BAC Information

Click to search

BAC

Clone NameB6Ng01-190P15
Chromosome2 (Build37)
Map Location 99,944,912 - 100,137,949
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC621386, LOC668702
Downstream geneLOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190P15.bB6Ng01-190P15.g
ACCGA014595GA014596
length1,133696
definitionB6Ng01-190P15.b B6Ng01-190P15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,136,796 - 100,137,949)(99,944,912 - 99,945,607)
sequence
gaattcttttctaaaacataaatgttcatcaagtgtatggaatggggtat
gactttactactcatcataataatacaaatatacaatagtaaaatatttt
ccccatctattaggcttgtcacagaagtgaaaatgaggtgagtcttttta
aataaatttaaaatgatgctactaacactttgtcttctgaaacatattaa
ttttgcataatacctttaatgagaaacccaagagaggaaagactttttga
catagtcttatgtatacagactgtccttagcttgttatgcagtcactgaa
gaccttgaaagacacctttaatgtagctattacagtctgatgcagataca
gagtattataccacacttatcaggaaagactaattgtgatttgagttttc
agaattttctttccatgattgttggactgcagagcacactatgtgggtaa
aacaatggagttcttcatgtcattagataaaggaagaggagagatgagga
tagtgagagccatgttcattctctgaaagtattttctactcattttcttt
ctctaactgaccccattttctaaatttccaaatcattctgaactaatatc
aatatcttaagaacaggcattctaacactttagtttataaagagcattta
tactgtcatacaaaagtccactcttttttttttttaattcactcttgata
aataagacttctggccatttcataaagtagaatatatttggctcagctcc
aggggttctcaatatcgcaacagcttaaatatttctctagagtgtaaatt
caaagtaactcctggcatcatcagtacattctatattctcctgaagtttt
gcctgcaatcccccagacatcattgcattttgtagaatatctgtggggaa
tctatatcctgctccaatacctggcttccaagaccttcatgagacttctg
ggatgaagcctcaagtctaaaccattacattgaacatgcatgaaaaatag
tactcatgaatgaccactaaatatgcctactagtatctggcctctgagca
gatatcgtgctctggatttctagatatctgatatgtaccccgttttctgg
atgccgtagcaaggtaggccagatacattgaca

gaattctcctgatgtgaaaagatctactcatgaatccctgttgtcaggct
tttcctagcctggactttattagtacacaccaggacaggagacagaatga
gcatttcctattttctattcctcttttgtatatatttgctgtccatattt
ggactcagatattagatgagaaaagtactatactataaggattcagaata
atagaaaaaagaagagattaaacttatacaaagatgagcatataggataa
aatagttttgtttgttgattatttgattggcttactgataactcatctca
tactataacttgggataatctgaaatgcatagaagagttgacatgatatc
caaagatttgtgtacctcctgtcttagccttacttctgctggatgtacaa
acacaagccttcacaccaagtgattgaaatttgaattatacaacatagtt
atccagattcaatgaatatccttttgttttttaatcactaaatataaatc
ctactaagctagttattatcaaagttgagaatatttctttctctgaagta
tgttattagttctttaagaattgtatgtattgtattttcactatatccac
tgctcaaagaacaacccctatattgattcatgtccagtactctctctctc
tctctctctctctctctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100136796_100137949
seq2: B6Ng01-190P15.b_48_1180 (reverse)

seq1  TGTCAATTGTATCTGGGGCCTACCTTGGCTTACGGCCATCAGAAAAGGGG  50
      |||||| |||||||  |||||||||||   ||||||   ||||||| |||
seq2  TGTCAA-TGTATCT--GGCCTACCTTG--CTACGGCATCCAGAAAACGGG  45

seq1  GTTACATTAATTCAGATATCTAGAAATTCAGAGGCCACGATAATCCTGCT  100
      | |||||    |||||||||||||||| |||||  |||||||   |||||
seq2  G-TACAT---ATCAGATATCTAGAAATCCAGAG--CACGATA--TCTGCT  87

seq1  CCAAGAGGCCAGAATACTAGTAAGGCATATTTTAGT-GTCATTCATGAGG  149
      |  ||||||||| |||||||| ||||||| |||||| ||||||||||| |
seq2  C--AGAGGCCAG-ATACTAGT-AGGCATA-TTTAGTGGTCATTCATGA-G  131

seq1  TACTATTTTTTCATGCATGTTCAATGTAATGGTTTTAGACTTTGAGGCTT  199
      ||||| |||||||||||||||||||||||||| ||||||| |||||||||
seq2  TACTA-TTTTTCATGCATGTTCAATGTAATGG-TTTAGAC-TTGAGGCTT  178

seq1  CATCCCAGAAGTCTCATGAAGGTCTTGGAAGCCAGGTATTGGAGCAGGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGAAGTCTCATGAAGGTCTTGGAAGCCAGGTATTGGAGCAGGAT  228

seq1  ATAGATTCCCCACAGATATTCTACAAAATGCAATGATGTCTGGGGGATTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTCCCCACAGATATTCTACAAAATGCAATGATGTCTGGGGGATTG  278

seq1  CAGGCAAAACTTCAGGAGAATATAGAATGTACTGATGATGCCAGGAGTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAACTTCAGGAGAATATAGAATGTACTGATGATGCCAGGAGTTA  328

seq1  CTTTGAATTTACACTCTAGAGAAATATTTAAGCTGTTGCGATATTGAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATTTACACTCTAGAGAAATATTTAAGCTGTTGCGATATTGAGAA  378

seq1  CCCCTGGAGCTGAGCCAAATATATTCTACTTTATGAAATGGCCAGAAGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGAGCTGAGCCAAATATATTCTACTTTATGAAATGGCCAGAAGTC  428

seq1  TTATTTATCAAGAGTGAATTAAAAAAAAAAAAGAGTGGACTTTTGTATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATCAAGAGTGAATTAAAAAAAAAAAAGAGTGGACTTTTGTATGA  478

seq1  CAGTATAAATGCTCTTTATAAACTAAAGTGTTAGAATGCCTGTTCTTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAAATGCTCTTTATAAACTAAAGTGTTAGAATGCCTGTTCTTAAG  528

seq1  ATATTGATATTAGTTCAGAATGATTTGGAAATTTAGAAAATGGGGTCAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATATTAGTTCAGAATGATTTGGAAATTTAGAAAATGGGGTCAGT  578

seq1  TAGAGAAAGAAAATGAGTAGAAAATACTTTCAGAGAATGAACATGGCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGAAAATGAGTAGAAAATACTTTCAGAGAATGAACATGGCTCT  628

seq1  CACTATCCTCATCTCTCCTCTTCCTTTATCTAATGACATGAAGAACTCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCCTCATCTCTCCTCTTCCTTTATCTAATGACATGAAGAACTCCA  678

seq1  TTGTTTTACCCACATAGTGTGCTCTGCAGTCCAACAATCATGGAAAGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTACCCACATAGTGTGCTCTGCAGTCCAACAATCATGGAAAGAAA  728

seq1  ATTCTGAAAACTCAAATCACAATTAGTCTTTCCTGATAAGTGTGGTATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAAACTCAAATCACAATTAGTCTTTCCTGATAAGTGTGGTATAA  778

seq1  TACTCTGTATCTGCATCAGACTGTAATAGCTACATTAAAGGTGTCTTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTATCTGCATCAGACTGTAATAGCTACATTAAAGGTGTCTTTCA  828

seq1  AGGTCTTCAGTGACTGCATAACAAGCTAAGGACAGTCTGTATACATAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCAGTGACTGCATAACAAGCTAAGGACAGTCTGTATACATAAGA  878

seq1  CTATGTCAAAAAGTCTTTCCTCTCTTGGGTTTCTCATTAAAGGTATTATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCAAAAAGTCTTTCCTCTCTTGGGTTTCTCATTAAAGGTATTATG  928

seq1  CAAAATTAATATGTTTCAGAAGACAAAGTGTTAGTAGCATCATTTTAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAATATGTTTCAGAAGACAAAGTGTTAGTAGCATCATTTTAAAT  978

seq1  TTATTTAAAAAGACTCACCTCATTTTCACTTCTGTGACAAGCCTAATAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAAAAGACTCACCTCATTTTCACTTCTGTGACAAGCCTAATAGA  1028

seq1  TGGGGAAAATATTTTACTATTGTATATTTGTATTATTATGATGAGTAGTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAATATTTTACTATTGTATATTTGTATTATTATGATGAGTAGTA  1078

seq1  AAGTCATACCCCATTCCATACACTTGATGAACATTTATGTTTTAGAAAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATACCCCATTCCATACACTTGATGAACATTTATGTTTTAGAAAAG  1128

seq1  AATTC  1154
      |||||
seq2  AATTC  1133


seq1: chr2_99944912_99945607
seq2: B6Ng01-190P15.g_68_763

seq1  GAATTCTCCTGATGTGAAAAGATCTACTCATGAATCCCTGTTGTCAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGATGTGAAAAGATCTACTCATGAATCCCTGTTGTCAGGCT  50

seq1  TTTCCTAGCCTGGACTTTATTAGTACACACCAGGACAGGAGACAGAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGCCTGGACTTTATTAGTACACACCAGGACAGGAGACAGAATGA  100

seq1  GCATTTCCTATTTTCTATTCCTCTTTTGTATATATTTGCTGTCCATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCTATTTTCTATTCCTCTTTTGTATATATTTGCTGTCCATATTT  150

seq1  GGACTCAGATATTAGATGAGAAAAGTACTATACTATAAGGATTCAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGATATTAGATGAGAAAAGTACTATACTATAAGGATTCAGAATA  200

seq1  ATAGAAAAAAGAAGAGATTAAACTTATACAAAGATGAGCATATAGGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAAAGAAGAGATTAAACTTATACAAAGATGAGCATATAGGATAA  250

seq1  AATAGTTTTGTTTGTTGATTATTTGATTGGCTTACTGATAACTCATCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTTGTTTGTTGATTATTTGATTGGCTTACTGATAACTCATCTCA  300

seq1  TACTATAACTTGGGATAATCTGAAATGCATAGAAGAGTTGACATGATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAACTTGGGATAATCTGAAATGCATAGAAGAGTTGACATGATATC  350

seq1  CAAAGATTTGTGTACCTCCTGTCTTAGCCTTACTTCTGCTGGATGTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTTGTGTACCTCCTGTCTTAGCCTTACTTCTGCTGGATGTACAA  400

seq1  ACACAAGCCTTCACACCAAGTGATTGAAATTTGAATTATACAACATAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCCTTCACACCAAGTGATTGAAATTTGAATTATACAACATAGTT  450

seq1  ATCCAGATTCAATGAATATCCTTTTGTTTTTTAATCACTAAATATAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATTCAATGAATATCCTTTTGTTTTTTAATCACTAAATATAAATC  500

seq1  CTACTAAGCTAGTTATTATCAAAGTTGAGAATATTTCTTTCTCTGAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAGCTAGTTATTATCAAAGTTGAGAATATTTCTTTCTCTGAAGTA  550

seq1  TGTTATTAGTTCTTTAAGAATTGTATGTATTGTATTTTCACTATATCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTAGTTCTTTAAGAATTGTATGTATTGTATTTTCACTATATCCAC  600

seq1  TGCTCAAAGAACAACCCCTATATTGATTCATGTCCAGTACTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAAGAACAACCCCTATATTGATTCATGTCCAGTACTCTCTCTCTC  650

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  696


| Home | SequenceCutter | Blast | Download |