BAC Information

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BAC

Clone NameB6Ng01-189H05
Chromosome2 (Build37)
Map Location 114,499,746 - 114,620,813
singlet/doubletdoublet
Overlap geneLOC100043219
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4
Downstream geneLOC100043222, LOC100043232, LOC100043236, BC052040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189H05.bB6Ng01-189H05.g
ACCGA013469GA013470
length7821,132
definitionB6Ng01-189H05.b B6Ng01-189H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,620,212 - 114,620,813)(114,499,746 - 114,500,802)
sequence
gaattcttctgtggaacacttctaagatttccagcatgctttgctagaag
ctcctctatgccctggttacacagatataaaaaccccatcctgcctttcc
cataggatactaaaaatttagtgaagaggctaggaaaatagacctattta
attattagttatattagccatgttgagttggctgtgtcagcactgaacac
tcaattataatctagttgataaaatttaatcctgtaagtgattttactca
aatgtctgttctcttttctatgtgattaaattcagttttaaagactgtaa
tcaggaggctagggagatgatacactgggtaaaacgtttgttgcacaagt
actggggatgtgatttcagacccccagcactcacacagaagcatacattt
agaacacatacatttataactatagtgtagaaggagtgggggaagttaga
ggtggatccagggagcttgcttgccaggaggtctatccaaagtgttgagc
acaggtaagagactctgtcacaaaaaacaagctagagatgggtagaagac
acccaatctctctctctctctctctctctctctctctctctctctctctc
tcatgtatttgaagacagcatgtaaccaaaaaaaaagcatagaaaataga
aacagagcaaagtttcagccctacaaagtaattatgtttatatctttcaa
acgactatgtttgtaccttatatcataataagagtagtgatatggtaaat
tgatatgtatggcagaatttactattgaatga
gaattcttttaaccttagtagtctgtcacctttctattcttacatgaaaa
tagttactaaagactgctgtctgctgtaccagaaaaccacaagagctgtg
cccaactacccgtaaagaagaggctgtgtaaagctataaggaactgtgct
tttgctttgtgtttagtttctgttttaaggaagcagaggttggaactaat
gatccaggattcatagaatttatgtaagtttaaggatttctaaaaaatat
tgttaataatgatcaaaaccttgatgatgtaattttagtaaataaaagac
tgggttcaggctttctgatcaggagaaggcaaaagatttatgagagaaga
gaatgcaaaggaatgaaaggggagaaggaagaaaggagaagaaataggaa
agatgagaatccttgggaacagagagcatacctgaactgacagcttgcat
caactactgaccccaagtcattattgaattagcaccactcccattcctgc
ctttctaggaccctctccatgataaggctggaccttagcatgtgtacatc
acacacacacacacacacacacacacacacaccttattgtgttgacatag
ttgccacaatccaaatggggtgtgagtagattagagtgaaacttgtttga
ataacatggaagagattttgagttatatgaaaaaaacttcattaatgcta
aaacaggcattgtatgctttgtctaagaccttaaggggaaaactatttaa
actatctctgtggaaaagtgataaatttaaatcagtaagttctcctagga
ggggaagaaataagaatttcacttaaattatgacagtatgaatctaacag
tatgctggacttatttttcatgggattattaaatttgctgaagcaaatta
caaataataaattgactaagaagtgtaacaaaagtgtgtttttatcatca
tttactataagcagtttattctatgacatgcaccgatgaaagaaatctaa
cctatgggatttttggatggttaatattggcggaaactaactgagaattc
aagcattagagtttgctctaaaatactaacatgtccataatgttcaaaac
gtaatgtcaagtaatggaaactaaccgtactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114620212_114620813
seq2: B6Ng01-189H05.b_40_641 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGG  50

seq1  GTGTCTTCTACCCATCTCTAGCTTGTTTTTTGTGACAGAGTCTCTTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTCTACCCATCTCTAGCTTGTTTTTTGTGACAGAGTCTCTTACCT  100

seq1  GTGCTCAACACTTTGGATAGACCTCCTGGCAAGCAAGCTCCCTGGATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAACACTTTGGATAGACCTCCTGGCAAGCAAGCTCCCTGGATCCA  150

seq1  CCTCTAACTTCCCCCACTCCTTCTACACTATAGTTATAAATGTATGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAACTTCCCCCACTCCTTCTACACTATAGTTATAAATGTATGTGTT  200

seq1  CTAAATGTATGCTTCTGTGTGAGTGCTGGGGGTCTGAAATCACATCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTATGCTTCTGTGTGAGTGCTGGGGGTCTGAAATCACATCCCCA  250

seq1  GTACTTGTGCAACAAACGTTTTACCCAGTGTATCATCTCCCTAGCCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGTGCAACAAACGTTTTACCCAGTGTATCATCTCCCTAGCCTCCT  300

seq1  GATTACAGTCTTTAAAACTGAATTTAATCACATAGAAAAGAGAACAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGTCTTTAAAACTGAATTTAATCACATAGAAAAGAGAACAGACA  350

seq1  TTTGAGTAAAATCACTTACAGGATTAAATTTTATCAACTAGATTATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTAAAATCACTTACAGGATTAAATTTTATCAACTAGATTATAATT  400

seq1  GAGTGTTCAGTGCTGACACAGCCAACTCAACATGGCTAATATAACTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTCAGTGCTGACACAGCCAACTCAACATGGCTAATATAACTAATA  450

seq1  ATTAAATAGGTCTATTTTCCTAGCCTCTTCACTAAATTTTTAGTATCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAGGTCTATTTTCCTAGCCTCTTCACTAAATTTTTAGTATCCTA  500

seq1  TGGGAAAGGCAGGATGGGGTTTTTATATCTGTGTAACCAGGGCATAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGGCAGGATGGGGTTTTTATATCTGTGTAACCAGGGCATAGAGG  550

seq1  AGCTTCTAGCAAAGCATGCTGGAAATCTTAGAAGTGTTCCACAGAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTAGCAAAGCATGCTGGAAATCTTAGAAGTGTTCCACAGAAGAAT  600

seq1  TC  602
      ||
seq2  TC  602

seq1: chr2_114499746_114500802
seq2: B6Ng01-189H05.g_149_1195

seq1  ACCACAAGAGCTGTGCCCAACTACCCGTAAAGAAGAGGCTGTGTAAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAGAGCTGTGCCCAACTACCCGTAAAGAAGAGGCTGTGTAAAGCT  50

seq1  ATAAGGAACTGTGCTTTTGCTTTGTGTTTAGTTTCTGTTTTAAGGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAACTGTGCTTTTGCTTTGTGTTTAGTTTCTGTTTTAAGGAAGCA  100

seq1  GAGGTTGGAACTAATGATCCAGGATTCATAGAATTTATGTAAGTTTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGGAACTAATGATCCAGGATTCATAGAATTTATGTAAGTTTAAGG  150

seq1  ATTTCTAAAAAATATTGTTAATAATGATCAAAACCTTGATGATGTAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAAAAAATATTGTTAATAATGATCAAAACCTTGATGATGTAATTT  200

seq1  TAGTAAATAAAAGACTGGGTTCAGGCTTTCTGATCAGGAGAAGGCAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATAAAAGACTGGGTTCAGGCTTTCTGATCAGGAGAAGGCAAAAG  250

seq1  ATTTATGAGAGAAGAGAATGCAAAGGAATGAAAGGGGAGAAGGAAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAGAGAAGAGAATGCAAAGGAATGAAAGGGGAGAAGGAAGAAAG  300

seq1  GAGAAGAAATAGGAAAGATGAGAATCCTTGGGAACAGAGAGCATACCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAATAGGAAAGATGAGAATCCTTGGGAACAGAGAGCATACCTGA  350

seq1  ACTGACAGCTTGCATCAACTACTGACCCCAAGTCATTATTGAATTAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGCTTGCATCAACTACTGACCCCAAGTCATTATTGAATTAGCAC  400

seq1  CACTCCCATTCCTGCCTTTCTAGGACCCTCTCCATGATAAGGCTGGACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCATTCCTGCCTTTCTAGGACCCTCTCCATGATAAGGCTGGACCT  450

seq1  TAGCATGTGTACATCACACACACACACACACACACACACACACACACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGTGTACATCACACACACACACACACACACACACACACACACCTT  500

seq1  ATTGTGTTGACATAGTTGCCACAATCCAAATGGGGTGTGAGTAGATTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTGACATAGTTGCCACAATCCAAATGGGGTGTGAGTAGATTAGA  550

seq1  GTGAAACTTGTTTGAATAACATGGAAGAGATTTTGAGTTATATGAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTTGTTTGAATAACATGGAAGAGATTTTGAGTTATATGAAAAAA  600

seq1  ACTTCATTAATGCTAAAACAGGCATTGTATGCTTTGTCTAAGACCTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTAATGCTAAAACAGGCATTGTATGCTTTGTCTAAGACCTTAAG  650

seq1  GGGAAAACTATTTAAACTATCTCTGTGGAAAAGTGATAAATTTAAATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACTATTTAAACTATCTCTGTGGAAAAGTGATAAATTTAAATCAG  700

seq1  TAAGTTCTCCTAGGAGGGGAAGAAATAAGAATTTCACTTAAATTATGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTCCTAGGAGGGGAAGAAATAAGAATTTCACTTAAATTATGACA  750

seq1  GTATGAATCTAACAGTATGCTGGACTTATTTTTCATGGGATTATTAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATCTAACAGTATGCTGGACTTATTTTTCATGGGATTATTAAATT  800

seq1  TGCTGAAGCAAAATTACAAAATAATAAATTGACTAAGAAGTGTAACAAAA  850
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  TGCTGAAGC-AAATTAC-AAATAATAAATTGACTAAGAAGTGTAACAAAA  848

seq1  GTGTGTTTTATATCA----TTACTATAAGCAAGTTTATTCTAATTACATG  896
      ||||||||| |||||    ||||||||||| |||||||||| || |||||
seq2  GTGTGTTTT-TATCATCATTTACTATAAGC-AGTTTATTCT-ATGACATG  895

seq1  CACC-ATGAAAGAAAT-TAACCTAT-GAATTTTTGGATTGGGTTAATAAT  943
      |||| ||||||||||| |||||||| | ||||||||||  ||||||| ||
seq2  CACCGATGAAAGAAATCTAACCTATGGGATTTTTGGAT--GGTTAAT-AT  942

seq1  TGGGGGAAACTAAACTGAGATTTAAAAGCATTTAAGAGTTTTGCTCATAA  993
      ||| ||||||| |||||||| ||  |||||||  |||| ||||||| |||
seq2  TGGCGGAAACT-AACTGAGAATT-CAAGCATT--AGAG-TTTGCTC-TAA  986

seq1  AATACTTAAACAT-TCTATAATTTTAAAAAC-TAATGTACAGTAAATGAG  1041
      ||||||  ||||| || ||||| || ||||| ||||||  ||| |||| |
seq2  AATACT--AACATGTCCATAATGTTCAAAACGTAATGTCAAGT-AATG-G  1032

seq1  AAACTACACCGTACTG  1057
      |||||| |||||||||
seq2  AAACTA-ACCGTACTG  1047