BAC Information

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BAC

Clone NameB6Ng01-190G11
Chromosome2 (Build37)
Map Location 77,006,974 - 77,168,760
singlet/doubletdoublet
Overlap gene2610301F02Rik, Sestd1, LOC623706
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
Downstream geneLOC667906, Zfp533, BC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190G11.bB6Ng01-190G11.g
ACCGA014166GA014167
length1,1301,150
definitionB6Ng01-190G11.b B6Ng01-190G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,167,627 - 77,168,760)(77,006,974 - 77,008,126)
sequence
gaattctttgggcattttttttaaatcaatagactcagaaatgcagtatt
tgttatctttgatgtccagaatgtgtttcgttacctacggtgcttaaaat
agatgctgcctgtcataagtgatcagctcctagaagcagactataaattg
tggactttataatctcacagagcgattcctctgatatggtttcgtaatgt
gttcatttgcctcatgttagaagggagaaagttttaggtttgctggcaac
aatggagaacacatcaatttctatgagcgatgaatccttgttgagggaca
agacacagttctaacatttaattaagatgatgttgctctctctggacctc
gaccttagacaaccaactgtagccaactaaggaattctgagagtgagagg
aatagttttctcaagagaagagcccctcagttggttacccattaccagag
gggtcagctctgaaatcacatacaaacaagtaacatcatacagactggac
agattgtactgatttatacatgaatataaatatgtatgccaatagttttt
aaataaggtcatgaatttatgataaaaaagcaagagagatgtacatggaa
tggtctgaagaaggggaaagggagcagggaatgatctaattccattttaa
ttcaaaaaataaacacacacacacacacacacactacccttctatgccat
ttttctttgtgtctgttttaacgtaggcaaggttacagggtcttgttggg
ttattggaagtaggaaacataagacccaatatcgtacctcaacagtgttt
gattcttactttgtgttcacaaactagttttatggcagtgattgaaaacc
atttctctaggcaaatctcagtaagctgcagcagtaagcgaataccttgc
ctgtcccatccatccagccaacaatgtaactgtagcacagataaagtcga
ggaccaaagctatgtcagactatcttgatatctctactagaaatacggat
cctatacatatactataacaaagacgtaagggtaaagtggtttctgtata
aagaaagctaactggtggagaaaacatgcctggacatcagactaaaacct
ttttcagagtagtaacccatggggggagcc
gaattcacacaaaacatctctagacagagagggacacttcacagaggtag
agcggggtggaacttcactatggaccagacctgggctttccctgcccatc
aatacaaactttgctctctgaagaggctgaagtgccttttctttggagat
ggcagtggggaagggagctggagaggggaccgtgagtggtttttctgaga
aacagaatccagcttaaaagacttttctatattgttgttaaagtttgtat
gttcgttgtacctctgactatctcataggttgttgtttaagtattgtgac
tccgtctactctatgaatgttttaagtttgagaaaaagtaatgtttacta
aaaaacaaaaaagtcctagatttgcttctcttccatccctgctggaatct
acatgttgcccaaagcgtctttaaatcgtgtgcaagtgacctgattgcac
tggggaagccatggtccttgtcattcccactcacacctctgctgaggaca
ggatggggagtggagctgaagtcctatttgttgtgcagaagtctcccagt
actgagaaccccccacccccacccccacccagctaaggccttgagcagga
ccctgcattccatgcctcttcagagaattgctttgctcaatgtcaagctc
ggcttttctcctacacagcttcatgctactatacaattttgcagcatgta
aatccaataggccttgtagccaggtatttgtttgtttgtcgttttgtttt
accaggtttgctttcattaaacctgaattatttgggtggcatagtgtcta
aagagcaagcttatagtccagaggatctttcatgatgatttcagtcagag
gaaaaaaaaaaaatcatgggagcctcgtacaacccaaaataatgtgtggc
catctttgcacaattagacataaaacaattagacataaaacacacagtta
aggcccgagtcactgcactttccttttctcaagaggggagagcagtttaa
taagtagtctgtggcagtctcatcccctacagtgggagaggtatttagcg
ttgcttaccagtgaaaacgggttcttggggaggccttctggtgcatcaaa
tctctcaaggctcaggaagtgccactctgacctgcttcccaattcatcca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_77167627_77168760
seq2: B6Ng01-190G11.b_44_1173 (reverse)

seq1  GGCTCCCCCCACTGAGTTTACCTAACTCTGAAAAGGGTTTTAGTCTGATG  50
      ||||||||||| || | ||||   |||||||||| |||||||||||||||
seq2  GGCTCCCCCCA-TG-GGTTAC--TACTCTGAAAAAGGTTTTAGTCTGATG  46

seq1  TCCCAGCCTTTGTTTCTCCA-CAGTTAGCTTTCTTTATACAGAAACCACC  99
      | |||| | |  |||||||| ||||||||||||||||||||||||||| |
seq2  T-CCAGGCATGTTTTCTCCACCAGTTAGCTTTCTTTATACAGAAACCA-C  94

seq1  TTTACCC-TACGTCTTTG-TATAGTATATGTATAGGATCCGTATTTCTAG  147
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  TTTACCCTTACGTCTTTGTTATAGTATATGTATAGGATCCGTATTTCTAG  144

seq1  TAGAGATATCAAGATAGTCTTGACATAGCTTTGGTCCTCGACTTTATCTG  197
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGAGATATCAAGATAGTC-TGACATAGCTTTGGTCCTCGACTTTATCTG  193

seq1  TGCTACAGTTACATTGTTGGCTGGATGGATGGGACAGGCAAGGTATTCGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGTTACATTGTTGGCTGGATGGATGGGACAGGCAAGGTATTCGC  243

seq1  TTACTGCTGCAGCTTACTGAGATTTGCCTAGAGAAATGGTTTTCAATCAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTGCAGCTTACTGAGATTTGCCTAGAGAAATGGTTTTCAATCAC  293

seq1  TGCCATAAAACTAGTTTGTGAACACAAAGTAAGAATCAAACACTGTTGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAAAACTAGTTTGTGAACACAAAGTAAGAATCAAACACTGTTGAG  343

seq1  GTACGATATTGGGTCTTATGTTTCCTACTTCCAATAACCCAACAAGACCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGATATTGGGTCTTATGTTTCCTACTTCCAATAACCCAACAAGACCC  393

seq1  TGTAACCTTGCCTACGTTAAAACAGACACAAAGAAAAATGGCATAGAAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCTTGCCTACGTTAAAACAGACACAAAGAAAAATGGCATAGAAGG  443

seq1  GTAGTGTGTGTGTGTGTGTGTGTGTTTATTTTTTGAATTAAAATGGAATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTGTGTGTGTGTGTGTGTGTTTATTTTTTGAATTAAAATGGAATT  493

seq1  AGATCATTCCCTGCTCCCTTTCCCCTTCTTCAGACCATTCCATGTACATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTCCCTGCTCCCTTTCCCCTTCTTCAGACCATTCCATGTACATC  543

seq1  TCTCTTGCTTTTTTATCATAAATTCATGACCTTATTTAAAAACTATTGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCTTTTTTATCATAAATTCATGACCTTATTTAAAAACTATTGGC  593

seq1  ATACATATTTATATTCATGTATAAATCAGTACAATCTGTCCAGTCTGTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATTTATATTCATGTATAAATCAGTACAATCTGTCCAGTCTGTAT  643

seq1  GATGTTACTTGTTTGTATGTGATTTCAGAGCTGACCCCTCTGGTAATGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTACTTGTTTGTATGTGATTTCAGAGCTGACCCCTCTGGTAATGGG  693

seq1  TAACCAACTGAGGGGCTCTTCTCTTGAGAAAACTATTCCTCTCACTCTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAACTGAGGGGCTCTTCTCTTGAGAAAACTATTCCTCTCACTCTCA  743

seq1  GAATTCCTTAGTTGGCTACAGTTGGTTGTCTAAGGTCGAGGTCCAGAGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTTGGCTACAGTTGGTTGTCTAAGGTCGAGGTCCAGAGAG  793

seq1  AGCAACATCATCTTAATTAAATGTTAGAACTGTGTCTTGTCCCTCAACAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATCATCTTAATTAAATGTTAGAACTGTGTCTTGTCCCTCAACAA  843

seq1  GGATTCATCGCTCATAGAAATTGATGTGTTCTCCATTGTTGCCAGCAAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATCGCTCATAGAAATTGATGTGTTCTCCATTGTTGCCAGCAAAC  893

seq1  CTAAAACTTTCTCCCTTCTAACATGAGGCAAATGAACACATTACGAAACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTTTCTCCCTTCTAACATGAGGCAAATGAACACATTACGAAACC  943

seq1  ATATCAGAGGAATCGCTCTGTGAGATTATAAAGTCCACAATTTATAGTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGAGGAATCGCTCTGTGAGATTATAAAGTCCACAATTTATAGTCT  993

seq1  GCTTCTAGGAGCTGATCACTTATGACAGGCAGCATCTATTTTAAGCACCG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGGAGCTGATCACTTATGACAGGCAGCATCTATTTTAAGCACCG  1043

seq1  TAGGTAACGAAACACATTCTGGACATCAAAGATAACAAATACTGCATTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAACGAAACACATTCTGGACATCAAAGATAACAAATACTGCATTTC  1093

seq1  TGAGTCTATTGATTTAAAAAAAATGCCCAAAGAATTC  1134
      |||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTATTGATTTAAAAAAAATGCCCAAAGAATTC  1130

seq1: chr2_77006974_77008126
seq2: B6Ng01-190G11.g_65_1214

seq1  GAATTCACACAAAACATCTCTAGACAGAGAGGGACACTTCACAGAGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAAAACATCTCTAGACAGAGAGGGACACTTCACAGAGGTAG  50

seq1  AGCGGGGTGGAACTTCACTATGGACCAGACCTGGGCTTTCCCTGCCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGGTGGAACTTCACTATGGACCAGACCTGGGCTTTCCCTGCCCATC  100

seq1  AATACAAACTTTGCTCTCTGAAGAGGCTGAAGTGCCTTTTCTTTGGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAACTTTGCTCTCTGAAGAGGCTGAAGTGCCTTTTCTTTGGAGAT  150

seq1  GGCAGTGGGGAAGGGAGCTGGAGAGGGGACCGTGAGTGGTTTTTCTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGGGAAGGGAGCTGGAGAGGGGACCGTGAGTGGTTTTTCTGAGA  200

seq1  AACAGAATCCAGCTTAAAAGACTTTTCTATATTGTTGTTAAAGTTTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATCCAGCTTAAAAGACTTTTCTATATTGTTGTTAAAGTTTGTAT  250

seq1  GTTCGTTGTACCTCTGACTATCTCATAGGTTGTTGTTTAAGTATTGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTTGTACCTCTGACTATCTCATAGGTTGTTGTTTAAGTATTGTGAC  300

seq1  TCCGTCTACTCTATGAATGTTTTAAGTTTGAGAAAAAGTAATGTTTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCTACTCTATGAATGTTTTAAGTTTGAGAAAAAGTAATGTTTACTA  350

seq1  AAAAACAAAAAAGTCCTAGATTTGCTTCTCTTCCATCCCTGCTGGAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAAGTCCTAGATTTGCTTCTCTTCCATCCCTGCTGGAATCT  400

seq1  ACATGTTGCCCAAAGCGTCTTTAAATCGTGTGCAAGTGACCTGATTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGCCCAAAGCGTCTTTAAATCGTGTGCAAGTGACCTGATTGCAC  450

seq1  TGGGGAAGCCATGGTCCTTGTCATTCCCACTCACACCTCTGCTGAGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGCCATGGTCCTTGTCATTCCCACTCACACCTCTGCTGAGGACA  500

seq1  GGATGGGGAGTGGAGCTGAAGTCCTATTTGTTGTGCAGAAGTCTCCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGAGTGGAGCTGAAGTCCTATTTGTTGTGCAGAAGTCTCCCAGT  550

seq1  ACTGAGAACCCCCCACCCCCACCCCCACCCAGCTAAGGCCTTGAGCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAACCCCCCACCCCCACCCCCACCCAGCTAAGGCCTTGAGCAGGA  600

seq1  CCCTGCATTCCATGCCTCTTCAGAGAATTGCTTTGCTCAATGTCAAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATTCCATGCCTCTTCAGAGAATTGCTTTGCTCAATGTCAAGCTC  650

seq1  GGCTTTTCTCCTACACAGCTTCATGCTACTATACAATTTTGCAGCATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCTCCTACACAGCTTCATGCTACTATACAATTTTGCAGCATGTA  700

seq1  AATCCAATAGGCCTTGTAGCCAGGTATTTGTTTGTTTGTCGTTTTGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAATAGGCCTTGTAGCCAGGTATTTGTTTGTTTGTCGTTTTGTTTT  750

seq1  ACCAGGTTTGCTTTCATTAAACCTGAATTATTTGGGTGGCATAGTGTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTTGCTTTCATTAAACCTGAATTATTTGGGTGGCATAGTGTCTA  800

seq1  AAGAGCAAGCTTATAGTCCAGAGGATCTTTCATGATGATTTCAGTCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAAGCTTATAGTCCAGAGGATCTTTCATGATGATTTCAGTCAGAG  850

seq1  GAAAAAAAAAAAATCATGGGAGCCTCGTACAACCCAAAATAATGTGTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAATCATGGGAGCCTCGTACAACCCAAAATAATGTGTGGC  900

seq1  CATCTTTGCACAATTAGACATAAAACAATTAGACATAAAACACACAGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGCACAATTAGACATAAAACAATTAGACATAAAACACACAGTTA  950

seq1  AGGCCCGAGTCACTGCACTTTCCTTTTCTCAAGAGGGAGAG-GCAGTTTA  999
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  AGGCCCGAGTCACTGCACTTTCCTTTTCTCAAGAGGG-GAGAGCAGTTTA  999

seq1  ATAAGTAGTCTGTGGCAGTCTCCATCCCCCTACAGTGGGAGAAGTATTTA  1049
      ||||||||||||||||||||| ||| |||||||||||||||| |||||||
seq2  ATAAGTAGTCTGTGGCAGTCT-CAT-CCCCTACAGTGGGAGAGGTATTTA  1047

seq1  GCGTTGCCTTTACCAGTGAAAACCGGTTCT--GGGAGG-CTTCTGGTGCA  1096
      |||||||  |||||||||||||| ||||||  |||||| |||||||||||
seq2  GCGTTGC--TTACCAGTGAAAACGGGTTCTTGGGGAGGCCTTCTGGTGCA  1095

seq1  TCCAGTTCTCTCAA-GCTCAGGACAGTGCCCCACTCTGACCTGCCTCCCC  1145
      | ||  |||||||| |||||||| ||||  |||||||||||||| |||| 
seq2  T-CAAATCTCTCAAGGCTCAGGA-AGTG--CCACTCTGACCTGCTTCCCA  1141

seq1  ATTC-TCCA  1153
      |||| ||||
seq2  ATTCATCCA  1150