaagcatgtttttaaggttagagataatgttgaaggcagtgaattgg
agaccaccaaggcattttctggttctaagtgacctataaatgtctttgtc
tttggaggagataaaaatgctgagaatgaggtagtttcctatctttgaca
actaaacttgggacaagaaggtttactctatttatatggcactaataaac
tggagaaataatttttctcactgaaattccattttctcataaggtgggtg
ttaatattctatagctgtttcccttactgtgtaaggaaaatgagggggtg
ctggagagatggcttagaggttaagagcactcactgacttgctcttcttc
cagaggtccttgagttcaattcccagcaaccacgttggttagctacaacc
atctggaaatggggccctgatgtcctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154823457_154824510
seq2: B6Ng01-189F19.b_54_1129 (reverse)

seq1  AACATTTA-CTATCCATCTA-TCAAG--AGCAC-TCACT-GCCA-GATCC  43
      |||||||| || |||||||| |||||   |||| ||||| |||| |||||
seq2  AACATTTACCTTTCCATCTATTCAAGGAGGCACTTCACTGGCCAGGATCC  50

seq1  GTAG-ATACCC-TCAGAACCCCAAGTTCTGCCCTAG-AGAGCCATAT--C  88
      |||| |||||| |||||| ||||||||||||||||| ||||||||||  |
seq2  GTAGAATACCCTTCAGAA-CCCAAGTTCTGCCCTAGAAGAGCCATATTCC  99

seq1  CTCTGCTTTCC--AAAAACCACA-TCTC-TGTCATCATCCCACTGT--CA  132
       ||||||||||  |||||||||| |||| |||||||||||||||||   |
seq2  TTCTGCTTTCCCAAAAAACCACATTCTCTTGTCATCATCCCACTGTTCAA  149

seq1  AAATTCTTGGATCCAAAGAATTGAAACT-AAAGGGCCCAGAAACAAACTC  181
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAATTCTTGGATCCAAAGAATTGAAACTAAAAGGGCCCAGAAACAAACTC  199

seq1  ATGTAGCTACAAACACATGATTCTCAGC-AAAGGCACC-AAAAGCATAAA  229
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  ATGTAGCTACAAACACATGATTCTCAGCAAAAGGCACCAAAAAGCATAAA  249

seq1  CTGGAAAAAGACAACTTGTT-AAGTGGCAGGCACTAAGAAAGCTGGATGC  278
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGGAAAAAGACAACTTGTTAAAGTGGCAGGCACTAAGAAAGCTGGATGC  299

seq1  CCACGTGTAGAGAGACTACATCTCTGCCTCATCTTGCACAAAAACAAGCC  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGTAGAGAGACTACATCTCTGCCTCATCTTGCACAAAAACAAGCC  349

seq1  CC-AAATGGATGAAAGGGCTTATGGTAACACGTGAAAGTTCCCAAGCATT  377
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGGATGAAAGGGCTTATGGTAACACGTGAAAGTTCCCAAGCATT  399

seq1  CAAGGAAAACATTAAGGAACACTTCAGGATCTGGGCGTAAGTGATGACCT  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAACATTAAGGAACACTTCAGGATCTGGGCGTAAGTGATGACCT  449

seq1  TCTGCCTTCTAATAGCGTAGAAAACAGCAGGAATTGGCAAGGGGGATCAT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCTAATAGCGTAGAAAACAGCAGGAATTGGCAAGGGGGATCAT  499

seq1  GCTTTAAAAATAAAAACCACACAAGAAACAATTGCCAGAATGAAAAGGCA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAAATAAAAACCACACAAGAAACAATTGCCAGAATGAAAAGGCA  549

seq1  GCCTAGCAGGGCAACATAGCACATGCCGGTAACTCTAGAACTTGGGAGGT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCAGGGCAACATAGCACATGCCGGTAACTCTAGAACTTGGGAGGT  599

seq1  GGAAGCAGGAGGAATGTGAGACTCAATCACGTTTGAGTTGTGTGAGCGCC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGGAGGAATGTGAGACTCAATCACGTTTGAGTTGTGTGAGCGCC  649

seq1  TGCACAAGAAAGAAAGAGAGGGGGTGAGGGAGAAGAATGGAAAAGAGAGA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAGAAAGAAAGAGAGGGGGTGAGGGAGAAGAATGGAAAAGAGAGA  699

seq1  AACAGGAAAGAAAGATGGGCATAAGGAAGTCTTCTGAACAACAGAAAATC  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAAGAAAGATGGGCATAAGGAAGTCTTCTGAACAACAGAAAATC  749

seq1  TTTGACGAAGGATTAAGACCCAGAATACATAAGAAATCCAAAAAGTTAAA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACGAAGGATTAAGACCCAGAATACATAAGAAATCCAAAAAGTTAAA  799

seq1  TGGACAAATAATCTGCCCAGCAAGTGGGCAATGAATCGCACAATTCTCAA  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAATAATCTGCCCAGCAAGTGGGCAATGAATCGCACAATTCTCAA  849

seq1  AAGGACAAATGGCAAGAACATGCCAACAGTTTTAGCCAGCAGTGTATCAA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAAATGGCAAGAACATGCCAACAGTTTTAGCCAGCAGTGTATCAA  899

seq1  AACTGCCCTCTGATACTAAGCCACATGGGTCAAATTTACAATTATCACAG  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCCTCTGATACTAAGCCACATGGGTCAAATTTACAATTATCACAG  949

seq1  AAGAGGAGAAAGAGAAAGGGGGAGGAGCAAATCCCTCAAACAACAGCCAG  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGAAAGAGAAAGGGGGAGGAGCAAATCCCTCAAACAACAGCCAG  999

seq1  GTGGAGTGATACAAAATCCTAGCACGGGTGATAGAGAGGCAGGATCAGGG  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTGATACAAAATCCTAGCACGGGTGATAGAGAGGCAGGATCAGGG  1049

seq1  TTCAAGGTCATCCTCGGCTCTAAGAGT  1054
      |||||||||||||||||||||||||||
seq2  TTCAAGGTCATCCTCGGCTCTAAGAGT  1076

seq1: chr2_154627354_154628177
seq2: B6Ng01-189F19.g_69_897

seq1  GAATTCAATGCTCTGTGGGCACCAGGCACAAAAGTGATATAGATTGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCTCTGTGGGCACCAGGCACAAAAGTGATATAGATTGAAAA  50

seq1  ACCAAAAAAAAAAAAAAAAAAAGTGGTATAGAAACAAACATGCAGGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAAAAAAAAAAAAAAAGTGGTATAGAAACAAACATGCAGGGGCT  100

seq1  GGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCC  150

seq1  CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGA  200

seq1  GATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTAC  250

seq1  ATATAATAAATAAATAAATAAATAAATCTTTAAAAAAAAAAAAAGAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAAATAAATAAATAAATAAATCTTTAAAAAAAAAAAAAGAAACA  300

seq1  GAAACAAACATGCAGGTAAAATACTCATACACATAAAATACGATAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACATGCAGGTAAAATACTCATACACATAAAATACGATAATAAA  350

seq1  ATAATTAAAAAATAAATCTTTAAAAATACTTTTTAAAAAATATTAAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAAAAATAAATCTTTAAAAATACTTTTTAAAAAATATTAAGAAG  400

seq1  GTTGAAGCATGTTTTTAAGGTTAGAGATAATGTTGAAGGCAGTGAATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGCATGTTTTTAAGGTTAGAGATAATGTTGAAGGCAGTGAATTGG  450

seq1  AGACCACCAAGGCATTTTCTGGTTCTAAGTGACCTATAAATGTCTTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACCAAGGCATTTTCTGGTTCTAAGTGACCTATAAATGTCTTTGTC  500

seq1  TTTGGAGGAGATAAAAATGCTGAGAATGAGGTAGTTTCCTATCTTTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGAGATAAAAATGCTGAGAATGAGGTAGTTTCCTATCTTTGACA  550

seq1  ACTAAACTTGGGACAAGAAGGTTTACTCTATTTATATGGCACTAATAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACTTGGGACAAGAAGGTTTACTCTATTTATATGGCACTAATAAAC  600

seq1  TGGAGAAATAATTTTTCTCACTGAAATTCCATTTTCTCATAAGGTGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAATAATTTTTCTCACTGAAATTCCATTTTCTCATAAGGTGGGTG  650

seq1  TTAATATTCTATAGCTGTTTCCCTTACTGTGTAAGGAAAATGAGGGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTCTATAGCTGTTTCCCTTACTGTGTAAGGAAAATGAGGGGGTG  700

seq1  CTGGAGAGATGGCTTAGAGGTTAAGAGCACTCACTGAC-TGCTCTTCTTC  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGGAGAGATGGCTTAGAGGTTAAGAGCACTCACTGACTTGCTCTTCTTC  750

seq1  CAGAGGTCC-TGAGTTCAATTCCCAGCAACCACGT--GGTAGCTTACAAC  796
      ||||||||| |||||||||||||||||||||||||  | |||| ||||||
seq2  CAGAGGTCCTTGAGTTCAATTCCCAGCAACCACGTTGGTTAGC-TACAAC  799

seq1  CATCT-GCAATGGGG-CCTGATGTCCTCTT  824
      ||||| | ||||||| ||||||||||||||
seq2  CATCTGGAAATGGGGCCCTGATGTCCTCTT  829