BAC Information

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BAC

Clone NameB6Ng01-194C17
Chromosome2 (Build37)
Map Location 121,119,086 - 121,223,171
singlet/doubletdoublet
Overlap geneMtap1a, Hisppd2a, Ckmt1, Strc, Catsper2
Upstream genePla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1
Downstream genePdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194C17.bB6Ng01-194C17.g
ACCGA016938GA016939
length1,1231,020
definitionB6Ng01-194C17.b B6Ng01-194C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,222,029 - 121,223,171)(121,119,086 - 121,120,104)
sequence
gaattcacattcctcttgcttaggagacccacagtcattgttttgtggcc
caggatgattttaaaactcaattctcctgccttatgctgcaaattctggc
agtgtagtgagtgtaagacatccaggttgtcattgtctcctcctcctctt
ttttttccccttcctctctgtagacttacactgtagcccaagctagcttg
taagttattatataatcctagcaagcctagtcactctgcctcccaagctc
tggaactgcaggtgtgccaccacatctggcttagacgtgttttaaagaag
cattcttcctcacagaaaacctggactgggagacccttgtgcatgagaac
ctgcctgggctaatggacatggatcaggatgaccgcattgtctggcccag
agactcactcttccgatatttcgagttactggaaaagcttcagtataacc
tagaagagcgcaagaagttacaagaatttgcaggtgaggatgtaaggcag
tcatgggatccaggagtttttaagtataaggacgtagcatctctgtctca
atcacctcccctcatcaaaaacagtaacttagggacgagctagaaatctg
gtgtcaccagggggcgctcaagtcttacaagctctgaaagcttgattctc
aggataacacggttggtagtattgagaaccagaccaaggtaagttcctgc
tgaaccttgcagtggattcttttctctgaaggccacatttcagctctaag
ctcggggtctcattggagagctagaatttgggaaagtaaacactactgca
tcctgaaaagtaaaccaaccttcaccatcactctccagaaggaagtaggt
gagctagctgcacaggagaattgaacttacgctgaaaacttacctactcc
aaatcattttttcatttggaaaataaatttaccatttgggagattaattt
gaatttataaattcctccaaaaagaagaggagaggagagacaaaaaaatg
aagatcacccccacaccctacccataaactatagttagaacatctgttct
tgttgttgttttgtttttttcgagacgaagtttctcttgtagcattgctt
gtcctgacttcactttgttagac
gaattcctttaagtccttctgactctttgttacattcatgtgctcagagg
atcctgaattagaggtttacattggaaatgtgaaggcagagagagatgaa
cagaagttaagcctcattttgcaagcatccccagtttgggttttgtctga
gaacttaggataccccagtactagtgtagactgggatcctgatttagggt
aattctgaaaccttccacaatgagagaaatatcacgtttatgcattgcaa
ggctaggattgtaggcagaaaggaacgttttcttcagataaggtcagtcg
tcacaggtggcactgatgtacgaactcactagttcagaaagcaagctctg
agattgtttaacttatcatttagtggcatggttcagaaggtggcatcggg
tgtgaattcgggggctgctcagacctccctctcttctttggcatctcacc
atttcactgcatgagagagggattaagggttaaaggctgtcacaaatggt
agcttagagatggggagggaaggaaaaccaactgtgacctggaatcaccg
ggccaaggtgtgctatgggggtgtatggctgagaacaagggtgggctctg
atctcagttggaggatgatattttgttctcaatcccaatgtctactaagg
ttgtgcccccccccccccgccaaacactgagagatccctaaaaagcatag
aggagtcaggaggctggaggcagggtgaaataagagtgatgacattgcag
aaggtagagtattactccatgctgctgagctggtttacatctatgtgtgt
gtctatgccgatgggcgctcctatttcaaatagggatatggcatgttgct
actttgcatcctgtccccctgtcccccagagtactggtgactcagctact
tcttctcctctggctgtagctaagcggggtaggggttgctgagaacaaaa
actatttttggcttctctgaccttcaaaagcagctcttgacagccttgag
cagggtggggcctggggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_121222029_121223171
seq2: B6Ng01-194C17.b_44_1166 (reverse)

seq1  GTCT-ACAAAGTGAGTTCCAGGACAGCCATGGCTACACAGAGAAACTCTG  49
      |||| |||||||||  | |||||||  ||  |||||| |||||||||  |
seq2  GTCTAACAAAGTGAAGT-CAGGACAAGCAATGCTACA-AGAGAAACTTCG  48

seq1  TCTCGAAAAAAAACAAAAAACAAAACAAACAAAAGAACAGATGTTCTAAC  99
      ||||||        ||||||||||||||  | ||||||||||||||||||
seq2  TCTCGA--------AAAAAACAAAACAACAACAAGAACAGATGTTCTAAC  90

seq1  TTATAGTTTATGGGTAGGTGTGTGTGTGTGTGTATCTTCCTTTTTTTTTG  149
       |||||||||||||||||   ||||| | ||| ||||||   ||||||||
seq2  -TATAGTTTATGGGTAGG---GTGTGGGGGTG-ATCTTC--ATTTTTTTG  133

seq1  TCTCTTCTTCCTCCTCTTTCTTTTTTGGAGGAATTTTATAAATTCAAATT  199
      ||||| ||  ||||||||   |||||||||||| ||||||||||||||||
seq2  TCTCTCCT--CTCCTCTT--CTTTTTGGAGGAA-TTTATAAATTCAAATT  178

seq1  AATCT-CCAAATGGTAAATTTATTTTCCAAATGGAAAAATGATTTGGAGT  248
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATCTCCCAAATGGTAAATTTATTTTCCAAATGAAAAAATGATTTGGAGT  228

seq1  AGGTAAGTTTTCAGCGTAAGTTCAATTCTCCTGTGCAGCTAGCTCACCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGTTTTCAGCGTAAGTTCAATTCTCCTGTGCAGCTAGCTCACCTA  278

seq1  CTTCCTTCTGGAGAGTGATGGTGAAGGTTGGTTTACTTTTCAGGATGCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTGGAGAGTGATGGTGAAGGTTGGTTTACTTTTCAGGATGCAG  328

seq1  TAGTGTTTACTTTCCCAAATTCTAGCTCTCCAATGAGACCCCGAGCTTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTACTTTCCCAAATTCTAGCTCTCCAATGAGACCCCGAGCTTAG  378

seq1  AGCTGAAATGTGGCCTTCAGAGAAAAGAATCCACTGCAAGGTTCAGCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAATGTGGCCTTCAGAGAAAAGAATCCACTGCAAGGTTCAGCAGG  428

seq1  AACTTACCTTGGTCTGGTTCTCAATACTACCAACCGTGTTATCCTGAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACCTTGGTCTGGTTCTCAATACTACCAACCGTGTTATCCTGAGAA  478

seq1  TCAAGCTTTCAGAGCTTGTAAGACTTGAGCGCCCCCTGGTGACACCAGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTTTCAGAGCTTGTAAGACTTGAGCGCCCCCTGGTGACACCAGAT  528

seq1  TTCTAGCTCGTCCCTAAGTTACTGTTTTTGATGAGGGGAGGTGATTGAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTCGTCCCTAAGTTACTGTTTTTGATGAGGGGAGGTGATTGAGA  578

seq1  CAGAGATGCTACGTCCTTATACTTAAAAACTCCTGGATCCCATGACTGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGCTACGTCCTTATACTTAAAAACTCCTGGATCCCATGACTGCC  628

seq1  TTACATCCTCACCTGCAAATTCTTGTAACTTCTTGCGCTCTTCTAGGTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCCTCACCTGCAAATTCTTGTAACTTCTTGCGCTCTTCTAGGTTA  678

seq1  TACTGAAGCTTTTCCAGTAACTCGAAATATCGGAAGAGTGAGTCTCTGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGCTTTTCCAGTAACTCGAAATATCGGAAGAGTGAGTCTCTGGG  728

seq1  CCAGACAATGCGGTCATCCTGATCCATGTCCATTAGCCCAGGCAGGTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAATGCGGTCATCCTGATCCATGTCCATTAGCCCAGGCAGGTTCT  778

seq1  CATGCACAAGGGTCTCCCAGTCCAGGTTTTCTGTGAGGAAGAATGCTTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAAGGGTCTCCCAGTCCAGGTTTTCTGTGAGGAAGAATGCTTCT  828

seq1  TTAAAACACGTCTAAGCCAGATGTGGTGGCACACCTGCAGTTCCAGAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACACGTCTAAGCCAGATGTGGTGGCACACCTGCAGTTCCAGAGCT  878

seq1  TGGGAGGCAGAGTGACTAGGCTTGCTAGGATTATATAATAACTTACAAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGTGACTAGGCTTGCTAGGATTATATAATAACTTACAAGC  928

seq1  TAGCTTGGGCTACAGTGTAAGTCTACAGAGAGGAAGGGGAAAAAAAAGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGGGCTACAGTGTAAGTCTACAGAGAGGAAGGGGAAAAAAAAGAG  978

seq1  GAGGAGGAGACAATGACAACCTGGATGTCTTACACTCACTACACTGCCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGACAATGACAACCTGGATGTCTTACACTCACTACACTGCCAG  1028

seq1  AATTTGCAGCATAAGGCAGGAGAATTGAGTTTTAAAATCATCCTGGGCCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCAGCATAAGGCAGGAGAATTGAGTTTTAAAATCATCCTGGGCCA  1078

seq1  CAAAACAATGACTGTGGGTCTCCTAAGCAAGAGGAATGTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAATGACTGTGGGTCTCCTAAGCAAGAGGAATGTGAATTC  1123

seq1: chr2_121119086_121120104
seq2: B6Ng01-194C17.g_65_1084

seq1  GAATTCCTTTAAGTCCTTCTGACTCTTTGTTACATTCATGTGCTCAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAAGTCCTTCTGACTCTTTGTTACATTCATGTGCTCAGAGG  50

seq1  ATCCTGAATTAGAGGTTTACATTGGAAATGTGAAGGCAGAGAGAGATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAATTAGAGGTTTACATTGGAAATGTGAAGGCAGAGAGAGATGAA  100

seq1  CAGAAGTTAAGCCTCATTTTGCAAGCATCCCCAGTTTGGGTTTTGTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTAAGCCTCATTTTGCAAGCATCCCCAGTTTGGGTTTTGTCTGA  150

seq1  GAACTTAGGATACCCCAGTACTAGTGTAGACTGGGATCCTGATTTAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAGGATACCCCAGTACTAGTGTAGACTGGGATCCTGATTTAGGGT  200

seq1  AATTCTGAAACCTTCCACAATGAGAGAAATATCACGTTTATGCATTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAAACCTTCCACAATGAGAGAAATATCACGTTTATGCATTGCAA  250

seq1  GGCTAGGATTGTAGGCAGAAAGGAACGTTTTCTTCAGATAAGGTCAGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGATTGTAGGCAGAAAGGAACGTTTTCTTCAGATAAGGTCAGTCG  300

seq1  TCACAGGTGGCACTGATGTACGAACTCACTAGTTCAGAAAGCAAGCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGTGGCACTGATGTACGAACTCACTAGTTCAGAAAGCAAGCTCTG  350

seq1  AGATTGTTTAACTTATCATTTAGTGGCATGGTTCAGAAGGTGGCATCGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTTAACTTATCATTTAGTGGCATGGTTCAGAAGGTGGCATCGGG  400

seq1  TGTGAATTCGGGGGCTGCTCAGACCTCCCTCTCTTCTTTGGCATCTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTCGGGGGCTGCTCAGACCTCCCTCTCTTCTTTGGCATCTCACC  450

seq1  ATTTCACTGCATGAGAGAGGGATTAAGGGTTAAAGGCTGTCACAAATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACTGCATGAGAGAGGGATTAAGGGTTAAAGGCTGTCACAAATGGT  500

seq1  AGCTTAGAGATGGGGAGGGAAGGAAAACCAACTGTGACCTGGAATCACCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGAGATGGGGAGGGAAGGAAAACCAACTGTGACCTGGAATCACCG  550

seq1  GGCCAAGGTGTGCTATGGGGGTGTATGGCTGAGAACAAGGGTGGGCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGGTGTGCTATGGGGGTGTATGGCTGAGAACAAGGGTGGGCTCTG  600

seq1  ATCTCAGTTGGAGGATGATATTTTGTTCTCAATCCCAATGTCTACTAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTTGGAGGATGATATTTTGTTCTCAATCCCAATGTCTACTAAGG  650

seq1  TTGTGCCCCCCCCCCCCCGCCAAACACTGAGAGATCCCTAAAAAGCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCCCCCCCCCCCCGCCAAACACTGAGAGATCCCTAAAAAGCATAG  700

seq1  AGGAGTCAGGAGGCTGGAGGCAGGGTGAAATAAGAGTGATGACATTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCAGGAGGCTGGAGGCAGGGTGAAATAAGAGTGATGACATTGCAG  750

seq1  AAGGTAGAGTATTACTCCATGCTGCTGAGCTGGTTTACATCTATGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGAGTATTACTCCATGCTGCTGAGCTGGTTTACATCTATGTGTGT  800

seq1  GTCTATGCCGATGGCCGCTCCTA-TTCAAATAGGGATATGGCATGTTGCT  849
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  GTCTATGCCGATGGGCGCTCCTATTTCAAATAGGGATATGGCATGTTGCT  850

seq1  ACTTTGCATCCTGTTCCCCCTGTCCCCCAGAGTACTGGTGACTCAGCTAC  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCATCCTG-TCCCCCTGTCCCCCAGAGTACTGGTGACTCAGCTAC  899

seq1  TTC-TCTCCTCTGGCTGTAGCTAAAGCGGGGTAGGGGTTGCTGAGAGCAG  948
      ||| |||||||||||||||||| ||||||||||||||||||||||| || 
seq2  TTCTTCTCCTCTGGCTGTAGCT-AAGCGGGGTAGGGGTTGCTGAGAACAA  948

seq1  AGACTA-TTTTGGCTTCTCTGACCTTCAAAAGCAGCCCTTGGCAGCCTGG  997
      | |||| ||||||||||||||||||||||||||||| |||| |||||| |
seq2  AAACTATTTTTGGCTTCTCTGACCTTCAAAAGCAGCTCTTGACAGCCTTG  998

seq1  AGCAGGGGTGGGGCTGGGGCTG  1019
      |||||||  ||| |||||||||
seq2  AGCAGGGTGGGGCCTGGGGCTG  1020