BAC Information

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BAC

Clone NameB6Ng01-193N23
Chromosome2 (Build37)
Map Location 115,521,805 - 115,567,751
singlet/doubletdoublet
Overlap geneBC052040
Upstream geneLOC100043219, LOC100043222, LOC100043232, LOC100043236
Downstream geneMrg1, G630016G05Rik, 2810405F15Rik, LOC433464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193N23.bB6Ng01-193N23.g
ACCGA016718GA016719
length1,1381,025
definitionB6Ng01-193N23.b B6Ng01-193N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,566,617 - 115,567,751)(115,521,805 - 115,522,828)
sequence
gaattcctcaagtgcaaatagtttcttttaaaagttattctcatcatatc
tttagtgcgatgcagaaaaggaatcttaaatatttatttcagcattttgt
atttttattggttttgtaaaccactgaaattgtagggtgtacttagagcg
agctgattccatatgcagtaaatcaactggggaagagactagtgagttca
catttacaaagtgaaccacgacagctaaaaatacaacctcttccactccc
accctgaaaaacctgccaacatccaaacaacaatgaaattgcatgctaga
gagatgtatacgatcttccaagataaatacatacaaattaaactggagaa
cctcaaggtgttattgattaattctaagaaacacttcacaatcaactctc
atatctggcttccctggaataactaggagaggaaggaaccaattgcagag
aatatgaatgaagaagggcagtgcattaaaataatttaaaggcaacacag
gaagagaagttgttggcagagcacaatcacaagcaaccatggagaaaagg
aatttcaactctatgcacgaccaggatagccaagccccctagcctgtccc
cactgttttcactggcctcacaggttaggtccttccctttttccctctgg
gacgtcccatctctggagatctatctgttcagagctttctaacagcagtg
aggaacaacagaggaaagccttcctgggataaagccaacaactctagaaa
tttatacagaaggatggtagagggcttacaatccatccaagccaggcttg
gtaacttggtatttggtattcagagtcatattcctgggtgcgcagaacac
tgctttctctccacaaggtatgaacatgttctacaaccaattatgtaaga
atttaaaagattttgttttattcttatgcgtatggggtgttttgcctgca
tgtatgtatggtggaccacatgccataccttggggccttgcagatatcag
aaggaggggagtagaaccaccctggagctgaacacatgactgtgaagcca
caatgtggatgcttgggattgatccaggttcctcagacaccaatggagtg
cttttacactgaccagttctccatggcccgacagcttt

gaattctatacctatgccgttttgttccaccatgaagcttcacagaaggc
ttggggagaagtactggatagatcacttcgttagcttatgagtaaactaa
gctgaagctaaaaatcttgccaacacacaggacatgaggactcatgtctg
tgtggatggacaaaatgagccaggtattcttgtcttgctcaacagccttg
cactatatttaatatgaatctgtagagtcagtgtaaaaaactatcattgt
acccttatatccagaatacagtgaccttattgggagttcaaatcaagtag
ttgatttatatatgatccagatgttaatttaaatgataaatttaaattca
ggagataaattggctaaaggatatttgttagggagtatatatttttaaac
gtttaattagagtttctattttatcctgaattataaattgctccaaataa
aaacctattttaataaataggctttaaagatttaagacagcttttttttt
ctccaggtgtatataattgacataaagcacatgtatttgaagcctataat
tggataagtttaacatatatgtacactcaggaaagtatcacatagtagat
gctgaacatggccagtaccctctggagttcacagtcttgtttccccacta
cctaaccctttcagagacccctggccagcctgccacttcctaatggtctg
ttggcattatgtagcatctttctttttgtttttattatttttccttccct
ttcttcctttttcttttaatttagttagttttggtttccttttactttgt
ttctatttctatggtttttttttaaatatattttaatggagctatcattt
ctttgtctgggtttgtttgtttgtttgtttgttcagactgggtttctctg
tttaatcttggctcttttggaattaattggctttgtagagcaggctggcc
tcaaactcagaaagattcacttgcttctgcttctggagtgctgggaataa
agtgtgtgctgatcgagtggcggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_115566617_115567751
seq2: B6Ng01-193N23.b_43_1180 (reverse)

seq1  AAAGCTTGTCGGGGCATGGAGAAATTGTTCAGTGGTTAAAAGCACT-CAT  49
      ||||| ||||||| ||||||| || || ||||||  |||||||||| |||
seq2  AAAGC-TGTCGGGCCATGGAG-AACTGGTCAGTG--TAAAAGCACTCCAT  46

seq1  TGGTTGTCCTTGAGGACCTGGGTTCAATTCCCAGCATCCACATGGTGGC-  98
      ||| ||||  |||||| |  || ||||| || ||||||||||| ||||| 
seq2  TGG-TGTC--TGAGGAACCTGGATCAATCCCAAGCATCCACATTGTGGCT  93

seq1  TCACAGTCATGTGTTCAGCTCCAGGGT-GTTCTACTCCC--TCTTCTGAT  145
      ||||||||||||||||||||||||||| |||||||||||   ||||||||
seq2  TCACAGTCATGTGTTCAGCTCCAGGGTGGTTCTACTCCCCTCCTTCTGAT  143

seq1  ATCTGC-AGGCCCC-AGGTAT-GCATGTGGTCCA-CATACATACATGCAG  191
      |||||| ||||||| |||||| |||||||||||| |||||||||||||||
seq2  ATCTGCAAGGCCCCAAGGTATGGCATGTGGTCCACCATACATACATGCAG  193

seq1  GCAAAACA-CCCATACGCATAAGAAT-AAACAAAATCTTTTAAATTCTTT  239
      |||||||| ||||||||||||||||| |||||||||||||||||||| ||
seq2  GCAAAACACCCCATACGCATAAGAATAAAACAAAATCTTTTAAATTC-TT  242

seq1  ACATAATTGGTTGTAGAACATGTTCATACCTTGTGGAGAGAAAGCAGTGT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTGGTTGTAGAACATGTTCATACCTTGTGGAGAGAAAGCAGTGT  292

seq1  TCTGCGCACCCAGGAATATGACTCTGAATACCAAATACCAAGTTACCAAG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGCACCCAGGAATATGACTCTGAATACCAAATACCAAGTTACCAAG  342

seq1  CCTGGCTTGGATGGATTGTAAGCCCTCTACCATCCTTCTGTATAAATTTC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTGGATGGATTGTAAGCCCTCTACCATCCTTCTGTATAAATTTC  392

seq1  TAGAGTTGTTGGCTTTATCCCAGGAAGGCTTTCCTCTGTTGTTCCTCACT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTGTTGGCTTTATCCCAGGAAGGCTTTCCTCTGTTGTTCCTCACT  442

seq1  GCTGTTAGAAAGCTCTGAACAGATAGATCTCCAGAGATGGGACGTCCCAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAGAAAGCTCTGAACAGATAGATCTCCAGAGATGGGACGTCCCAG  492

seq1  AGGGAAAAAGGGAAGGACCTAACCTGTGAGGCCAGTGAAAACAGTGGGGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAAGGGAAGGACCTAACCTGTGAGGCCAGTGAAAACAGTGGGGA  542

seq1  CAGGCTAGGGGGCTTGGCTATCCTGGTCGTGCATAGAGTTGAAATTCCTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGGGGGCTTGGCTATCCTGGTCGTGCATAGAGTTGAAATTCCTT  592

seq1  TTCTCCATGGTTGCTTGTGATTGTGCTCTGCCAACAACTTCTCTTCCTGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATGGTTGCTTGTGATTGTGCTCTGCCAACAACTTCTCTTCCTGT  642

seq1  GTTGCCTTTAAATTATTTTAATGCACTGCCCTTCTTCATTCATATTCTCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTTAAATTATTTTAATGCACTGCCCTTCTTCATTCATATTCTCT  692

seq1  GCAATTGGTTCCTTCCTCTCCTAGTTATTCCAGGGAAGCCAGATATGAGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGGTTCCTTCCTCTCCTAGTTATTCCAGGGAAGCCAGATATGAGA  742

seq1  GTTGATTGTGAAGTGTTTCTTAGAATTAATCAATAACACCTTGAGGTTCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTGTGAAGTGTTTCTTAGAATTAATCAATAACACCTTGAGGTTCT  792

seq1  CCAGTTTAATTTGTATGTATTTATCTTGGAAGATCGTATACATCTCTCTA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTAATTTGTATGTATTTATCTTGGAAGATCGTATACATCTCTCTA  842

seq1  GCATGCAATTTCATTGTTGTTTGGATGTTGGCAGGTTTTTCAGGGTGGGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAATTTCATTGTTGTTTGGATGTTGGCAGGTTTTTCAGGGTGGGA  892

seq1  GTGGAAGAGGTTGTATTTTTAGCTGTCGTGGTTCACTTTGTAAATGTGAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGAGGTTGTATTTTTAGCTGTCGTGGTTCACTTTGTAAATGTGAA  942

seq1  CTCACTAGTCTCTTCCCCAGTTGATTTACTGCATATGGAATCAGCTCGCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAGTCTCTTCCCCAGTTGATTTACTGCATATGGAATCAGCTCGCT  992

seq1  CTAAGTACACCCTACAATTTCAGTGGTTTACAAAACCAATAAAAATACAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTACACCCTACAATTTCAGTGGTTTACAAAACCAATAAAAATACAA  1042

seq1  AATGCTGAAATAAATATTTAAGATTCCTTTTCTGCATCGCACTAAAGATA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAAATAAATATTTAAGATTCCTTTTCTGCATCGCACTAAAGATA  1092

seq1  TGATGAGAATAACTTTTAAAAGAAACTATTTGCACTTGAGGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGAATAACTTTTAAAAGAAACTATTTGCACTTGAGGAATTC  1138


seq1: chr2_115521805_115522828
seq2: B6Ng01-193N23.g_65_1089

seq1  GAATTCTATACCTATGCCGTTTTGTTCCACCATGAAGCTTCACAGAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACCTATGCCGTTTTGTTCCACCATGAAGCTTCACAGAAGGC  50

seq1  TTGGGGAGAAGTACTGGATAGATCACTTCGTTAGCTTATGAGTAAACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGAAGTACTGGATAGATCACTTCGTTAGCTTATGAGTAAACTAA  100

seq1  GCTGAAGCTAAAAATCTTGCCAACACACAGGACATGAGGACTCATGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCTAAAAATCTTGCCAACACACAGGACATGAGGACTCATGTCTG  150

seq1  TGTGGATGGACAAAATGAGCCAGGTATTCTTGTCTTGCTCAACAGCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGGACAAAATGAGCCAGGTATTCTTGTCTTGCTCAACAGCCTTG  200

seq1  CACTATATTTAATATGAATCTGTAGAGTCAGTGTAAAAAACTATCATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATTTAATATGAATCTGTAGAGTCAGTGTAAAAAACTATCATTGT  250

seq1  ACCCTTATATCCAGAATACAGTGACCTTATTGGGAGTTCAAATCAAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTATATCCAGAATACAGTGACCTTATTGGGAGTTCAAATCAAGTAG  300

seq1  TTGATTTATATATGATCCAGATGTTAATTTAAATGATAAATTTAAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTATATATGATCCAGATGTTAATTTAAATGATAAATTTAAATTCA  350

seq1  GGAGATAAATTGGCTAAAGGATATTTGTTAGGGAGTATATATTTTTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAATTGGCTAAAGGATATTTGTTAGGGAGTATATATTTTTAAAC  400

seq1  GTTTAATTAGAGTTTCTATTTTATCCTGAATTATAAATTGCTCCAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTAGAGTTTCTATTTTATCCTGAATTATAAATTGCTCCAAATAA  450

seq1  AAACCTATTTTAATAAATAGGCTTTAAAGATTTAAGACAGCTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATTTTAATAAATAGGCTTTAAAGATTTAAGACAGCTTTTTTTTT  500

seq1  CTCCAGGTGTATATAATTGACATAAAGCACATGTATTTGAAGCCTATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTGTATATAATTGACATAAAGCACATGTATTTGAAGCCTATAAT  550

seq1  TGGATAAGTTTAACATATATGTACACTCAGGAAAGTATCACATAGTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGTTTAACATATATGTACACTCAGGAAAGTATCACATAGTAGAT  600

seq1  GCTGAACATGGCCAGTACCCTCTGGAGTTCACAGTCTTGTTTCCCCACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACATGGCCAGTACCCTCTGGAGTTCACAGTCTTGTTTCCCCACTA  650

seq1  CCTAACCCTTTCAGAGACCCCTGGCCAGCCTGCCACTTCCTAATGGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCCTTTCAGAGACCCCTGGCCAGCCTGCCACTTCCTAATGGTCTG  700

seq1  TTGGCATTATGTAGCATCTTTCTTTTTGTTTTTATTATTTTTCCTTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATTATGTAGCATCTTTCTTTTTGTTTTTATTATTTTTCCTTCCCT  750

seq1  TTCTTCCTTTTTCTTTTAATTTAGTTAGTTTTGGTTTCCTTTTACTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTTTTCTTTTAATTTAGTTAGTTTTGGTTTCCTTTTACTTTGT  800

seq1  TTCTATTTCTATGG-TTTTTTTTAAATATATTTTAATGGAGCTATCATTT  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCTATTTCTATGGTTTTTTTTTAAATATATTTTAATGGAGCTATCATTT  850

seq1  CTTTGTCT-GGTTTGTTTGTTTGTTTGTTTGTTCAGACTGGGTTTCTCTG  898
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTGGGTTTGTTTGTTTGTTTGTTTGTTCAGACTGGGTTTCTCTG  900

seq1  TTTAATCTTGGCTCTTTTGGAATTAATTGGCTTTGTAGAGCAGGCTGGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTTGGCTCTTTTGGAATTAATTGGCTTTGTAGAGCAGGCTGGCC  950

seq1  TCAAACTCAGAGAGATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAA  998
      ||||||||||| |||| ||| ||| ||||| ||  ||||||||||| |||
seq2  TCAAACTCAGAAAGATTCACTTGCTTCTGCTTCTGGAGTGCTGGGAATAA  1000

seq1  AGGTGTGTGCTGGTCGAGTGGTGGTA  1024
      | |||||||||| |||||||| ||||
seq2  A-GTGTGTGCTGATCGAGTGGCGGTA  1025


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