BAC Information

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BAC

Clone NameB6Ng01-190G03
Chromosome2 (Build37)
Map Location 154,215,492 - 154,216,650
singlet/doubletsinglet
Overlap geneSnta1
Upstream geneAsxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1
Downstream geneCbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190G03.bB6Ng01-190G03.g
ACCGA014150GA014151
length5771,151
definitionB6Ng01-190G03.b B6Ng01-190G03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
caacgcaacatgaaaggactcgactgaccctttaaactggaagccccacc
actgggatggcctgcacgcatcacccctggcttcaaactgcccattctga
aaaatttcaagacaaaagctataacaacctagatactaagcccttgggac
ccagcattgaagtggtctctgcacccctgccttcctgcaaggtctaccac
cttctgtcccagactgatttcagtgactccaactggaggctccaccaata
aagttggctcaggaaaacattctgatctgcctgtacttggtgagatgata
gctaggtgtaaatagatggatgggtggatggatggacggctgctggagaa
atagatatagacagaaatcatctcagccacatcttggctttcctacaagt
cttgaaaagtcaccattggggttggagaatcatcaagagctgcatatcta
tggttatagacttaagaagtttagaagagtattgttctgtaaggagtata
gagatcaaccattgcatcagtatgaagatgaactatagcagggaggttgg
acagacacatgaggaagaggaggggga
gaattcatggtctgatttctaccggggaagagaacccccactctggacag
acaaatgacagcttgccccgagccaacagatttcctaggttccaggccag
gacattcagtcaaagacatttactgagccatgtcatggattctggaaatt
tctgcattgagaccaaaaaacatgactcctttcagcaaggcccatgatac
cccgtgctcctctgttaaactgaacaagggtatgggcttgctccgtggtg
gaatctagtggaatgcctcatgtggaatctcctcctgcttcatggaacag
ggcttgcctgcctcgggctttcctctggcttccttcatgagactcaactt
cctgcgtgagctgtcccatgctgctggactagagacttggatggggagag
cgtggactctggctgggcctatccttgtagattccaaactcttggccgct
ggccatggtcatgccctccttcctggaggccacagtctgtaggcaatccc
accctatctgctcctttgagtcaagctcaagtgggggaggggcgactttg
aactaggctatatgaacccaaactctatgggccccaggtctccaccctca
ttcagtggagcggtcacttggcgtgtaaaatcgaagtcccgtttctggca
ccagatttctggagcgctcctcaagtgtgggacattcctgtgatgatggg
agagagatgacctggttcaagggcagccgggtgagcagtggctcaaggag
tttctttgacttcagagttgacaaatgttctttggctgaacatggagtat
atgagaagtctgctgggctctgaggacatacaagagtctcatgaagttcc
tgaccctactgcagtgtctccctaggtggggacactgaccccaggggact
ggacttgggatcccaggacccatgtaaagcagctcacacccacctgtaca
tcagctccagggcatccaacactctgggctccaggcacattagacagtgc
aagagacagccatttttctgcatgtcttctatctttttgctttgcatttt
gtgactgaaagaatgatgattcgagctatggtcagcattctggagcgtgg
aagggattagcctacagatagacccaggtttcagctacaatcccctgaac
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154215492_154216650
seq2: B6Ng01-190G03.g_64_1214 (reverse)

seq1  AGTTCAGGGGATTTGGGTAACACTAGAACCTGGGTCTTACTCTTAGCTTC  50
      |||||||||||||   |||   ||  |||||||||||  || |  |||  
seq2  AGTTCAGGGGATT---GTA--GCTGAAACCTGGGTCTATCTGTAGGCTAA  45

seq1  TCCCTCACAGCCTCAGGATGGCTG-CCATAGCTCAAATCAATCATTCCTT  99
      |||||  ||  |||  ||  |||| ||||||||| |||| ||||||| ||
seq2  TCCCTTCCACGCTCCAGAATGCTGACCATAGCTCGAATC-ATCATTCTTT  94

seq1  CTGTCACAAAATACAAAGCAAAAAGATAGAAGACATGCAGAAAAATGGCT  149
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGTCACAAAATGCAAAGCAAAAAGATAGAAGACATGCAGAAAAATGGCT  144

seq1  GTCTCCTTGCACCTGTCTAATGTGCCTGGAGCCCAGAGGTGTTGGATCCC  199
      |||| |||||| ||||||||||||||||||||||||| ||||||||| ||
seq2  GTCT-CTTGCA-CTGTCTAATGTGCCTGGAGCCCAGA-GTGTTGGATGCC  191

seq1  CTGGAGCTGATGTTACAGGTGGGTGTGAGCTGCTTTACATGGGTCCTGGG  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTGATG-TACAGGTGGGTGTGAGCTGCTTTACATGGGTCCTGGG  240

seq1  AACCCAAGTCCAGTCCCCTGGGGTCAGTGTCCCCACCTAGGGAGAACACT  299
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCCCAAGTCCAGTCCCCTGGGGTCAGTGTCCCCACCTAGGGAG-ACACT  289

seq1  GCAGTAAGGTCAGGAACTTCATGAGACTCTTCTATGTCCTCAGAGCCCAG  349
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  GCAGTAGGGTCAGGAACTTCATGAGACTCTTGTATGTCCTCAGAGCCCAG  339

seq1  CAGACTTCTCATATACTCCATGTTCAGCCAAAGAACATTTGTCAACTCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCTCATATACTCCATGTTCAGCCAAAGAACATTTGTCAACTCTG  389

seq1  AAGTCAAAGAAACTCCCTGAGCCACTGCTCACCCGGCTGCCCCTGAACCA  449
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  AAGTCAAAGAAACTCCTTGAGCCACTGCTCACCCGGCTGCCCTTGAACCA  439

seq1  GGTCATCTCTCTCCCTTC-CCACAGGAATGTCCTATAAATGAGGAGCGCT  498
      ||||||||||||||| ||  ||||||||||||| | |  |||||||||||
seq2  GGTCATCTCTCTCCCATCATCACAGGAATGTCCCACACTTGAGGAGCGCT  489

seq1  CCAGCTAACTGGTGCCAGAAACAGGGCTTGGATTTCACACACCAAGTGAC  548
      ||||  | |||||||||||||| || ||| ||||| |||| |||||||||
seq2  CCAGAAATCTGGTGCCAGAAACGGGACTTCGATTTTACACGCCAAGTGAC  539

seq1  CGCTCC-CTGAGTGAGGGTGGAGACCTGGGGCCCCTAGAGTTTGGCCATA  597
      |||||| |||| |||||||||||||||||||||| ||||||||||    |
seq2  CGCTCCACTGAATGAGGGTGGAGACCTGGGGCCCATAGAGTTTGGGTTCA  589

seq1  AATAGCCTAGTTCAAAGCCGCCCCACCCCCATTTCTGCTTGACTCACTGG  647
       |||||||||||||||| |||||| |||||| ||  ||||||||||  ||
seq2  TATAGCCTAGTTCAAAGTCGCCCCTCCCCCACTTGAGCTTGACTCAAAGG  639

seq1  AGCAGATAGGGTGGGACTGCCTACAGACTCTGGCCTCCAGGACTGAGGGC  697
      |||||||||||||||| |||||||||||| ||||||||||||  ||||||
seq2  AGCAGATAGGGTGGGATTGCCTACAGACTGTGGCCTCCAGGAAGGAGGGC  689

seq1  ATGACCATGGCCAGCGGCCAAGAGTTTGGAATCTACAAGGATAGGCCCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCATGGCCAGCGGCCAAGAGTTTGGAATCTACAAGGATAGGCCCAG  739

seq1  CCAGAGTCCACGCTCTCCCCAGCCAAGTCTCTAGTCCAGCAGCCTGGTAC  797
      ||||||||||||||||||||| ||||||||||||||||||||| ||| ||
seq2  CCAGAGTCCACGCTCTCCCCATCCAAGTCTCTAGTCCAGCAGCATGGGAC  789

seq1  AGCTCACGCAGGAAGCTGAGGCTAATGAAGGAAGCCAGAGGAAAGCCAGA  847
      ||||||||||||||| |||| || ||||||||||||||||||||||| ||
seq2  AGCTCACGCAGGAAGTTGAGTCTCATGAAGGAAGCCAGAGGAAAGCCCGA  839

seq1  GGCAGGCAAGCCCTGCTCCATGATGCAGGAGGAGATTCCACATGAGGCAT  897
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  GGCAGGCAAGCCCTGTTCCATGAAGCAGGAGGAGATTCCACATGAGGCAT  889

seq1  TCCACTAGATTCCACCACGGAGCAAGGCCATACCCCTGTCCAGTTTAACT  947
      |||||||||||||||||||||||||| |||||||| ||| ||||||||| 
seq2  TCCACTAGATTCCACCACGGAGCAAGCCCATACCCTTGTTCAGTTTAACA  939

seq1  GAGGAGCACGGGGTCTCATGTGCCCTGCTGAAAGGAGTCACGCTGTTTTG  997
      |||||||||||||| ||||| ||| ||||||||||||||| | | ||| |
seq2  GAGGAGCACGGGGTATCATGGGCCTTGCTGAAAGGAGTCATGTTTTTTGG  989

seq1  TCTCAATGCAGAAATTTCCAGAATACATGCCAGGGCTCAGTAAATGTCTG  1047
      |||||||||||||||||||||||| |||| || |||||||||||||||| 
seq2  TCTCAATGCAGAAATTTCCAGAATCCATGACATGGCTCAGTAAATGTCTT  1039

seq1  TGACTGAATGTCCTGGCCTGGAACCTAGGAAATCTGTTGGCTCGGCTCAA  1097
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TGACTGAATGTCCTGGCCTGGAACCTAGGAAATCTGTTGGCTCGGGGCAA  1089

seq1  GCTGTTCTCTGTCTGTCCAGAGTGGGTGTTCTCTTCCCCTGTAGAAATCA  1147
      |||||  | ||||||||||||||||| |||||||||||| ||||||||||
seq2  GCTGTCATTTGTCTGTCCAGAGTGGGGGTTCTCTTCCCCGGTAGAAATCA  1139

seq1  TACCATGAATTC  1159
       |||||||||||
seq2  GACCATGAATTC  1151