BAC Information

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BAC

Clone NameB6Ng01-190N06
Chromosome2 (Build37)2 (Build37)
Map Location 100,607,668 - 100,608,08078,836,418 - 78,837,554
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190N06.bB6Ng01-190N06.g
ACCGA014488GA014489
length9871,133
definitionB6Ng01-190N06.b B6Ng01-190N06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,607,668 - 100,608,080)(78,836,418 - 78,837,554)
sequence
gaattctgtagacttcttgtatgttcttgggcatctctttttttaagtta
ggaaagttttcttctataatttttatgaagatatttactggccctttaag
ttgataatcttcattctcatctatacctattattcttaggtttggtcttc
tcattgtgtcctggatttcctggatgttttgagttaggaagtttttgcat
tttgcattttctttgattgttgtgctgatgttttctatggtatcttctgc
agctgagattctctcttctatctcttgtattctgttgctgatgcttgcat
ctatgtctcctgatttctttcctaggatttctatcttgagagttgtctcc
ctttgtgttttctttattgtttctacttccatttttagatcttggatggt
ttttgttcaattcagtcacctctttacaggttgtgttttgctataattct
ttaagggatttttgtgtttcctctttaaggacttctacctgttttagcta
tgctcttctgtatttaagtgagttattaattcttcttaaaatcctctacc
agcaccatgagttatgattttaaatctgaatgttgcttttccagtgtgtt
cggttatccaggactcactgtggtgggagaactgggttctgatgatgtca
agtagtcttggtttctgttggtaagattcttatgcttgcctttcgccatc
tggtaaactctggtgttagatgttctagctgtctctggctggagcatgtt
cctcctgtgagtctgttagcctgtgtcagtactcctgggagaccagctct
ctcctggcaagaccagtgcagagagggcttcagaacagccccacctcctg
gtgtatgtatgcccctggcagatgtatgccccttaggaccttgtccttag
aagctctgatatctttgctctcctgagtggacccaccttcagagagacac
cagagagaaactgtgatctcacctgtgtcccgggtca

gaattcccacaacaatcacaagtaataaagatcctaagatgccaagacct
gtatgtccttgttgggttatggctgaggacaacttggaattcaagttaaa
cagttttgatatcttagaattctgctgtgtttggcttagagttgaaccag
gaagaatgacagtcagcttttcttcccaagggccagacattatgtctaag
agggatgataaagcatttgacatcagcaagccgtgtggggtacgggtcac
agggtggagctgatggcgaacacttcaaatattcaaggagtttcttttcc
ctagtttacgactgccctgtaattttcattattaattaacttcttatata
gtcgcttgttgtttcagctgaggaaaagctatcatttattttgtctcttc
catttttagttcacccatctgtatatttatcctttctacgccactccttc
actgtagatttggaataataatctgctcatcacgaatgacttccgatgaa
aagtaaaaccacctcatgggtttaattaatgatcttcaagtgagtttctc
aaatgaaccttttgcttctttagaagccctcagtaattacccgagaaact
tgagcagtctgtgcctgcgcactcctcgctgcaaggctgggcgaaaaccc
atggcttttttttttttcttccaggaatctatcattctgtttttctccat
ccacttcactttctatagagatcaaaattatcatatcttcccattagttt
tctgaagatcagtgaggaagctagaaaattatacaatataattatttgat
ctgcttaaggttccatttcttttcatgtcataagcagtaaaaaatttgga
agagctaattaagtagaaattgaggatttagaattcccaaacaattttgt
tctcttcaggataatgttcatatttcagcgtaagctgtgatctggccgtt
gctacattgtttaggcatccttactccagataatataccaacaaagaaga
aagggcagtctgtgagcttgtgctttgatagtgagacctgattagccctt
acagactccactgttacaaaccacctccacagcatgctactcggatctct
gttctcagatctgcaggtctgaactctttgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100607668_100608080
seq2: B6Ng01-190N06.b_99_539 (reverse)

seq1  AAACAGGTAGAAGTCCTTATAGA-------------------AAA-----  26
      ||||||||||||||||||| |||                   |||     
seq2  AAACAGGTAGAAGTCCTTAAAGAGGAAACACAAAAATCCCTTAAAGAATT  50

seq1  ACAGGAAAACACATCC---AAACAGGTGATGGAAATGAAC-AAAACCATA  72
      | || |||||||| ||   ||| ||||||  ||| ||||| |||||||| 
seq2  ATAGCAAAACACAACCTGTAAAGAGGTGACTGAATTGAACAAAAACCATC  100

seq1  CTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGC  122
      | ||| ||||||| ||||||||| |||||||||||||| ||||| ||| |
seq2  CAAGATCTAAAAATGGAAGTAGAAACAATAAAGAAAACACAAAGGGAGAC  150

seq1  GACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCA  172
       || ||  ||||||||| ||||||||||||||| |||  ||||||||| |
seq2  AACTCTCAAGATAGAAATCCTAGGAAAGAAATCAGGAGACATAGATGCAA  200

seq1  GCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAA  222
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  GCATCAGCAACAGAATACAAGAGATAGAAGAGAGAATCTCAGCTGCAGAA  250

seq1  GACTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAA  272
      ||  ||||||| |||||| ||||||||||||||||||||| |||||||||
seq2  GATACCATAGAAAACATCAGCACAACAATCAAAGAAAATGCAAAATGCAA  300

seq1  AAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGAC  322
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGAC  350

seq1  CAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAA  372
      |||||||| | ||||||||  | |||||||||||||||| |||||| |||
seq2  CAAACCTAAGAATAATAGGTATAGATGAGAATGAAGATTATCAACTTAAA  400

seq1  GGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTT  413
      || |||| ||| |||||||  |||||||| |||||||||||
seq2  GGGCCAGTAAATATCTTCATAAAAATTATAGAAGAAAACTT  441


seq1: chr2_78836418_78837554
seq2: B6Ng01-190N06.g_65_1197 (reverse)

seq1  AAGCAAAGAGTCAGGACCTGCAGATCTGAGGAACAGAGA-CCGAGTAGCA  49
      |||||||||||   ||||||||||||||| ||||||||| ||||||||||
seq2  AAGCAAAGAGTTCAGACCTGCAGATCTGA-GAACAGAGATCCGAGTAGCA  49

seq1  TGCCTGT-GAGGT-GTTTGGTACAGTGGAGTCTGTAAGGGGCTAATCAGG  97
      || |||| ||||| |||||  |||||||||||||||| ||||||||||||
seq2  TG-CTGTGGAGGTGGTTTGTAACAGTGGAGTCTGTAA-GGGCTAATCAGG  97

seq1  TCTCACTATCAAAGCAACAAGCTCCACAGACTGCCCTTTCTTCTTTGTTG  147
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  TCTCACTATCAAAGC-ACAAGCT-CACAGACTGCCCTTTCTTCTTTGTTG  145

seq1  GTATATTATCTTGGAGTAAGGATGCCTAAACAATGTAGCAACGGCCAGAT  197
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTATATTATC-TGGAGTAAGGATGCCTAAACAATGTAGCAACGGCCAGAT  194

seq1  CACAGCCTTACGCTGAAATATGAACATTATCCTGAAGAGAACAAAATTGT  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAG-CTTACGCTGAAATATGAACATTATCCTGAAGAGAACAAAATTGT  243

seq1  TTGGGAATTCTAAATCCTCAATTTCTACTTAATTAGCTCTTCCAAATTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATTCTAAATCCTCAATTTCTACTTAATTAGCTCTTCCAAATTTT  293

seq1  TTACTGCTTATGACATGAAAAGAAATGGAACCTTAAGCAGATCAAATAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTTATGACATGAAAAGAAATGGAACCTTAAGCAGATCAAATAAT  343

seq1  TATATTGTATAATTTTCTAGCTTCCTCACTGATCTTCAGAAAACTAATGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTATAATTTTCTAGCTTCCTCACTGATCTTCAGAAAACTAATGG  393

seq1  GAAGATATGATAATTTTGATCTCTATAGAAAGTGAAGTGGATGGAGAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATGATAATTTTGATCTCTATAGAAAGTGAAGTGGATGGAGAAAA  443

seq1  ACAGAATGATAGATTCCTGGAAGAAAAAAAAAAAAGCCATGGGTTTTCGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGATAGATTCCTGGAAGAAAAAAAAAAAAGCCATGGGTTTTCGC  493

seq1  CCAGCCTTGCAGCGAGGAGTGCGCAGGCACAGACTGCTCAAGTTTCTCGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTGCAGCGAGGAGTGCGCAGGCACAGACTGCTCAAGTTTCTCGG  543

seq1  GTAATTACTGAGGGCTTCTAAAGAAGCAAAAGGTTCATTTGAGAAACTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTACTGAGGGCTTCTAAAGAAGCAAAAGGTTCATTTGAGAAACTCA  593

seq1  CTTGAAGATCATTAATTAAACCCATGAGGTGGTTTTACTTTTCATCGGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGATCATTAATTAAACCCATGAGGTGGTTTTACTTTTCATCGGAA  643

seq1  GTCATTCGTGATGAGCAGATTATTATTCCAAATCTACAGTGAAGGAGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCGTGATGAGCAGATTATTATTCCAAATCTACAGTGAAGGAGTGG  693

seq1  CGTAGAAAGGATAAATATACAGATGGGTGAACTAAAAATGGAAGAGACAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAAAGGATAAATATACAGATGGGTGAACTAAAAATGGAAGAGACAA  743

seq1  AATAAATGATAGCTTTTCCTCAGCTGAAACAACAAGCGACTATATAAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGATAGCTTTTCCTCAGCTGAAACAACAAGCGACTATATAAGAA  793

seq1  GTTAATTAATAATGAAAATTACAGGGCAGTCGTAAACTAGGGAAAAGAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTAATAATGAAAATTACAGGGCAGTCGTAAACTAGGGAAAAGAAA  843

seq1  CTCCTTGAATATTTGAAGTGTTCGCCATCAGCTCCACCCTGTGACCCGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGAATATTTGAAGTGTTCGCCATCAGCTCCACCCTGTGACCCGTA  893

seq1  CCCCACACGGCTTGCTGATGTCAAATGCTTTATCATCCCTCTTAGACATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACGGCTTGCTGATGTCAAATGCTTTATCATCCCTCTTAGACATA  943

seq1  ATGTCTGGCCCTTGGGAAGAAAAGCTGACTGTCATTCTTCCTGGTTCAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGCCCTTGGGAAGAAAAGCTGACTGTCATTCTTCCTGGTTCAAC  993

seq1  TCTAAGCCAAACACAGCAGAATTCTAAGATATCAAAACTGTTTAACTTGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCCAAACACAGCAGAATTCTAAGATATCAAAACTGTTTAACTTGA  1043

seq1  ATTCCAAGTTGTCCTCAGCCATAACCCAACAAGGACATACAGGTCTTGGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGTTGTCCTCAGCCATAACCCAACAAGGACATACAGGTCTTGGC  1093

seq1  ATCTTAGGATCTTTATTACTTGTGATTGTTGTGGGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGATCTTTATTACTTGTGATTGTTGTGGGAATTC  1133


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