BAC Information

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BAC

Clone NameB6Ng01-189L03
Chromosome2 (Build37)
Map Location 80,310,427 - 80,311,542
singlet/doubletsinglet
Overlap genenone
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb
Downstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189L03.bB6Ng01-189L03.g
ACCGA013648GA013649
length1,130964
definitionB6Ng01-189L03.b B6Ng01-189L03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattctcagcaaccacatggtggctcacaaccatctgtaataag
atctgatgccctcttctggtgtgtctgaagacatctacagtgtactcaca
taaataaaataaataaataaatcttaaaaaaaaaagagaatttgttttga
aaatataaattgaagaaaaggtgagctatgtaacaaaataaaccatggca
ctcttaactaaaataattgttctctgctggtgtagctaaaggaggtgtca
gctatatgaccagagtaaagaaacataattgggaagtcagttgactatat
gtctatttttgttcttcactcagcctaatcttagtttgttacttcagcca
aataatgaggctctgcaatatggtttattggtagcttaagggcccctgtt
tctcctcttcttaacactgagaatgctgttaagagcatatctgtgtggta
ctttgagttgttcagagcctataaaactttaaaaatgtttggtatgcggc
agggaagcaggctctgtcaaatcctgttgggaaaaaagaagtggattgtc
tgcagaacaaagggccatggaaggacagaagtcttccaactgtaacctag
aattttgtttctgtaaatgtaaaccactgaggaatcagagtatggtgtag
actaaagaaaagtagaagaaatggcatagggagatgttcacaataagtta
aaaaatttaaagttagcaaacagggaaggagagtagttagtgtgagggca
tttatctaccatgagcaaggccttgtatcccattgcctttatctccataa
agtgcacacatgtaagtattacctaacagtggctgtttcatgatgctatg
aaagtgtatcatcataattacagagatagatgatagagtatattaggata
gttgcatatttgtgatgtaagtgtagatacatctaaagaaatgcataata
gttgtaaaatatgtatatatattattatatacttatagatacatatgaac
tttaaagggcttaatgtagagttaaccataatagtgtctttacatataga
atattaaaatgtctaacaaaaaaactttctgaggaattgaaatttcaggg
gtgaatttgagaatttgtgggtctctttgg
gaattccttttcctctcttaactcctttcatgtaattcccaccgcttctc
cagttcataacttcttctatagttattgttttacacacacacacacacac
acaaaacctattgactcctcttatgtccatattttaaagttgaccacttc
atattgggaacctattaaagggatcttgtccctggtgaaaactgactctg
attctacctcagcagcaattgacttcctggagctttctgtctaggatggg
tccttgtgaaaattgtccccatccatgttggcaaattaagtagtatactc
atgttcaggtaaccatgctgtagagttcatgagtagagcatccctgttat
atgtagaagacattatcttgtggcaggcatcttggtactctgcctcttaa
gtctctgttacactcctccatcgttggtattccctgattagttgtaggga
ctgtattacagatgtatcagttggggttaggcaccacacagccacttact
tactctctaaatcttgaccagttgtgattctctgtaatagtctccatctg
ctgcaaaaaaaagaagcttccctgatgagtagcagcaagaactacattta
tctttgggtataagtaggagttttcagaatgcagttagaaatcatactgg
tttaagaaaactgaagcagtaggttcttctctagggtctatgaaatctcc
agccatggctagtaagctaggtttctagtaccaggcatggcttccattct
attgagtgaaccttaagtccagttagagagttgttagttaccctgaggac
acaagtgccactatcgaacctgtgggatatctgtagcaggaatttccctg
tccaattacactaaaatattagtgcagcaagaggcctgtgattggacagg
gaaaagggaggcagatctaagagttgcagaagagagccatgagagagaga
gagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80310427_80311542
seq2: B6Ng01-189L03.b_44_1173

seq1  GAATTCAATTCTCAGCAACCACATGGTGGCTCACAACCATCTGTAATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCTCAGCAACCACATGGTGGCTCACAACCATCTGTAATAAG  50

seq1  ATCTGATGCCCTCTTCTGGTGTGTCTGAAGACATCTACAGTGTACTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGCCCTCTTCTGGTGTGTCTGAAGACATCTACAGTGTACTCACA  100

seq1  TAAATAAAATAAATAAATAAATCTTAAAAAAAAAAGAGAATTTGTTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATAAATAAATAAATCTTAAAAAAAAAAGAGAATTTGTTTTGA  150

seq1  AAATATAAATTGAAGAAAAGGTGAGCTATGTAACAAAATAAACCATGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAATTGAAGAAAAGGTGAGCTATGTAACAAAATAAACCATGGCA  200

seq1  CTCTTAACTAAAATAATTGTTCTCTGCTGGTGTAGCTAAAGGAGGTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACTAAAATAATTGTTCTCTGCTGGTGTAGCTAAAGGAGGTGTCA  250

seq1  GCTATATGACCAGAGTAAAGAAACATAATTGGGAAGTCAGTTGACTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATGACCAGAGTAAAGAAACATAATTGGGAAGTCAGTTGACTATAT  300

seq1  GTCTATTTTTGTTCTTCACTCAGCCTAATCTTAGTTTGTTACTTCAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTTTTGTTCTTCACTCAGCCTAATCTTAGTTTGTTACTTCAGCCA  350

seq1  AATAATGAGGCTCTGCAATATGGTTTATTGGTAGCTTAAGGGCCCCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGAGGCTCTGCAATATGGTTTATTGGTAGCTTAAGGGCCCCTGTT  400

seq1  TCTCCTCTTCTTAACACTGAGAATGCTGTTAAGAGCATATCTGTGTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTTCTTAACACTGAGAATGCTGTTAAGAGCATATCTGTGTGGTA  450

seq1  CTTTGAGTTGTTCAGAGCCTATAAAACTTTAAAAATGTTTGGTATGCGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGTTGTTCAGAGCCTATAAAACTTTAAAAATGTTTGGTATGCGGC  500

seq1  AGGGAAGCAGGCTCTGTCAAATCCTGTTGGGAAAAAAGAAGTGGATTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCAGGCTCTGTCAAATCCTGTTGGGAAAAAAGAAGTGGATTGTC  550

seq1  TGCAGAACAAAGGGCCATGGAAGGACAGAAGTCTTCCAACTGTAACCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACAAAGGGCCATGGAAGGACAGAAGTCTTCCAACTGTAACCTAG  600

seq1  AATTTTGTTTCTGTAAATGTAAACCACTGAGGAATCAGAGTATGGTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTTCTGTAAATGTAAACCACTGAGGAATCAGAGTATGGTGTAG  650

seq1  ACTAAAGAAAAGTAGAAGAAATGGCATAGGGAGATGTTCACAATAAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAAAAGTAGAAGAAATGGCATAGGGAGATGTTCACAATAAGTTA  700

seq1  AAAAATTTAAAGTTAGCAAACAGGGAAGGAGAGTAGTTAGTGTGAGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAAAGTTAGCAAACAGGGAAGGAGAGTAGTTAGTGTGAGGGCA  750

seq1  TTTATCTACCATGAGCAAGGCCTTGTATCCCATTGCCTTTATCTCCATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTACCATGAGCAAGGCCTTGTATCCCATTGCCTTTATCTCCATAA  800

seq1  AGTGCACACATGTAAGTATTACCTAACAGTGGCTGTTTCATGATGCTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACACATGTAAGTATTACCTAACAGTGGCTGTTTCATGATGCTATG  850

seq1  AAAGTGTATCATCATAATTACAGAGATAGATGATAGAGTATATTAGGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTATCATCATAATTACAGAGATAGATGATAGAGTATATTAGGATA  900

seq1  GTTGCATATTTGTGATGTAAGTGTAGATACATCTAAAGAAATGCAT-ATA  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTGCATATTTGTGATGTAAGTGTAGATACATCTAAAGAAATGCATAATA  950

seq1  GTTGTAAAATATGTATATATATTA-TATATACTTATAGATACATATGAAC  998
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTGTAAAATATGTATATATATTATTATATACTTATAGATACATATGAAC  1000

seq1  TTTAAA-GGCTTAATGTAGAGTTAACCAT-ATAGTGTCTTTACATATAG-  1045
      |||||| |||||||||||||||||||||| ||||||||||||||||||| 
seq2  TTTAAAGGGCTTAATGTAGAGTTAACCATAATAGTGTCTTTACATATAGA  1050

seq1  ATATTAAAATGTCTAAC--AAAAACTTTCTGAGGAA-TGAAA-TTCA-GG  1090
      |||||||||||||||||  ||||||||||||||||| ||||| |||| ||
seq2  ATATTAAAATGTCTAACAAAAAAACTTTCTGAGGAATTGAAATTTCAGGG  1100

seq1  GTGATTTTGAG-ATTTGTG---TTCTTTGG  1116
      |||| |||||| |||||||    |||||||
seq2  GTGAATTTGAGAATTTGTGGGTCTCTTTGG  1130