BAC Information

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BAC

Clone NameB6Ng01-192K06
Chromosome2 (Build37)
Map Location 18,528,700 - 18,684,086
singlet/doubletdoublet
Overlap geneLOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493
Upstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325
Downstream geneLOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192K06.bB6Ng01-192K06.g
ACCGA015830GA015831
length7301,150
definitionB6Ng01-192K06.b B6Ng01-192K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,528,700 - 18,529,162)(18,682,908 - 18,684,086)
sequence
gaattccaaaatctatcacacaaaggaggaacaccttcgttttgttctgg
agtgagggggacagaatagaatgttcttgaaaatgtgaatctagaaggtt
aaaacatagttggaaaggtgaattattttattttcagtttctatatatag
accaacttcccccattatgactgaaagaaatgtctcagacagcaaatgat
gtcattgcctccgttgacttgaaatgcttctatcatctgcttgaaaaaaa
acaaagaatccaacccagctacctcacagagaaacgcctcctcaatgaga
cttttcaggaagacacttgtcgctagtcccgcagccaagagacttcaaaa
tcacactgcttctcagagaactccccacggaccaccatttaggaataatt
ttaattcaaaatcagcattcttgagttcagataagtggggggagggagaa
ggagagggagaggtatttaaaagaatgaatttatgaaattcctagccaaa
tggatggacctggagggcatcatcctgagtgaggtaacacattcacaaag
aaactcacacaatatgtactcactgataagtggatattaaccccaaacct
aggataccccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaaagactggaagtgtggacactatgcccctccttagaaattgg
ggaacaaaacaccccatgggaaggagttac
gaattcaatatgccagtaaatgaagcatcactaatggggcgggcatggat
tatcaacaagcagtactaggaatactggccagtcactggagggactctga
atgcatcttcatccatactgaaatccgtctcaggttaaagagggaggtat
aaaacagaagctgtcatggaagagaaatacaccacaaaattatggaagaa
atagatgtatacatagaattgtttagatcagatcagctatgccaaaagtc
ataaataataagttgtaacatgagtatttgtgaggaatatcaagtacgag
aggtagcatttccatcttagagccttctggaaatctttatgaacaataca
tcaatgtatctatatatcagtatatgaaggtcacttagaagagcgtttat
ctggaaggttcgctcatcccattttttttttttttgaatgctcagatttt
tgttgtctgtagattttatttgtatattttgttgtttgtatactttgctt
tttctcaactcattctcttctacagggtagcgtttaggttgtaagtgctt
ctttctccagtttctttttcaaaaatgtccctgggacttcgtgcttccct
tcactctcttccagagaggtaagtttttacagttatcctgagatctataa
aacgacaataatgtaaacgatatggagactattgcatgacagtgaaaaac
atcttatattacgacaatactttgggcctacaaaactttagagacccagt
ttgtctttttgtaatcccatctcccagactagaaaggaaagtttctgtgt
gtccgcatgtgcacacatataccttttaagcacaaatcgataaccgagtg
aaaaaccacataacagccatgaactatgttcagtgatgaagccatggaag
tgaggattattctaaacagcgtgctcacattcttgcagctctggccctta
ctgcacagactgcacgcagggggctagagcttaactgtagcacatcaatt
aaacagtccagaagcttggcaaacagacagacccaacttaaaagaagaac
cctgacttcagggaacctggctgacctgcttggttgggcattgcagactg
aactgttgtaagcatctttctgaccatgtgtccaaggaatgcctgtaacc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_18528700_18529162
seq2: B6Ng01-192K06.b_41_503

seq1  GAATTCCAAAATCTATCACACAAAGGAGGAACACCTTCGTTTTGTTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATCTATCACACAAAGGAGGAACACCTTCGTTTTGTTCTGG  50

seq1  AGTGAGGGGGACAGAATAGAATGTTCTTGAAAATGTGAATCTAGAAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGGGACAGAATAGAATGTTCTTGAAAATGTGAATCTAGAAGGTT  100

seq1  AAAACATAGTTGGAAAGGTGAATTATTTTATTTTCAGTTTCTATATATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAGTTGGAAAGGTGAATTATTTTATTTTCAGTTTCTATATATAG  150

seq1  ACCAACTTCCCCCATTATGACTGAAAGAAATGTCTCAGACAGCAAATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTTCCCCCATTATGACTGAAAGAAATGTCTCAGACAGCAAATGAT  200

seq1  GTCATTGCCTCCGTTGACTTGAAATGCTTCTATCATCTGCTTGAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGCCTCCGTTGACTTGAAATGCTTCTATCATCTGCTTGAAAAAAA  250

seq1  ACAAAGAATCCAACCCAGCTACCTCACAGAGAAACGCCTCCTCAATGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAATCCAACCCAGCTACCTCACAGAGAAACGCCTCCTCAATGAGA  300

seq1  CTTTTCAGGAAGACACTTGTCGCTAGTCCCGCAGCCAAGAGACTTCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGGAAGACACTTGTCGCTAGTCCCGCAGCCAAGAGACTTCAAAA  350

seq1  TCACACTGCTTCTCAGAGAACTCCCCACGGACCACCATTTAGGAATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGCTTCTCAGAGAACTCCCCACGGACCACCATTTAGGAATAATT  400

seq1  TTAATTCAAAATCAGCATTCTTGAGTTCAGATAAGTGGGGGGAGGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCAAAATCAGCATTCTTGAGTTCAGATAAGTGGGGGGAGGGAGAA  450

seq1  GGAGAGGGAGAGG  463
      |||||||||||||
seq2  GGAGAGGGAGAGG  463

seq1: chr2_18682908_18684086
seq2: B6Ng01-192K06.g_61_1210 (reverse)

seq1  GGTTACACGGGGCAATCCTGTGGACCACATGGTCAG-AAGATGCTTACAA  49
      |||||||   |||| |||| |||| ||||||||||| |||||||||||||
seq2  GGTTACA---GGCATTCCT-TGGA-CACATGGTCAGAAAGATGCTTACAA  45

seq1  CAGTCTCAGTTCCCTGCAAGTGCCAACACAAAGGCAGGGCTCAGGCAGGG  99
      |||| |||||   |||||| |||| |  |||  |||||  |||| |||| 
seq2  CAGT-TCAGT---CTGCAA-TGCCCAACCAA--GCAGG--TCAGCCAGG-  85

seq1  TTCCCCTGAAGTCAGGGTTCTTCCTCTTAGGTGTGGGTCTGGTCTGTTTT  149
       | ||||||||||||||||||| || ||| || ||||||| ||||| |||
seq2  -TTCCCTGAAGTCAGGGTTCTT-CTTTTAAGT-TGGGTCT-GTCTG-TTT  130

seq1  GCCCAAGGCTTCTGGGACTGTTTTTATTTGGATGGTGCTACAGTTAAGCT  199
      |||  | |||||| ||||||  |||| || ||| ||||||||||||||||
seq2  GCC--AAGCTTCT-GGACTG--TTTAATT-GAT-GTGCTACAGTTAAGCT  173

seq1  CTAG-CCCCTGCGTGCAGTCTGTGGCAGGTAAGGGCCAGAGCTGCAAG-A  247
      |||| |||||||||||||||||| ||| |||||||||||||||||||| |
seq2  CTAGCCCCCTGCGTGCAGTCTGT-GCA-GTAAGGGCCAGAGCTGCAAGAA  221

seq1  TGTGAGCACGCTGGTTTAGAATAATCCTCACTCCCATGGCTTCATCACTG  297
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TGTGAGCACGCT-GTTTAGAATAATCCTCACTTCCATGGCTTCATCACTG  270

seq1  AACATAGTTCATGGCTTGTTTATGTTGGTTTTTCACTCTGTTATCGATTT  347
      ||||||||||||||||   ||||| ||||||||||||| |||||||||||
seq2  AACATAGTTCATGGCT--GTTATG-TGGTTTTTCACTCGGTTATCGATTT  317

seq1  GTGCTTAAAAGGTATATGTGTGCACATGCGGACACACAGAAACCTTCCTT  397
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGCTTAAAAGGTATATGTGTGCACATGCGGACACACAGAAACTTTCCTT  367

seq1  TCTAGTCTGGGAGATGGGATTACAAAAAGACAAACTGGGTCTCTAAAGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTGGGAGATGGGATTACAAAAAGACAAACTGGGTCTCTAAAGTT  417

seq1  TTGTAGG-CCAAAGTATTGTCGTAATATAAGATGTTTTTCACTGTCATGC  496
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGCCCAAAGTATTGTCGTAATATAAGATGTTTTTCACTGTCATGC  467

seq1  AATAGTCTCCATATCGTTTACATTATTGTCGTTTTATAGATCTCAGGATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCTCCATATCGTTTACATTATTGTCGTTTTATAGATCTCAGGATA  517

seq1  ACTGTAAAAACTTACCTCTCTGGAAGAGAGTGAAGGGAAGCACGAAGTCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAAAACTTACCTCTCTGGAAGAGAGTGAAGGGAAGCACGAAGTCC  567

seq1  CAGGGACATTTTTGAAAAAGAAACTGGAGAAAGAAGCACTTACAACCTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACATTTTTGAAAAAGAAACTGGAGAAAGAAGCACTTACAACCTAA  617

seq1  ACGCTACCCTGTAGAAGAGAATGAGTTGAGAAAAAGCAAAGTATACAAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTACCCTGTAGAAGAGAATGAGTTGAGAAAAAGCAAAGTATACAAAC  667

seq1  AACAAAATATACAAATAAAATCTACAGACAACAAAAATCTGAGCATTCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATATACAAATAAAATCTACAGACAACAAAAATCTGAGCATTCAA  717

seq1  AAAAAAAAAAAATGGGATGAGCGAACCTTCCAGATAAACGCTCTTCTAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAATGGGATGAGCGAACCTTCCAGATAAACGCTCTTCTAAG  767

seq1  TGACCTTCATATACTGATATATAGATACATTGATGTATTGTTCATAAAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCATATACTGATATATAGATACATTGATGTATTGTTCATAAAGA  817

seq1  TTTCCAGAAGGCTCTAAGATGGAAATGCTACCTCTCGTACTTGATATTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAAGGCTCTAAGATGGAAATGCTACCTCTCGTACTTGATATTCC  867

seq1  TCACAAATACTCATGTTACAACTTATTATTTATGACTTTTGGCATAGCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATACTCATGTTACAACTTATTATTTATGACTTTTGGCATAGCTG  917

seq1  ATCTGATCTAAACAATTCTATGTATACATCTATTTCTTCCATAATTTTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATCTAAACAATTCTATGTATACATCTATTTCTTCCATAATTTTGT  967

seq1  GGTGTATTTCTCTTCCATGACAGCTTCTGTTTTATACCTCCCTCTTTAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATTTCTCTTCCATGACAGCTTCTGTTTTATACCTCCCTCTTTAAC  1017

seq1  CTGAGACGGATTTCAGTATGGATGAAGATGCATTCAGAGTCCCTCCAGTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACGGATTTCAGTATGGATGAAGATGCATTCAGAGTCCCTCCAGTG  1067

seq1  ACTGGCCAGTATTCCTAGTACTGCTTGTTGATAATCCATGCCCGCCCCAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCAGTATTCCTAGTACTGCTTGTTGATAATCCATGCCCGCCCCAT  1117

seq1  TAGTGATGCTTCATTTACTGGCATATTGAATTC  1179
      |||||||||||||||||||||||||||||||||
seq2  TAGTGATGCTTCATTTACTGGCATATTGAATTC  1150