BAC Information

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BAC

Clone NameB6Ng01-191F23
Chromosome2 (Build37)
Map Location 106,389,997 - 106,579,554
singlet/doubletdoublet
Overlap genenone
Upstream genePax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
Downstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191F23.bB6Ng01-191F23.g
ACCGA014881GA014882
length1,179626
definitionB6Ng01-191F23.b B6Ng01-191F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,389,997 - 106,391,188)(106,578,929 - 106,579,554)
sequence
gaattccattagtgttgcttgcttacaggagtgaaggttgtacattctta
aagctccttccctcatgtaacacacatcactccttatcattccattgggt
aaaacaacttctgcagcttcctacagcgagaacatcagttcatggccaac
gtggaaaatgaaagaaaactctgtggacattcctaaccatcagagtatta
ttcattgatattgatacaatgaagctccatgccttcaataggccttttga
tgtatttaattctgtggcttttccactgtatctactccttatctttattc
aaaattgaactgcattgacttattaagtttgggattatttcggatttgtt
tcttattaaggaaggtgaatgagagcaggaaacaaaaaagattgatgcta
tgaaaaaagacttgttaatagaaagatgtcaattactttatctttcataa
gaataaattataatactcttataaaaggttaaatgagataccatgtccaa
atttttaagttttgtttctagtgcacagttaatgcatgggtggagcccca
tcctcaaggaacacatgtgtagaacaggaagtcctcactgagacaaaggg
taggagctttggattcatcgaaggtgggagggcgtggctgccttcagcca
tagaccataactaacaaagctttcctagttttgaccaccttggaaatgtg
attccatcttggagaaaattgtagcatgactgctgacaggcaagaaggaa
gacagatgtgtatgtgacatagtacaaagtgctaacactcagcgcctgaa
gcagataggtttttgttttgtttgctataagttgttcatctgggaatgta
tctatgagatacatttctgttatggtgaaaatgattacaagggtttttaa
aaacagagtagatcagaagcaacttcaggcttccaattaaaggggcctct
gcaggtgtcagaagggacagaaggcccaaagagcagatgggaagaaccca
ttacacttccagttctgtgtgatatacacagagcttgggaagccactggg
atagtagcattgtaaagccttgacaggaagagactcagcagagcagaaga
catgctgaattcttatctatgaatagggaaaacatttaggacctgtgaat
ggacttcaaagaaataatttctaatcagt
gaattcactgtctaagtgagttgacggaacagcgagtcattcatgaaaga
acagtaagtgatcatcttaaactcatttccaactaattcattttatttcg
tcttgttttatatgacttgtttgtatttgtacatgtttgtatactacatg
tctgtctggtgaccactgaggccggaaaaaggagtcaaatctccaggcac
tagagttacaggtggttgtagaccactatgtgggtgctgggaacagaacc
ttggtcctctgcaagagcagcaaatgctcttaaccacgaagaatctctcc
agtccgaggcccttgggcctgagtgtattcaatgccccaatgtaggggaa
tgccagggtgggaagatgggaggggcaccctcatagaagcagggggcggg
gggatgggataggggctttctaaaggggagacctggagaaaacatttgaa
atgtaaatacagaaaatatccattttttttaaaagaatctctccagtctc
tatacccattttgtgccaatctcaaatattatttctgaagcttaaccaaa
taatgtacatcaaataaatgaagtattctattatttacaactgacacttg
gtgttttggggtttttttgttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_106389997_106391188
seq2: B6Ng01-191F23.b_45_1223

seq1  GAATTCCATTAGTGTTGCTTGCTTACAGGAGTGAAGGTTGTACATTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAGTGTTGCTTGCTTACAGGAGTGAAGGTTGTACATTCTTA  50

seq1  AAGCTCCTTCCCTCATGTAACACACATCACTCCTTATCATTCCATTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTTCCCTCATGTAACACACATCACTCCTTATCATTCCATTGGGT  100

seq1  AAAACAACTTCTGCAGCTTCCTACAGCGAGAACATCAGTTCATGGCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACTTCTGCAGCTTCCTACAGCGAGAACATCAGTTCATGGCCAAC  150

seq1  GTGGAAAATGAAAGAAAACTCTGTGGACATTCCTAACCATCAGAGTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAATGAAAGAAAACTCTGTGGACATTCCTAACCATCAGAGTATTA  200

seq1  TTCATTGATATTGATACAATGAAGCTCCATGCCTTCAATAGGCCTTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGATATTGATACAATGAAGCTCCATGCCTTCAATAGGCCTTTTGA  250

seq1  TGTATTTAATTCTGTGGCTTTTCCACTGTATCTACTCCTTATCTTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTAATTCTGTGGCTTTTCCACTGTATCTACTCCTTATCTTTATTC  300

seq1  AAAATTGAACTGCATTGACTTATTAAGTTTGGGATTATTTCGGATTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAACTGCATTGACTTATTAAGTTTGGGATTATTTCGGATTTGTT  350

seq1  TCTTATTAAGGAAGGTGAATGAGAGCAGGAAACAAAAAAGATTGATGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTAAGGAAGGTGAATGAGAGCAGGAAACAAAAAAGATTGATGCTA  400

seq1  TGAAAAAAGACTTGTTAATAGAAAGATGTCAATTACTTTATCTTTCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAGACTTGTTAATAGAAAGATGTCAATTACTTTATCTTTCATAA  450

seq1  GAATAAATTATAATACTCTTATAAAAGGTTAAATGAGATACCATGTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATTATAATACTCTTATAAAAGGTTAAATGAGATACCATGTCCAA  500

seq1  ATTTTTAAGTTTTGTTTCTAGTGCACAGTTAATGCATGGGTGGAGCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAGTTTTGTTTCTAGTGCACAGTTAATGCATGGGTGGAGCCCCA  550

seq1  TCCTCAAGGAACACATGTGTAGAACAGGAAGTCCTCACTGAGACAAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGGAACACATGTGTAGAACAGGAAGTCCTCACTGAGACAAAGGG  600

seq1  TAGGAGCTTTGGATTCATCGAAGGTGGGAGGGCGTGGCTGCCTTCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTTTGGATTCATCGAAGGTGGGAGGGCGTGGCTGCCTTCAGCCA  650

seq1  TAGACCATAACTAACAAAGCTTTCCTAGTTTTGACCACCTTGGAAATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCATAACTAACAAAGCTTTCCTAGTTTTGACCACCTTGGAAATGTG  700

seq1  ATTCCATCTTGGAGAAAATTGTAGCATGACTGCTGACAGGCAAGAAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCTTGGAGAAAATTGTAGCATGACTGCTGACAGGCAAGAAGGAA  750

seq1  GACAGATGTGTATGTGACATAGTACAAAGTGCTAACACTCAGCGCCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATGTGTATGTGACATAGTACAAAGTGCTAACACTCAGCGCCTGAA  800

seq1  GCAGATAGGTTTTTGTTTTGTTTGCTATAAGTTGTTCATCTGGGAATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAGGTTTTTGTTTTGTTTGCTATAAGTTGTTCATCTGGGAATGTA  850

seq1  TCTATGAGATACATTTCTGTTATGGTGAAAATGATTACAAGGGTTTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAGATACATTTCTGTTATGGTGAAAATGATTACAAGGGTTTTTAA  900

seq1  AAACAGAGTAGATCAGAAGCAACTTCAGGCTTCCAATT-AAGGGGCCTCT  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAACAGAGTAGATCAGAAGCAACTTCAGGCTTCCAATTAAAGGGGCCTCT  950

seq1  GCAAGGTGTCAGAAGGGACAGAAGGGCCAAAGAGCAGAT-GGAAGAACCC  998
      || |||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  GC-AGGTGTCAGAAGGGACAGAAGGCCCAAAGAGCAGATGGGAAGAACCC  999

seq1  ATTTACAACTTCCAGTTCTGTGTGATATACACAGAGCTTTGGGAAAGCCA  1048
      | |||| ||||||||||||||||||||||||||||||||  || ||||||
seq2  A-TTAC-ACTTCCAGTTCTGTGTGATATACACAGAGCTT--GGGAAGCCA  1045

seq1  CT-GGATAGTTAGCATTGTAAAG-CTTGACACAGGAGAGACCTCAGCAAG  1096
      || |||||| ||||||||||||| |||||||  | ||||| |||||| ||
seq2  CTGGGATAG-TAGCATTGTAAAGCCTTGACA-GGAAGAGA-CTCAGC-AG  1091

seq1  AGGCAGAAGACATGCCTGAATTCTTAATCCTTATGAGATAGGAAAAACAT  1146
      | |||||||||||| |||||||||| |||  ||||| ||||| |||||||
seq2  A-GCAGAAGACATG-CTGAATTCTT-ATC--TATGA-ATAGGGAAAACAT  1135

seq1  TTAGAAACATGTAGAATAGACTACAAAGAATATATTTCTAATCAGT  1192
      ||||  || ||| |||| |||| |||||||   |||||||||||||
seq2  TTAG-GACCTGT-GAATGGACTTCAAAGAAATAATTTCTAATCAGT  1179

seq1: chr2_106578929_106579554
seq2: B6Ng01-191F23.g_65_690 (reverse)

seq1  AAAAAAACAAAAAAACCCCAAAACACCAAGTGTCAGTTGTAAATAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAAAAACCCCAAAACACCAAGTGTCAGTTGTAAATAATAGA  50

seq1  ATACTTCATTTATTTGATGTACATTATTTGGTTAAGCTTCAGAAATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCATTTATTTGATGTACATTATTTGGTTAAGCTTCAGAAATAATA  100

seq1  TTTGAGATTGGCACAAAATGGGTATAGAGACTGGAGAGATTCTTTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATTGGCACAAAATGGGTATAGAGACTGGAGAGATTCTTTTAAAA  150

seq1  AAAATGGATATTTTCTGTATTTACATTTCAAATGTTTTCTCCAGGTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGATATTTTCTGTATTTACATTTCAAATGTTTTCTCCAGGTCTCC  200

seq1  CCTTTAGAAAGCCCCTATCCCATCCCCCCGCCCCCTGCTTCTATGAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGAAAGCCCCTATCCCATCCCCCCGCCCCCTGCTTCTATGAGGGT  250

seq1  GCCCCTCCCATCTTCCCACCCTGGCATTCCCCTACATTGGGGCATTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCCATCTTCCCACCCTGGCATTCCCCTACATTGGGGCATTGAAT  300

seq1  ACACTCAGGCCCAAGGGCCTCGGACTGGAGAGATTCTTCGTGGTTAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGGCCCAAGGGCCTCGGACTGGAGAGATTCTTCGTGGTTAAGAG  350

seq1  CATTTGCTGCTCTTGCAGAGGACCAAGGTTCTGTTCCCAGCACCCACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTGCTCTTGCAGAGGACCAAGGTTCTGTTCCCAGCACCCACATA  400

seq1  GTGGTCTACAACCACCTGTAACTCTAGTGCCTGGAGATTTGACTCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTACAACCACCTGTAACTCTAGTGCCTGGAGATTTGACTCCTTTT  450

seq1  TCCGGCCTCAGTGGTCACCAGACAGACATGTAGTATACAAACATGTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCCTCAGTGGTCACCAGACAGACATGTAGTATACAAACATGTACAA  500

seq1  ATACAAACAAGTCATATAAAACAAGACGAAATAAAATGAATTAGTTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACAAGTCATATAAAACAAGACGAAATAAAATGAATTAGTTGGAA  550

seq1  ATGAGTTTAAGATGATCACTTACTGTTCTTTCATGAATGACTCGCTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTAAGATGATCACTTACTGTTCTTTCATGAATGACTCGCTGTTC  600

seq1  CGTCAACTCACTTAGACAGTGAATTC  626
      ||||||||||||||||||||||||||
seq2  CGTCAACTCACTTAGACAGTGAATTC  626