BAC Information

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BAC

Clone NameB6Ng01-189P15
Chromosome18 (Build37)2 (Build37)
Map Location 45,552,460 - 45,553,00458,670,552 - 58,670,884
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
Downstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189P15.bB6Ng01-189P15.g
ACCGA013855GA013856
length867333
definitionB6Ng01-189P15.b B6Ng01-189P15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,552,460 - 45,553,004)(58,670,552 - 58,670,884)
sequence
gaattctcccactattattgtgtgaggtgcaatgtgtgctttgagcttta
ttaaagtttctttaatgaatgtggctgcccttgtatttggcgcatagata
ttcagaattgagagttcctcttggaggattttacctttgatgagaacaaa
gtgcccctccttgtcttttttgatgactttgggttggaagtcaatcttat
cagatattaggatggctactccagcttgtttcttcagtccatttgcttgg
aaaattgttttccagccttttattctgaggtagtgtctatctttttctct
gagatgtgtctcctgtaaacagcaaaatgttgggtcttgtttgtgtagcc
agtttgttagtctatgtctttttattggggagttgagaccattgatgtta
agagatattaaggaaaagtaattgttgcttcctgttatttttgttgttaa
agttggcattctgttcttgtggctgtcttcttttaggtttgttgagggat
taccttcttgttttttctagggcattgttcccgttcttgtattggttttt
ttctgttattaccctttgaagggctggattcgtggagagataatgtgaga
atttggttttgtcgtggaatactttggtttctccatctatggtaattgag
agtttggctgggtatagtagcctgggctggaatttgtgttcttttagtgt
ctgtataacatctgtccaggctcttctggcttttcatagtctctggtgaa
aaatctggtgtaattctgataggcttgcctttgtatgttacttgaccttt
tttcccttaccgcttttagtattctatcttattagtgcattttgtttgtt
ctgattattatgtgtcc

catgcttgttaatgatgggcctaaacctctgtcccactgacttggtagca
gcttttggtccaggtagcagcagcccaccttggaacaagttcttctcctg
gtttatgttactctacctgttttccttcctgctatgttggctgtgtctca
gtttccttggccgtctctcccccagctctatacacaggagtattctggga
ttgtagcctttaggctgattgcactttactgtggtcacccatggggacat
ccttaagctttataggtttatttttcattggtttaggggcatcttttggg
gtttttttgtttgtttggttggttgggtttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45552460_45553004
seq2: B6Ng01-189P15.b_369_915 (reverse)

seq1  GACACATAATAATCAGAACAA--CAAATGCACTAAATAAAGATAGAATAC  48
      |||||||||||||||||||||   |||||||||||   ||||||||||||
seq2  GACACATAATAATCAGAACAAACAAAATGCACTAA--TAAGATAGAATAC  48

seq1  TAAAAGCAGTAAGGG-AAAAAGGTCAAGTAACATACAAAGGCAAGCCTAT  97
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  TAAAAGCGGTAAGGGAAAAAAGGTCAAGTAACATACAAAGGCAAGCCTAT  98

seq1  CAGAATTACACCAGATTTTTCACCAGAGACTATG-AAAGCCAGAAGAGCC  146
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGAATTACACCAGATTTTTCACCAGAGACTATGAAAAGCCAGAAGAGCC  148

seq1  TGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCT  196
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGACAGATGTTATACAGACACTAAAAGAACACAAATTCCAGCCCAGGCT  198

seq1  ACTATACCCAGCCAAATTCTCAATTACCATAGATGGAGAAACCAAAGTAT  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTAT  248

seq1  TCCACGACAAAACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTT  296
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCACGACAAAACCAAATTCTCACATTATCTCTCCACGAATCCAGCCCTT  298

seq1  CAAAGGTTAATAACAGAAAAAAACCAATACAAGAACGGGAACAATGCCCT  346
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGTAATAACAGAAAAAAACCAATACAAGAACGGGAACAATGCCCT  348

seq1  AGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCAC  398

seq1  AAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTA  448

seq1  CTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAA  498

seq1  GACATAGACTAACAAACTGGCTACACAAACAAGACCTAACATTTTGCTG  545
      |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTG  547


seq1: chr2_58670552_58670884
seq2: B6Ng01-189P15.g_73_405 (reverse)

seq1  AAAAAACCCAACCAACCAAACAAACAAAAAAACCCCAAAAGATGCCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCAACCAACCAAACAAACAAAAAAACCCCAAAAGATGCCCCTA  50

seq1  AACCAATGAAAAATAAACCTATAAAGCTTAAGGATGTCCCCATGGGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGAAAAATAAACCTATAAAGCTTAAGGATGTCCCCATGGGTGAC  100

seq1  CACAGTAAAGTGCAATCAGCCTAAAGGCTACAATCCCAGAATACTCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAAGTGCAATCAGCCTAAAGGCTACAATCCCAGAATACTCCTGT  150

seq1  GTATAGAGCTGGGGGAGAGACGGCCAAGGAAACTGAGACACAGCCAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAGCTGGGGGAGAGACGGCCAAGGAAACTGAGACACAGCCAACAT  200

seq1  AGCAGGAAGGAAAACAGGTAGAGTAACATAAACCAGGAGAAGAACTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAGGAAAACAGGTAGAGTAACATAAACCAGGAGAAGAACTTGTT  250

seq1  CCAAGGTGGGCTGCTGCTACCTGGACCAAAAGCTGCTACCAAGTCAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTGGGCTGCTGCTACCTGGACCAAAAGCTGCTACCAAGTCAGTGG  300

seq1  GACAGAGGTTTAGGCCCATCATTAACAAGCATG  333
      |||||||||||||||||||||||||||||||||
seq2  GACAGAGGTTTAGGCCCATCATTAACAAGCATG  333


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