BAC Information

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BAC

Clone NameB6Ng01-190N15
Chromosome2 (Build37)
Map Location 120,710,848 - 120,740,116
singlet/doubletdoublet
Overlap geneUbr1
Upstream geneMga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2
Downstream geneTmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190N15.bB6Ng01-190N15.g
ACCGA014504GA014505
length1,1811,139
definitionB6Ng01-190N15.b B6Ng01-190N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,710,848 - 120,712,036)(120,738,955 - 120,740,116)
sequence
gaattctacttgggctcaattttggttaaattaatcccaggggaagtgct
gaatttcctttctttgtgtgacagtggcacattttagtgcctctggggat
accattaagtgggtttaattgacaaatactacaaagtattatctcttaaa
tttgatcagtctctaatgaaaactagggaggaaaatgtctggcaaggaac
tgagatcaaggagttaaggcattgctatgcagcccaggctggtctgggaa
ctaaaaatgttcctattcaacctcataagtgctagaactacaggtatgag
ccatcatgcctgactaaaaacagttttgtatataaaaacaagaaaacaaa
ttgcatggttttacttttatctgtgtgtataggtgtgtgcagaggagata
tggaagccagaggccaaccttggatgtcctaaggtgctgtccaccctgtt
tttctgaactaggatgtctcatctggtcctatggctcaccaattaggcta
ggtttgcgggccagccagcaccttgaatctgcttgtctctgtcttattgg
tgctggtatgaaatttccataccacaatgcctaatttttatgtaggtgtt
ggagaacaaaatcaggtcctcatatttgcttggtaagtattctactaact
gagccactacaactattgttttaaatttttaaaatttatttcagtgtgca
tgtgtgtacgtacaagtgtatgcacatgcttgtaggtatattcatctgtg
tgtaaaggcagaggccagaaaaggatgtatgatctcttcttctatcaatc
tctgcctattcctttgagacagtttccatctcaaccgagggctaacattt
tcttggctcacctggaccagcaaaccccagtgattttcttgtctccactc
ctatcccatcctcacccccaaagctggagatacagatatccgaggcatgc
ttggcttgttacttgggtactggtatgtaagcctccactcttcatgatag
caggagcagtcttaaccatttgggccatctctcagcctcacaaaaactat
gataaaaagtttctcctctgactaatttctatattttgagtgggcctagc
cttaattgctgagcatctcttccagccctcatactagttctaacctcact
caatattcctagtaggtagcataaaatatta
gaattctctggctttggtcatggtaggcccaggaattgtgatggagagga
aagtaaagaaagctcatgaaaaaatatacacaagcatggaaggtgtccct
gctcttccttctccttttccaacagtctggcagaaagcaagggcaggatt
ccctctctccccggccttcctagttctgctctcccatccttccactctct
gccccactccgccctcccctgctgttcagccatggctggctggggagaat
ggcatggtaattatggctaaggctccctctcccttcttgagagatgctgc
atcatacctttaaagatggtgtgagttctggtaaaccaaggagtgaagac
aagtttaagacctacagaatgtcatctgtccttatttccttttgtaatac
ttgtggttgagattttgtagaaatttaattatgatgtaccctgtactttt
gtaattggagcacattatggtgattaaaggtaactgtattcctggcaagc
ctcttattgattgcattaactgcaaagatgctggaagtagaatccatttg
attgatgagcgtgtaatctattcctatgctattttaggtactactctcta
actctttttatttgaattccagttaaaaagtttccaacatatcttagctc
cttctccaagttagaaaaaagaaaaaggaaacaaacaaaaccaaagtctc
ctcatgctagtgataagtccataacacattgcaacatggtatttttgtgt
ttttttttttttttgtttgtttttgttttgtttttttcttttcttttctt
tgaaacagggtttctttgtatagcctggctgtcctggaacttgctctgta
gaccaggctggccttgaactcacagagatccaccagtctctgcctcctga
gtgttaggattaaaggcatgtgtcaccaccgcccagtgcaccatgttttt
acaggcatatatttattttgtttgggtttggttttcacggtgctggtgag
tgaacccaggagcatgtatattgctagacaggaactctgccactaggcac
acttacagctctcgtgtcttcttcaatccatcaatctatctatcgagcta
tcatcatctataaccaacagcaatctatctatcatctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120710848_120712036
seq2: B6Ng01-190N15.b_44_1224

seq1  GAATTCTACTTGGGCTCAATTTTGGTTAAATTAATCCCAGGGGAAGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTGGGCTCAATTTTGGTTAAATTAATCCCAGGGGAAGTGCT  50

seq1  GAATTTCCTTTCTTTGTGTGACAGTGGCACATTTTAGTGCCTCTGGGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCTTTCTTTGTGTGACAGTGGCACATTTTAGTGCCTCTGGGGAT  100

seq1  ACCATTAAGTGGGTTTAATTGACAAATACTACAAAGTATTATCTCTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAAGTGGGTTTAATTGACAAATACTACAAAGTATTATCTCTTAAA  150

seq1  TTTGATCAGTCTCTAATGAAAACTAGGGAGGAAAATGTCTGGCAAGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCAGTCTCTAATGAAAACTAGGGAGGAAAATGTCTGGCAAGGAAC  200

seq1  TGAGATCAAGGAGTTAAGGCATTGCTATGCAGCCCAGGCTGGTCTGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCAAGGAGTTAAGGCATTGCTATGCAGCCCAGGCTGGTCTGGGAA  250

seq1  CTAAAAATGTTCCTATTCAACCTCATAAGTGCTAGAACTACAGGTATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATGTTCCTATTCAACCTCATAAGTGCTAGAACTACAGGTATGAG  300

seq1  CCATCATGCCTGACTAAAAACAGTTTTGTATATAAAAACAAGAAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATGCCTGACTAAAAACAGTTTTGTATATAAAAACAAGAAAACAAA  350

seq1  TTGCATGGTTTTACTTTTATCTGTGTGTATAGGTGTGTGCAGAGGAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGGTTTTACTTTTATCTGTGTGTATAGGTGTGTGCAGAGGAGATA  400

seq1  TGGAAGCCAGAGGCCAACCTTGGATGTCCTAAGGTGCTGTCCACCCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCAGAGGCCAACCTTGGATGTCCTAAGGTGCTGTCCACCCTGTT  450

seq1  TTTCTGAACTAGGATGTCTCATCTGGTCCTATGGCTCACCAATTAGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAACTAGGATGTCTCATCTGGTCCTATGGCTCACCAATTAGGCTA  500

seq1  GGTTTGCGGGCCAGCCAGCACCTTGAATCTGCTTGTCTCTGTCTTATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCGGGCCAGCCAGCACCTTGAATCTGCTTGTCTCTGTCTTATTGG  550

seq1  TGCTGGTATGAAATTTCCATACCACAATGCCTAATTTTTATGTAGGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTATGAAATTTCCATACCACAATGCCTAATTTTTATGTAGGTGTT  600

seq1  GGAGAACAAAATCAGGTCCTCATATTTGCTTGGTAAGTATTCTACTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAAAATCAGGTCCTCATATTTGCTTGGTAAGTATTCTACTAACT  650

seq1  GAGCCACTACAACTATTGTTTTAAATTTTTAAAATTTATTTCAGTGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTACAACTATTGTTTTAAATTTTTAAAATTTATTTCAGTGTGCA  700

seq1  TGTGTGTACGTACAAGTGTATGCACATGCTTGTAGGTATATTCATCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTACGTACAAGTGTATGCACATGCTTGTAGGTATATTCATCTGTG  750

seq1  TGTAAAGGCAGAGGCCAGAAAAGGATGTATGATCTCTTCTTCTATCAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGGCAGAGGCCAGAAAAGGATGTATGATCTCTTCTTCTATCAATC  800

seq1  TCTGCCTATTCCTTTGAGACAGTTTCCATCTCAACCGAGGGCTAACATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTATTCCTTTGAGACAGTTTCCATCTCAACCGAGGGCTAACATTT  850

seq1  TCTTGGCTCACCTGGACCAGCAAACCCCAGTGATTTTCTTGTCTCCACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTCACCTGGACCAGCAAACCCCAGTGATTTTCTTGTCTCCACTC  900

seq1  CTATCCCATCCTCACCCCCAAAGCTGGAGATACAGATATCCGAGGCATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCATCCTCACCCCCAAAGCTGGAGATACAGATATCCGAGGCATGC  950

seq1  TTGGCTTGTTACTTGGGTACTGGTATGTAAG-CTCCACTCTTCATGATAG  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTGGCTTGTTACTTGGGTACTGGTATGTAAGCCTCCACTCTTCATGATAG  1000

seq1  CA-GAGCAGTCTTAACCA-TTGGGCCATCTCTCCAGCCTCAACAAAAACT  1047
      || ||||||||||||||| ||||||||||||| ||||||| |||||||||
seq2  CAGGAGCAGTCTTAACCATTTGGGCCATCTCT-CAGCCTC-ACAAAAACT  1048

seq1  AAGGATAAAAAGTTTCTCCTCTGACTAATTTCTTATATTTTTGGTTGTGG  1097
       | ||||||||||||||||||||||||||||| ||||||||     ||||
seq2  -ATGATAAAAAGTTTCTCCTCTGACTAATTTC-TATATTTT---GAGTGG  1093

seq1  GCCTAGCCTTTAATGGCTGAGCCATCTC-TCCAGCCCTCATACTAATTTC  1146
      |||||||| ||||| |||||| |||||| |||||||||||||||| ||  
seq2  GCCTAGCC-TTAATTGCTGAG-CATCTCTTCCAGCCCTCATACTAGTT--  1139

seq1  TTAACCTCAACTTCAATATTCTAAGTAAGTAGCAT-AAATATTA  1189
       ||||||||   |||||||||  |||| ||||||| ||||||||
seq2  CTAACCTCA--CTCAATATTCCTAGTAGGTAGCATAAAATATTA  1181

seq1: chr2_120738955_120740116
seq2: B6Ng01-190N15.g_64_1202 (reverse)

seq1  GTAGATGATAGATAGATAGATAGATAGATAGATAGGTAGATAGATAGATA  50
      ||||||||||||||||| | |              || | |      |||
seq2  GTAGATGATAGATAGATTGCT--------------GTTGGT-----TATA  31

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGATAGAAAGAAAGAACAA  100
      ||| ||| ||||| | ||||||||||| ||| ||| |||   ||||   |
seq2  GAT-GAT-GATAGCTCGATAGATAGATTGATGGATTGAA--GAAGA--CA  75

seq1  AGAGAGCTGTAAGTGTGGCTTAGTGGCAGAGTTCCTGTCTAGC-ATATAC  149
       ||||||||||||||| || ||||||||||||||||||||||| ||||||
seq2  CGAGAGCTGTAAGTGT-GCCTAGTGGCAGAGTTCCTGTCTAGCAATATAC  124

seq1  ATGCTCCTGGGTTCACTCACCAGCACCGTGAAAACCAAA-CCAAACAAAA  198
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGCTCCTGGGTTCACTCACCAGCACCGTGAAAACCAAACCCAAACAAAA  174

seq1  TAAATATATGCCTGTAAAAACATGGTGCACTGGGCGGTGGTGACACATGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATGCCTGTAAAAACATGGTGCACTGGGCGGTGGTGACACATGC  224

seq1  CTTTAATCCTAACACTCAGGAGGCAGAGACTGGTGGATCTCTGTGAGTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCTAACACTCAGGAGGCAGAGACTGGTGGATCTCTGTGAGTTC  274

seq1  AAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGACAGCCAGGCTATACAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGACAGCCAGGCTATACAA  324

seq1  AGAAACCCTGTTTCAAAGAAAAGAAAAGAAAAAAACAAAACAAAAACAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTTTCAAAGAAAAGAAAAGAAAAAAACAAAACAAAAACAAA  374

seq1  C-AAAAAAAAAAAAAACACAAAAATACCATGTTGCAATGTGTTATGGACT  447
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAACACAAAAATACCATGTTGCAATGTGTTATGGACT  424

seq1  TATCACTAGCATGAGGAGACTTTGGTTTTGTTTGTTTCCTTTTTCTTTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTAGCATGAGGAGACTTTGGTTTTGTTTGTTTCCTTTTTCTTTTT  474

seq1  TCTAACTTGGAGAAGGAGCTAAGATATGTTGGAAACTTTTTAACTGGAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTGGAGAAGGAGCTAAGATATGTTGGAAACTTTTTAACTGGAAT  524

seq1  TCAAATAAAAAGAGTTAGAGAGTAGTACCTAAAATAGCATAGGAATAGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAAAAAGAGTTAGAGAGTAGTACCTAAAATAGCATAGGAATAGAT  574

seq1  TACACGCTCATCAATCAAATGGATTCTACTTCCAGCATCTTTGCAGTTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCTCATCAATCAAATGGATTCTACTTCCAGCATCTTTGCAGTTAA  624

seq1  TGCAATCAATAAGAGGCTTGCCAGGAATACAGTTACCTTTAATCACCATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCAATAAGAGGCTTGCCAGGAATACAGTTACCTTTAATCACCATA  674

seq1  ATGTGCTCCAATTACAAAAGTACAGGGTACATCATAATTAAATTTCTACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTCCAATTACAAAAGTACAGGGTACATCATAATTAAATTTCTACA  724

seq1  AAATCTCAACCACAAGTATTACAAAAGGAAATAAGGACAGATGACATTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCAACCACAAGTATTACAAAAGGAAATAAGGACAGATGACATTCT  774

seq1  GTAGGTCTTAAACTTGTCTTCACTCCTTGGTTTACCAGAACTCACACCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCTTAAACTTGTCTTCACTCCTTGGTTTACCAGAACTCACACCAT  824

seq1  CTTTAAAGGTATGATGCAGCATCTCTCAAGAAGGGAGAGGGAGCCTTAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGGTATGATGCAGCATCTCTCAAGAAGGGAGAGGGAGCCTTAGC  874

seq1  CATAATTACCATGCCATTCTCCCCAGCCAGCCATGGCTGAACAGCAGGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTACCATGCCATTCTCCCCAGCCAGCCATGGCTGAACAGCAGGGG  924

seq1  AGGGCGGAGTGGGGCAGAGAGTGGAAGGATGGGAGAGCAGAACTAGGAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGGAGTGGGGCAGAGAGTGGAAGGATGGGAGAGCAGAACTAGGAAG  974

seq1  GCCGGGGAGAGAGGGAATCCTGCCCTTGCTTTCTGCCAGACTGTTGGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGGAGAGAGGGAATCCTGCCCTTGCTTTCTGCCAGACTGTTGGAAA  1024

seq1  AGGAGAAGGAAGAGCAGGGACACCTTCCATGCTTGTGTATATTTTTTCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGAAGAGCAGGGACACCTTCCATGCTTGTGTATATTTTTTCAT  1074

seq1  GAGCTTTCTTTACTTTCCTCTCCATCACAATTCCTGGGCCTACCATGACC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTCTTTACTTTCCTCTCCATCACAATTCCTGGGCCTACCATGACC  1124

seq1  AAAGCCAGAGAATTC  1162
      |||||||||||||||
seq2  AAAGCCAGAGAATTC  1139